Wall clock time and date at job start Tue Mar 31 2020 16:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47085 * 2 1 4 4 N 1.46898 * 109.47172 * 119.99892 * 2 1 3 5 5 C 1.46845 * 111.00154 * 298.95318 * 4 2 1 6 6 C 1.53038 * 109.52510 * 174.16098 * 5 4 2 7 7 C 1.53119 * 109.27748 * 59.17953 * 6 5 4 8 8 C 1.53114 * 109.16346 * 302.34730 * 7 6 5 9 9 H 1.08998 * 109.50324 * 297.67574 * 8 7 6 10 10 N 1.46498 * 109.50427 * 177.59307 * 8 7 6 11 11 S 1.65604 * 119.99524 * 94.99970 * 10 8 7 12 12 O 1.42096 * 104.28142 * 308.92954 * 11 10 8 13 13 O 1.42104 * 104.27550 * 181.06858 * 11 10 8 14 14 C 1.81405 * 104.45102 * 65.00399 * 11 10 8 15 15 C 1.52997 * 109.47297 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.46976 * 299.99663 * 15 14 11 17 17 C 1.53002 * 109.47156 * 59.99355 * 15 14 11 18 18 C 1.50698 * 109.47353 * 179.97438 * 15 14 11 19 19 H 1.08008 * 119.99422 * 0.82809 * 18 15 14 20 20 C 1.37874 * 120.00212 * 180.83434 * 18 15 14 21 21 N 1.31519 * 120.00000 * 194.57306 * 20 18 15 22 22 Si 1.86795 * 119.99820 * 14.57806 * 20 18 15 23 23 H 1.48501 * 109.47606 * 84.45444 * 22 20 18 24 24 H 1.48507 * 109.46723 * 204.45439 * 22 20 18 25 25 H 1.48503 * 109.47162 * 324.45122 * 22 20 18 26 26 C 1.46848 * 110.99961 * 174.74681 * 4 2 1 27 27 H 1.09004 * 109.47372 * 300.00295 * 1 2 3 28 28 H 1.09001 * 109.47189 * 60.00132 * 1 2 3 29 29 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47409 * 240.00457 * 2 1 3 31 31 H 1.08998 * 109.46803 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46999 * 299.99984 * 3 2 1 33 33 H 1.09000 * 109.46624 * 59.99976 * 3 2 1 34 34 H 1.09005 * 109.46161 * 54.14184 * 5 4 2 35 35 H 1.08999 * 109.46753 * 294.17978 * 5 4 2 36 36 H 1.09003 * 109.50105 * 299.24112 * 6 5 4 37 37 H 1.09001 * 109.50218 * 179.12178 * 6 5 4 38 38 H 1.09005 * 109.51963 * 182.43912 * 7 6 5 39 39 H 1.09001 * 109.57004 * 62.28855 * 7 6 5 40 40 H 0.96998 * 120.00143 * 275.00123 * 10 8 7 41 41 H 1.09002 * 109.46536 * 299.99724 * 14 11 10 42 42 H 1.09002 * 109.47079 * 59.99412 * 14 11 10 43 43 H 1.09009 * 109.47278 * 70.23184 * 16 15 14 44 44 H 1.08998 * 109.47453 * 190.23604 * 16 15 14 45 45 H 1.09003 * 109.47063 * 310.23752 * 16 15 14 46 46 H 1.09001 * 109.46930 * 60.00536 * 17 15 14 47 47 H 1.09002 * 109.46830 * 179.97438 * 17 15 14 48 48 H 1.08994 * 109.47175 * 300.00420 * 17 15 14 49 49 H 0.96998 * 119.99946 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.46863 * 65.82458 * 26 4 2 51 51 H 1.09000 * 109.46314 * 305.85352 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5694 -0.0123 2.4205 6 6 1.9727 -0.8380 3.6443 7 6 3.4947 -1.0048 3.6622 8 6 3.9427 -1.6716 2.3588 9 1 3.5012 -2.6656 2.2881 10 7 5.4033 -1.7827 2.3431 11 16 6.1326 -3.1818 2.8463 12 8 5.5505 -3.4435 4.1159 13 8 7.5231 -2.9178 2.7182 14 6 5.6071 -4.4268 1.6362 15 6 6.2235 -5.7801 1.9962 16 6 7.7492 -5.6658 1.9805 17 6 5.7577 -6.1974 3.3926 18 6 5.7865 -6.8145 0.9913 19 1 5.1450 -6.5318 0.1696 20 6 6.2053 -8.1217 1.1209 21 7 6.0731 -8.9575 0.1140 22 14 6.9603 -8.7057 2.7265 23 1 5.8806 -9.0958 3.6684 24 1 7.8358 -9.8763 2.4649 25 1 7.7651 -7.6092 3.3228 26 6 3.4822 -0.8217 1.1722 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.4850 0.0963 2.3969 35 1 2.0316 0.9731 2.4789 36 1 1.4997 -1.8187 3.5935 37 1 1.6521 -0.3251 4.5511 38 1 3.7827 -1.6287 4.5084 39 1 3.9681 -0.0271 3.7528 40 1 5.9433 -1.0369 2.0380 41 1 4.5202 -4.5079 1.6471 42 1 5.9394 -4.1297 0.6415 43 1 8.0768 -5.0585 2.8244 44 1 8.1888 -6.6603 2.0562 45 1 8.0689 -5.1971 1.0498 46 1 4.6708 -6.2788 3.4037 47 1 6.1965 -7.1617 3.6488 48 1 6.0735 -5.4493 4.1196 49 1 6.3681 -9.8770 0.2051 50 1 3.9355 0.1674 1.2364 51 1 3.7872 -1.3011 0.2421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331347370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:35 Heat of formation + Delta-G solvation = -85.565399 kcal Electronic energy + Delta-G solvation = -28934.894379 eV Core-core repulsion = 25188.744686 eV Total energy + Delta-G solvation = -3746.149693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60632 -38.50098 -38.15643 -37.14167 -36.87912 -34.26239 -34.03525 -31.58884 -29.76743 -28.98370 -28.15041 -28.01998 -27.08484 -25.26147 -23.85827 -21.82080 -21.58820 -20.50102 -19.89644 -18.84073 -18.12506 -17.77186 -17.21699 -16.90669 -16.72603 -16.05900 -15.82461 -15.45048 -15.17270 -15.11059 -15.03555 -14.90085 -14.76158 -14.38059 -14.18037 -14.13370 -13.72781 -13.59063 -13.23543 -13.08396 -13.03192 -12.82262 -12.76476 -12.71793 -12.62516 -12.58025 -12.44162 -12.11644 -12.01302 -11.99949 -11.85693 -11.73711 -11.62009 -11.50867 -11.28363 -10.94176 -10.68184 -10.52975 -10.29192 -9.17248 -8.34405 -6.33704 -0.66523 1.30460 1.35294 1.43175 1.78375 2.29877 2.75817 2.99454 3.00132 3.29156 3.67935 3.77936 3.82544 3.95297 4.04159 4.08373 4.18496 4.24334 4.30137 4.34735 4.42080 4.44662 4.52688 4.60009 4.62469 4.69075 4.71714 4.76035 4.78066 4.79263 4.86629 4.94357 4.94871 5.02759 5.08130 5.11663 5.14641 5.19497 5.33387 5.36286 5.38321 5.43652 5.49309 5.53146 5.63285 6.06968 6.21677 6.24327 6.27098 6.69120 7.30519 8.81503 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.003499 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.014243 B = 7999.372869 C = 8663.864751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 C -0.183 4.183 4 N -0.542 5.542 5 C 0.049 3.951 6 C -0.115 4.115 7 C -0.139 4.139 8 C 0.150 3.850 9 H 0.085 0.915 10 N -1.106 6.106 11 S 2.617 3.383 12 O -0.979 6.979 13 O -0.987 6.987 14 C -0.584 4.584 15 C 0.045 3.955 16 C -0.175 4.175 17 C -0.186 4.186 18 C -0.503 4.503 19 H 0.049 0.951 20 C 0.026 3.974 21 N -0.936 5.936 22 Si 0.916 3.084 23 H -0.275 1.275 24 H -0.306 1.306 25 H -0.221 1.221 26 C 0.052 3.948 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.424 0.576 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.043 0.957 48 H 0.065 0.935 49 H 0.266 0.734 50 H 0.055 0.945 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 23.248 3.077 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.241 4.241 4 N -0.267 5.267 5 C -0.078 4.078 6 C -0.153 4.153 7 C -0.179 4.179 8 C 0.043 3.957 9 H 0.103 0.897 10 N -0.866 5.866 11 S 2.713 3.287 12 O -0.969 6.969 13 O -0.977 6.977 14 C -0.716 4.716 15 C 0.043 3.957 16 C -0.233 4.233 17 C -0.243 4.243 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.172 4.172 21 N -0.575 5.575 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.234 1.234 25 H -0.146 1.146 26 C -0.077 4.077 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.260 0.740 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.319 22.401 3.840 24.564 hybrid contribution 0.594 -0.144 -0.380 0.720 sum -8.725 22.257 3.460 24.155 Atomic orbital electron populations 1.21852 0.93485 1.02224 1.02402 1.21759 0.96424 0.92771 0.92500 1.22440 1.01289 0.97489 1.02923 1.62066 1.09768 1.51994 1.02853 1.22249 1.01307 0.95445 0.88828 1.21584 0.94284 1.01270 0.98188 1.22129 0.97086 1.01485 0.97189 1.20872 0.77805 1.01009 0.96052 0.89712 1.55415 1.14966 1.31611 1.84580 1.04660 0.73317 0.74687 0.76032 1.93522 1.79005 1.85112 1.39282 1.93533 1.32408 1.84095 1.87696 1.30399 1.12126 1.11638 1.17422 1.18204 0.92412 0.91449 0.93669 1.22695 0.97008 1.01970 1.01592 1.22838 1.02902 1.01157 0.97373 1.20923 1.30688 0.92545 1.09986 0.93277 1.25666 0.95675 0.97188 0.98718 1.70056 1.49322 1.06181 1.31896 0.86719 0.79558 0.77629 0.81493 1.20229 1.23435 1.14583 1.22297 0.88371 0.99117 0.97934 0.91977 0.91203 0.92685 0.90270 0.92811 0.91229 0.92051 0.89253 0.93804 0.91642 0.89623 0.91808 0.90827 0.74008 0.84491 0.84305 0.93101 0.92471 0.91708 0.91164 0.93838 0.91658 0.92497 0.92729 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.00 71.98 0.65 -1.07 16 2 C 0.07 1.02 2.96 44.92 0.13 1.15 16 3 C -0.18 -2.08 8.50 71.99 0.61 -1.47 16 4 N -0.54 -9.03 4.64 -871.10 -4.04 -13.07 16 5 C 0.05 0.70 4.63 86.33 0.40 1.10 16 6 C -0.11 -1.88 6.09 30.65 0.19 -1.70 16 7 C -0.14 -2.80 5.61 30.67 0.17 -2.62 16 8 C 0.15 3.18 2.72 45.04 0.12 3.30 16 9 H 0.08 1.97 7.15 -2.39 -0.02 1.96 16 10 N -1.11 -25.19 5.37 -169.18 -0.91 -26.10 16 11 S 2.62 84.10 4.42 -56.49 -0.25 83.85 16 12 O -0.98 -35.56 14.78 -127.65 -1.89 -37.45 16 13 O -0.99 -36.32 15.92 -127.65 -2.03 -38.36 16 14 C -0.58 -20.63 4.88 71.98 0.35 -20.28 16 15 C 0.05 2.02 0.52 -52.93 -0.03 1.99 16 16 C -0.18 -7.69 6.95 71.98 0.50 -7.19 16 17 C -0.19 -8.06 7.22 71.98 0.52 -7.54 16 18 C -0.50 -27.28 8.62 25.60 0.22 -27.06 16 19 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 20 C 0.03 1.49 5.31 84.65 0.45 1.94 16 21 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 22 Si 0.92 44.21 22.79 68.60 1.56 45.78 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.31 -14.84 7.11 99.48 0.71 -14.13 16 25 H -0.22 -9.74 4.67 99.48 0.46 -9.28 16 26 C 0.05 0.91 4.56 86.33 0.39 1.30 16 27 H 0.06 0.67 6.30 -2.39 -0.02 0.66 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 31 H 0.05 0.65 6.66 -2.39 -0.02 0.64 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.67 6.52 -2.39 -0.02 0.65 16 34 H 0.09 1.12 6.04 -2.38 -0.01 1.10 16 35 H 0.04 0.57 6.62 -2.39 -0.02 0.56 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.55 7.48 -2.38 -0.02 1.54 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 40 H 0.42 7.66 8.80 -96.74 -0.85 6.81 16 41 H 0.14 4.42 7.44 -2.39 -0.02 4.40 16 42 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 43 H 0.05 2.07 6.21 -2.38 -0.01 2.05 16 44 H 0.06 2.58 4.32 -2.39 -0.01 2.57 16 45 H 0.06 2.69 8.11 -2.39 -0.02 2.67 16 46 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 47 H 0.04 1.94 2.28 -2.39 -0.01 1.93 16 48 H 0.06 2.62 5.46 -2.39 -0.01 2.60 16 49 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 50 H 0.05 0.81 6.74 -2.39 -0.02 0.80 16 51 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 Total: -1.00 -69.20 372.03 -2.75 -71.95 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.17 Total: 28.39 kcal Atomic # 6 Polarization: -62.83 SS G_CDS: 4.68 Total: -58.15 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -4.65 Total: -96.01 kcal Atomic # 8 Polarization: -71.89 SS G_CDS: -3.92 Total: -75.81 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.56 Total: 45.78 kcal Atomic # 16 Polarization: 84.10 SS G_CDS: -0.25 Total: 83.85 kcal Total: -69.20 -2.75 -71.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331347370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.618 kcal (2) G-P(sol) polarization free energy of solvation -69.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds