Wall clock time and date at job start Tue Mar 31 2020 16:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46878 * 2 1 4 4 N 1.46505 * 109.46815 * 179.97438 * 3 2 1 5 5 C 1.37098 * 120.00051 * 262.67767 * 4 3 2 6 6 H 1.08007 * 120.00270 * 200.99760 * 5 4 3 7 7 C 1.38948 * 120.00058 * 20.99369 * 5 4 3 8 8 N 1.31419 * 119.99884 * 3.63225 * 7 5 4 9 9 Si 1.86799 * 120.00296 * 183.62899 * 7 5 4 10 10 H 1.48505 * 109.46889 * 90.00133 * 9 7 5 11 11 H 1.48500 * 109.47218 * 210.00027 * 9 7 5 12 12 H 1.48501 * 109.47264 * 330.00667 * 9 7 5 13 13 C 1.34779 * 120.00206 * 82.68336 * 4 3 2 14 14 O 1.21299 * 119.99778 * 5.77397 * 13 4 3 15 15 C 1.50698 * 120.00219 * 185.77410 * 13 4 3 16 16 H 1.09004 * 109.46849 * 45.47723 * 15 13 4 17 17 C 1.52995 * 109.46994 * 285.47745 * 15 13 4 18 18 N 1.46500 * 109.47128 * 165.47679 * 15 13 4 19 19 C 1.34776 * 119.99942 * 205.00156 * 18 15 13 20 20 O 1.21275 * 119.99909 * 359.97438 * 19 18 15 21 21 C 1.50695 * 119.99977 * 180.02562 * 19 18 15 22 22 C 1.52998 * 109.47182 * 179.97438 * 21 19 18 23 23 C 1.50705 * 109.47371 * 179.97438 * 22 21 19 24 24 C 1.38234 * 119.99853 * 269.72747 * 23 22 21 25 25 C 1.38235 * 119.99931 * 179.76292 * 24 23 22 26 26 C 1.38244 * 119.99803 * 0.50811 * 25 24 23 27 27 C 1.38231 * 119.99701 * 359.74528 * 26 25 24 28 28 C 1.38232 * 120.00385 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47352 * 300.00155 * 1 2 3 31 31 H 1.09005 * 109.47046 * 60.00329 * 1 2 3 32 32 H 1.08998 * 109.47352 * 239.99845 * 2 1 3 33 33 H 1.09005 * 109.47046 * 119.99671 * 2 1 3 34 34 H 1.09006 * 109.47460 * 60.00069 * 3 2 1 35 35 H 1.09000 * 109.47451 * 299.99837 * 3 2 1 36 36 H 0.96997 * 120.00058 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47629 * 52.36054 * 17 15 13 38 38 H 1.09004 * 109.47013 * 172.35453 * 17 15 13 39 39 H 1.09000 * 109.47169 * 292.35646 * 17 15 13 40 40 H 0.97001 * 119.99802 * 24.99959 * 18 15 13 41 41 H 1.09005 * 109.46729 * 299.99455 * 21 19 18 42 42 H 1.08996 * 109.47596 * 59.99404 * 21 19 18 43 43 H 1.09001 * 109.47413 * 300.00041 * 22 21 19 44 44 H 1.09004 * 109.46843 * 59.99845 * 22 21 19 45 45 H 1.08000 * 120.00146 * 359.97438 * 24 23 22 46 46 H 1.07995 * 120.00621 * 180.23594 * 25 24 23 47 47 H 1.07995 * 120.00028 * 179.72393 * 26 25 24 48 48 H 1.08004 * 119.99714 * 179.97438 * 27 26 25 49 49 H 1.07999 * 120.00440 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1899 1.5940 1.1785 6 1 5.2162 1.9304 1.1670 7 6 3.5639 1.3148 2.3871 8 7 2.3394 0.8378 2.3981 9 14 4.4627 1.6176 3.9965 10 1 4.1930 3.0021 4.4611 11 1 3.9870 0.6510 5.0185 12 1 5.9224 1.4406 3.7891 13 6 4.1794 1.2937 -1.1568 14 8 3.5779 1.2649 -2.2098 15 6 5.6806 1.1630 -1.1427 16 1 5.9768 0.4595 -0.3645 17 6 6.3088 2.5293 -0.8611 18 7 6.1404 0.6731 -2.4445 19 6 7.3103 0.0108 -2.5405 20 8 7.9825 -0.1792 -1.5491 21 6 7.7835 -0.4926 -3.8797 22 6 9.1282 -1.2027 -3.7114 23 6 9.6012 -1.7068 -5.0506 24 6 9.2524 -2.9756 -5.4740 25 6 9.6822 -3.4361 -6.7045 26 6 10.4695 -2.6317 -7.5071 27 6 10.8226 -1.3649 -7.0813 28 6 10.3889 -0.9026 -5.8529 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6765 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.9025 0.6426 3.2418 37 1 5.8650 2.9548 0.0390 38 1 7.3828 2.4125 -0.7162 39 1 6.1262 3.1941 -1.7053 40 1 5.6028 0.8254 -3.2375 41 1 7.0513 -1.1914 -4.2845 42 1 7.9000 0.3481 -4.5635 43 1 9.8602 -0.5037 -3.3068 44 1 9.0120 -2.0435 -3.0275 45 1 8.6413 -3.6059 -4.8450 46 1 9.4066 -4.4260 -7.0371 47 1 10.8090 -2.9931 -8.4665 48 1 11.4381 -0.7365 -7.7081 49 1 10.6651 0.0870 -5.5201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337770836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:15 Heat of formation + Delta-G solvation = -53.078800 kcal Electronic energy + Delta-G solvation = -28281.262113 eV Core-core repulsion = 24401.077193 eV Total energy + Delta-G solvation = -3880.184920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.88728 -39.31443 -38.43560 -35.50580 -34.36983 -33.93521 -32.36553 -31.62148 -31.06026 -30.50308 -29.15480 -25.83905 -25.15745 -24.67723 -22.75375 -22.73969 -21.13848 -20.45521 -19.80354 -19.17164 -17.76459 -17.10280 -16.61689 -15.78307 -15.67054 -15.31578 -15.12458 -14.83508 -14.30167 -14.29103 -14.00003 -13.63188 -13.57623 -13.51668 -13.20562 -13.01784 -12.79819 -12.73208 -12.33207 -11.99995 -11.94697 -11.88245 -11.42393 -11.36713 -11.32096 -11.13417 -11.01197 -10.90943 -10.87567 -10.70770 -10.40688 -10.35436 -10.15134 -9.64804 -9.56031 -9.09943 -8.91134 -8.84021 -8.73313 -8.36353 -7.73516 -6.35620 -4.04953 1.17235 1.22327 2.96138 3.07277 3.18221 3.20653 3.43755 3.65670 3.80667 4.03337 4.62852 4.68363 4.76632 4.82569 4.93887 5.00296 5.02398 5.08888 5.25543 5.37967 5.38309 5.58679 5.74509 5.78340 5.83090 5.86942 5.91687 5.94283 6.11225 6.12938 6.15841 6.29256 6.33030 6.33110 6.43980 6.45594 6.50990 6.65268 6.68623 6.83311 6.84960 6.92838 7.01263 7.07000 7.30520 7.47973 7.71414 7.81819 7.95933 8.38105 8.60149 8.98207 9.41554 9.80341 10.56553 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002426 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.242417 B =11540.190742 C =12343.992021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C 0.142 3.858 4 N -0.431 5.431 5 C -0.339 4.339 6 H 0.105 0.895 7 C 0.037 3.963 8 N -0.861 5.861 9 Si 0.923 3.077 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.450 3.550 14 O -0.611 6.611 15 C 0.139 3.861 16 H 0.107 0.893 17 C -0.158 4.158 18 N -0.707 5.707 19 C 0.510 3.490 20 O -0.548 6.548 21 C -0.133 4.133 22 C -0.066 4.066 23 C -0.078 4.078 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.117 4.117 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.032 0.968 36 H 0.268 0.732 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.406 0.594 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.338 -3.537 -12.328 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.019 3.981 4 N -0.148 5.148 5 C -0.466 4.466 6 H 0.122 0.878 7 C -0.168 4.168 8 N -0.500 5.500 9 Si 0.750 3.250 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.237 3.763 14 O -0.499 6.499 15 C 0.032 3.968 16 H 0.124 0.876 17 C -0.217 4.217 18 N -0.360 5.360 19 C 0.296 3.704 20 O -0.426 6.426 21 C -0.173 4.173 22 C -0.103 4.103 23 C -0.078 4.078 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.135 4.135 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.242 0.758 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.327 -3.726 -11.921 16.206 hybrid contribution 0.033 0.147 0.479 0.502 sum 10.359 -3.579 -11.442 15.845 Atomic orbital electron populations 1.21569 0.97588 0.99688 1.00395 1.21807 0.93772 0.98468 1.01587 1.21296 0.79619 0.96883 1.00278 1.43701 1.05782 1.59873 1.05412 1.19942 0.98733 1.44900 0.83060 0.87760 1.25366 0.96186 0.95436 0.99777 1.70072 1.12032 1.41036 1.26828 0.85970 0.79791 0.78205 0.81082 1.20282 1.20742 1.19221 1.20007 0.88583 0.83134 0.84546 1.90499 1.69983 1.58292 1.31080 1.20564 0.93121 0.97367 0.85793 0.87563 1.22155 1.00807 0.95893 1.02827 1.45898 1.21892 1.56769 1.11416 1.20566 0.81077 0.77707 0.91017 1.90686 1.55545 1.57739 1.38637 1.21618 0.98253 1.01842 0.95579 1.20350 0.95815 1.01121 0.93045 1.19990 0.97222 0.94244 0.96352 1.21134 1.00110 0.95721 0.96478 1.21156 0.98188 0.99786 0.94603 1.21135 0.99028 0.94674 0.99812 1.21143 1.00132 0.96140 0.96383 1.21108 0.98190 0.99754 0.94454 0.94402 0.92873 0.94523 0.95290 0.88623 0.87995 0.94981 0.92092 0.89662 0.92339 0.92941 0.75796 0.88855 0.88955 0.90100 0.90054 0.85924 0.86177 0.86345 0.86213 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.91 37.15 0.37 -2.18 16 2 C -0.12 -2.67 5.63 -26.73 -0.15 -2.82 16 3 C 0.14 3.38 4.54 -4.04 -0.02 3.36 16 4 N -0.43 -10.53 2.64 -114.80 -0.30 -10.83 16 5 C -0.34 -8.18 8.46 -14.93 -0.13 -8.31 16 6 H 0.10 2.40 4.76 -52.48 -0.25 2.15 16 7 C 0.04 0.88 5.26 -17.47 -0.09 0.79 16 8 N -0.86 -20.83 7.90 55.50 0.44 -20.39 16 9 Si 0.92 18.92 29.55 -169.99 -5.02 13.89 16 10 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 13 C 0.45 10.54 6.90 -10.99 -0.08 10.47 16 14 O -0.61 -15.25 15.53 5.54 0.09 -15.16 16 15 C 0.14 2.83 2.16 -69.09 -0.15 2.68 16 16 H 0.11 2.38 7.10 -51.93 -0.37 2.01 16 17 C -0.16 -2.88 9.10 37.16 0.34 -2.54 16 18 N -0.71 -12.37 5.02 -54.94 -0.28 -12.65 16 19 C 0.51 8.31 7.79 -10.99 -0.09 8.22 16 20 O -0.55 -10.72 15.64 5.56 0.09 -10.63 16 21 C -0.13 -1.57 5.68 -27.89 -0.16 -1.72 16 22 C -0.07 -0.75 4.63 -27.88 -0.13 -0.88 16 23 C -0.08 -0.81 5.13 -104.62 -0.54 -1.35 16 24 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 26 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 27 C -0.12 -1.05 10.05 -39.59 -0.40 -1.44 16 28 C -0.12 -1.13 9.70 -39.59 -0.38 -1.51 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 2.35 6.11 -51.93 -0.32 2.04 16 34 H 0.10 2.52 5.99 -51.93 -0.31 2.21 16 35 H 0.03 0.77 7.58 -51.93 -0.39 0.38 16 36 H 0.27 6.21 8.31 -40.82 -0.34 5.88 16 37 H 0.08 1.60 5.67 -51.93 -0.29 1.31 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.41 6.72 7.72 -40.82 -0.31 6.41 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.95 8.04 -51.93 -0.42 0.54 16 44 H 0.08 0.99 8.04 -51.93 -0.42 0.58 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 48 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 49 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 397.12 15.07 5.98 5.98 Total: -1.00 -28.47 397.12 -9.50 -37.97 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -7.72 Total: 13.54 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.78 Total: -1.73 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.14 Total: -43.87 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.17 Total: -25.79 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.47 -9.50 -37.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337770836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.109 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds