Wall clock time and date at job start Tue Mar 31 2020 16:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46878 * 2 1 4 4 N 1.46505 * 109.46815 * 179.97438 * 3 2 1 5 5 C 1.37098 * 120.00051 * 262.67767 * 4 3 2 6 6 H 1.08007 * 120.00270 * 200.99760 * 5 4 3 7 7 C 1.38948 * 120.00058 * 20.99369 * 5 4 3 8 8 N 1.31419 * 119.99884 * 3.63225 * 7 5 4 9 9 Si 1.86799 * 120.00296 * 183.62899 * 7 5 4 10 10 H 1.48505 * 109.46889 * 90.00133 * 9 7 5 11 11 H 1.48500 * 109.47218 * 210.00027 * 9 7 5 12 12 H 1.48501 * 109.47264 * 330.00667 * 9 7 5 13 13 C 1.34779 * 120.00206 * 82.68336 * 4 3 2 14 14 O 1.21299 * 119.99778 * 5.77397 * 13 4 3 15 15 C 1.50698 * 120.00219 * 185.77410 * 13 4 3 16 16 H 1.09004 * 109.46849 * 45.47723 * 15 13 4 17 17 C 1.52995 * 109.46994 * 285.47745 * 15 13 4 18 18 N 1.46500 * 109.47128 * 165.47679 * 15 13 4 19 19 C 1.34776 * 119.99942 * 205.00156 * 18 15 13 20 20 O 1.21275 * 119.99909 * 359.97438 * 19 18 15 21 21 C 1.50695 * 119.99977 * 180.02562 * 19 18 15 22 22 C 1.52998 * 109.47182 * 179.97438 * 21 19 18 23 23 C 1.50705 * 109.47371 * 179.97438 * 22 21 19 24 24 C 1.38234 * 119.99853 * 269.72747 * 23 22 21 25 25 C 1.38235 * 119.99931 * 179.76292 * 24 23 22 26 26 C 1.38244 * 119.99803 * 0.50811 * 25 24 23 27 27 C 1.38231 * 119.99701 * 359.74528 * 26 25 24 28 28 C 1.38232 * 120.00385 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47352 * 300.00155 * 1 2 3 31 31 H 1.09005 * 109.47046 * 60.00329 * 1 2 3 32 32 H 1.08998 * 109.47352 * 239.99845 * 2 1 3 33 33 H 1.09005 * 109.47046 * 119.99671 * 2 1 3 34 34 H 1.09006 * 109.47460 * 60.00069 * 3 2 1 35 35 H 1.09000 * 109.47451 * 299.99837 * 3 2 1 36 36 H 0.96997 * 120.00058 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47629 * 52.36054 * 17 15 13 38 38 H 1.09004 * 109.47013 * 172.35453 * 17 15 13 39 39 H 1.09000 * 109.47169 * 292.35646 * 17 15 13 40 40 H 0.97001 * 119.99802 * 24.99959 * 18 15 13 41 41 H 1.09005 * 109.46729 * 299.99455 * 21 19 18 42 42 H 1.08996 * 109.47596 * 59.99404 * 21 19 18 43 43 H 1.09001 * 109.47413 * 300.00041 * 22 21 19 44 44 H 1.09004 * 109.46843 * 59.99845 * 22 21 19 45 45 H 1.08000 * 120.00146 * 359.97438 * 24 23 22 46 46 H 1.07995 * 120.00621 * 180.23594 * 25 24 23 47 47 H 1.07995 * 120.00028 * 179.72393 * 26 25 24 48 48 H 1.08004 * 119.99714 * 179.97438 * 27 26 25 49 49 H 1.07999 * 120.00440 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1899 1.5940 1.1785 6 1 5.2162 1.9304 1.1670 7 6 3.5639 1.3148 2.3871 8 7 2.3394 0.8378 2.3981 9 14 4.4627 1.6176 3.9965 10 1 4.1930 3.0021 4.4611 11 1 3.9870 0.6510 5.0185 12 1 5.9224 1.4406 3.7891 13 6 4.1794 1.2937 -1.1568 14 8 3.5779 1.2649 -2.2098 15 6 5.6806 1.1630 -1.1427 16 1 5.9768 0.4595 -0.3645 17 6 6.3088 2.5293 -0.8611 18 7 6.1404 0.6731 -2.4445 19 6 7.3103 0.0108 -2.5405 20 8 7.9825 -0.1792 -1.5491 21 6 7.7835 -0.4926 -3.8797 22 6 9.1282 -1.2027 -3.7114 23 6 9.6012 -1.7068 -5.0506 24 6 9.2524 -2.9756 -5.4740 25 6 9.6822 -3.4361 -6.7045 26 6 10.4695 -2.6317 -7.5071 27 6 10.8226 -1.3649 -7.0813 28 6 10.3889 -0.9026 -5.8529 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6765 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.9025 0.6426 3.2418 37 1 5.8650 2.9548 0.0390 38 1 7.3828 2.4125 -0.7162 39 1 6.1262 3.1941 -1.7053 40 1 5.6028 0.8254 -3.2375 41 1 7.0513 -1.1914 -4.2845 42 1 7.9000 0.3481 -4.5635 43 1 9.8602 -0.5037 -3.3068 44 1 9.0120 -2.0435 -3.0275 45 1 8.6413 -3.6059 -4.8450 46 1 9.4066 -4.4260 -7.0371 47 1 10.8090 -2.9931 -8.4665 48 1 11.4381 -0.7365 -7.7081 49 1 10.6651 0.0870 -5.5201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337770836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:13 Heat of formation + Delta-G solvation = -66.969781 kcal Electronic energy + Delta-G solvation = -28281.864471 eV Core-core repulsion = 24401.077193 eV Total energy + Delta-G solvation = -3880.787278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.32648 -40.39117 -39.83449 -37.30012 -35.91047 -34.94190 -34.09873 -33.44535 -31.84544 -31.72552 -30.21074 -27.60998 -26.77877 -25.90671 -24.23614 -23.41245 -22.36445 -21.81090 -21.17747 -20.98898 -19.38585 -18.45022 -17.62515 -17.19238 -16.98106 -16.74345 -16.13581 -16.04227 -15.91651 -15.73494 -15.57402 -15.30608 -14.95878 -14.55484 -14.32881 -14.15459 -13.97392 -13.85357 -13.65794 -13.65236 -13.43872 -13.09490 -13.03873 -12.78933 -12.64527 -12.54490 -12.41303 -12.18890 -12.13537 -12.06874 -11.92681 -11.86706 -11.70639 -11.46960 -10.93308 -10.74746 -10.42990 -10.03641 -9.77827 -9.62304 -9.57602 -8.19241 -5.94353 0.46856 0.54371 1.41538 1.49797 1.58699 1.64403 1.92055 2.14531 2.33267 2.91839 3.01815 3.14907 3.66422 3.95280 4.02084 4.05616 4.19640 4.23842 4.27154 4.31251 4.31761 4.38362 4.43028 4.52672 4.64000 4.66694 4.70078 4.71353 4.78664 4.87583 4.92737 4.96852 5.09561 5.11212 5.12347 5.23040 5.23849 5.25559 5.33048 5.38797 5.51617 5.62265 5.62902 5.67114 5.77409 5.84180 5.93704 6.16921 6.49087 6.60661 7.10966 7.25225 7.55061 7.93152 8.72984 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002426 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.242417 B =11540.190742 C =12343.992021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 C 0.145 3.855 4 N -0.443 5.443 5 C -0.358 4.358 6 H 0.112 0.888 7 C 0.000 4.000 8 N -0.876 5.876 9 Si 0.985 3.015 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.441 3.559 14 O -0.631 6.631 15 C 0.147 3.853 16 H 0.083 0.917 17 C -0.147 4.147 18 N -0.707 5.707 19 C 0.510 3.490 20 O -0.582 6.582 21 C -0.121 4.121 22 C -0.058 4.058 23 C -0.091 4.091 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.125 4.125 28 C -0.127 4.127 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.010 0.990 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.024 0.976 36 H 0.270 0.730 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.412 0.588 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.189 -3.556 -13.400 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.022 3.978 4 N -0.159 5.159 5 C -0.486 4.486 6 H 0.130 0.870 7 C -0.203 4.203 8 N -0.514 5.514 9 Si 0.809 3.191 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.230 3.770 14 O -0.520 6.520 15 C 0.039 3.961 16 H 0.101 0.899 17 C -0.206 4.206 18 N -0.359 5.359 19 C 0.298 3.702 20 O -0.463 6.463 21 C -0.160 4.160 22 C -0.096 4.096 23 C -0.091 4.091 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.143 4.143 28 C -0.145 4.145 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.249 0.751 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.143 0.857 46 H 0.156 0.844 47 H 0.159 0.841 48 H 0.159 0.841 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.172 -3.745 -13.012 17.555 hybrid contribution -0.239 0.113 0.767 0.811 sum 10.934 -3.632 -12.245 16.813 Atomic orbital electron populations 1.21482 0.94640 1.01181 1.00998 1.21665 0.96353 0.97102 0.99521 1.21246 0.79867 0.97434 0.99242 1.43920 1.06079 1.59908 1.05962 1.20239 0.99277 1.45755 0.83288 0.87049 1.26097 0.96897 0.95036 1.02255 1.70165 1.12803 1.40938 1.27524 0.85029 0.78600 0.78067 0.77356 1.19660 1.20857 1.19153 1.20507 0.89902 0.82586 0.84016 1.90467 1.70788 1.59165 1.31590 1.20316 0.91049 0.98016 0.86731 0.89902 1.22050 1.00961 0.94684 1.02884 1.45904 1.22457 1.57125 1.10440 1.21346 0.80037 0.76512 0.92287 1.90669 1.56387 1.58874 1.40343 1.21623 0.98589 1.02841 0.92976 1.20229 0.95390 1.00353 0.93633 1.19915 0.98353 0.94847 0.95964 1.21293 1.00614 0.95764 0.97220 1.21431 0.98039 1.00745 0.94238 1.21483 0.98343 0.94520 1.00607 1.21450 1.00023 0.96594 0.96237 1.21300 0.98129 1.00202 0.94865 0.92484 0.92681 0.93439 0.97106 0.90638 0.88934 0.95754 0.91928 0.90445 0.91437 0.91786 0.75116 0.87502 0.86569 0.90776 0.91475 0.85694 0.84436 0.84111 0.84139 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.91 71.98 0.71 -3.91 16 2 C -0.11 -4.94 5.63 30.59 0.17 -4.77 16 3 C 0.14 7.03 4.54 86.38 0.39 7.42 16 4 N -0.44 -22.01 2.64 -635.51 -1.68 -23.69 16 5 C -0.36 -17.51 8.46 84.04 0.71 -16.80 16 6 H 0.11 5.17 4.76 -2.91 -0.01 5.15 16 7 C 0.00 0.00 5.26 84.92 0.45 0.45 16 8 N -0.88 -42.58 7.90 21.66 0.17 -42.41 16 9 Si 0.99 38.61 29.55 68.60 2.03 40.64 16 10 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 11 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 12 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 13 C 0.44 21.03 6.90 87.66 0.60 21.63 16 14 O -0.63 -31.86 15.53 -3.09 -0.05 -31.91 16 15 C 0.15 6.06 2.16 44.24 0.10 6.15 16 16 H 0.08 3.81 7.10 -2.38 -0.02 3.79 16 17 C -0.15 -5.31 9.10 71.98 0.65 -4.66 16 18 N -0.71 -24.59 5.02 -446.11 -2.24 -26.83 16 19 C 0.51 16.45 7.79 87.66 0.68 17.13 16 20 O -0.58 -23.00 15.64 -3.02 -0.05 -23.04 16 21 C -0.12 -2.71 5.68 29.85 0.17 -2.54 16 22 C -0.06 -1.30 4.63 29.85 0.14 -1.16 16 23 C -0.09 -1.80 5.13 -19.86 -0.10 -1.90 16 24 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 25 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 26 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 27 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 28 C -0.13 -2.24 9.70 22.27 0.22 -2.02 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 3.78 6.11 -2.38 -0.01 3.76 16 34 H 0.09 4.65 5.99 -2.38 -0.01 4.64 16 35 H 0.02 1.19 7.58 -2.39 -0.02 1.17 16 36 H 0.27 12.50 8.31 -92.71 -0.77 11.73 16 37 H 0.08 2.91 5.67 -2.39 -0.01 2.89 16 38 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.41 13.44 7.72 -92.71 -0.72 12.72 16 41 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 42 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.07 1.73 8.04 -2.39 -0.02 1.72 16 44 H 0.07 1.67 8.04 -2.38 -0.02 1.65 16 45 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 46 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 48 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 49 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -61.28 397.12 4.20 -57.09 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: 0.23 Total: 42.58 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 5.78 Total: 7.57 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -3.75 Total: -92.93 kcal Atomic # 8 Polarization: -54.86 SS G_CDS: -0.10 Total: -54.95 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -61.28 4.20 -57.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337770836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.884 kcal (2) G-P(sol) polarization free energy of solvation -61.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds