Wall clock time and date at job start Tue Mar 31 2020 16:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47143 * 2 1 4 4 N 1.46504 * 109.47110 * 179.97438 * 3 2 1 5 5 C 1.37098 * 120.00254 * 269.99911 * 4 3 2 6 6 H 1.08001 * 119.99351 * 53.23173 * 5 4 3 7 7 C 1.38948 * 120.00231 * 233.22813 * 5 4 3 8 8 N 1.31408 * 119.99936 * 199.01978 * 7 5 4 9 9 Si 1.86801 * 119.99880 * 19.02175 * 7 5 4 10 10 H 1.48498 * 109.47325 * 95.04409 * 9 7 5 11 11 H 1.48497 * 109.47014 * 215.04945 * 9 7 5 12 12 H 1.48496 * 109.47071 * 335.04548 * 9 7 5 13 13 C 1.34776 * 119.99794 * 90.00310 * 4 3 2 14 14 O 1.21300 * 119.99637 * 5.05277 * 13 4 3 15 15 C 1.50700 * 120.00167 * 185.05180 * 13 4 3 16 16 H 1.09003 * 109.46906 * 315.82331 * 15 13 4 17 17 C 1.52996 * 109.47111 * 75.82029 * 15 13 4 18 18 N 1.46499 * 109.47074 * 195.82216 * 15 13 4 19 19 C 1.34778 * 119.99859 * 152.37879 * 18 15 13 20 20 O 1.21275 * 119.99814 * 4.91217 * 19 18 15 21 21 C 1.50696 * 120.00106 * 184.90560 * 19 18 15 22 22 C 1.52997 * 109.47427 * 180.02562 * 21 19 18 23 23 C 1.50696 * 109.47427 * 180.02562 * 22 21 19 24 24 C 1.38238 * 120.00303 * 269.72345 * 23 22 21 25 25 C 1.38231 * 119.99953 * 179.76313 * 24 23 22 26 26 C 1.38230 * 120.00484 * 0.51189 * 25 24 23 27 27 C 1.38243 * 119.99822 * 359.74464 * 26 25 24 28 28 C 1.38234 * 119.99658 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47266 * 299.99979 * 1 2 3 31 31 H 1.09002 * 109.47363 * 59.99561 * 1 2 3 32 32 H 1.08995 * 109.47276 * 240.00132 * 2 1 3 33 33 H 1.08997 * 109.47288 * 119.99961 * 2 1 3 34 34 H 1.09003 * 109.46689 * 60.00142 * 3 2 1 35 35 H 1.09002 * 109.47350 * 300.00447 * 3 2 1 36 36 H 0.97001 * 119.99774 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47212 * 294.61170 * 17 15 13 38 38 H 1.09002 * 109.47023 * 54.60634 * 17 15 13 39 39 H 1.08994 * 109.47554 * 174.60349 * 17 15 13 40 40 H 0.97006 * 120.00160 * 332.65632 * 18 15 13 41 41 H 1.09001 * 109.47134 * 300.00568 * 21 19 18 42 42 H 1.09001 * 109.47433 * 59.99716 * 21 19 18 43 43 H 1.09008 * 109.46876 * 299.99767 * 22 21 19 44 44 H 1.08998 * 109.47591 * 59.99727 * 22 21 19 45 45 H 1.08003 * 119.99664 * 0.02562 * 24 23 22 46 46 H 1.08001 * 119.99869 * 180.22826 * 25 24 23 47 47 H 1.07994 * 120.00518 * 179.72348 * 26 25 24 48 48 H 1.07993 * 119.99920 * 179.97438 * 27 26 25 49 49 H 1.08002 * 119.99963 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.4427 1.1882 6 1 3.9748 0.6935 1.9357 7 6 5.1612 2.4066 1.4299 8 7 6.0643 2.2096 2.3639 9 14 5.1829 3.9826 0.4273 10 1 4.4511 5.0462 1.1610 11 1 6.5879 4.4098 0.2071 12 1 4.5268 3.7444 -0.8834 13 6 4.1794 1.4424 -1.1663 14 8 3.5767 1.5348 -2.2150 15 6 5.6820 1.3275 -1.1683 16 1 6.0973 1.9808 -0.4010 17 6 6.0831 -0.1200 -0.8775 18 7 6.2003 1.7237 -2.4800 19 6 7.4425 2.2356 -2.5871 20 8 8.1637 2.2857 -1.6134 21 6 7.9352 2.7455 -3.9168 22 6 9.3650 3.2683 -3.7645 23 6 9.8576 3.7788 -5.0941 24 6 10.5142 2.9261 -5.9617 25 6 10.9616 3.3932 -7.1834 26 6 10.7619 4.7156 -7.5330 27 6 10.1100 5.5696 -6.6632 28 6 9.6574 5.1011 -5.4440 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 6.7421 2.8826 2.5329 37 1 5.7810 -0.3842 0.1360 38 1 5.5901 -0.7835 -1.5880 39 1 7.1639 -0.2239 -0.9732 40 1 5.6480 1.6215 -3.2709 41 1 7.9209 1.9345 -4.6449 42 1 7.2875 3.5525 -4.2592 43 1 9.3797 4.0793 -3.0363 44 1 10.0126 2.4610 -3.4224 45 1 10.6738 1.8939 -5.6868 46 1 11.4713 2.7261 -7.8628 47 1 11.1154 5.0816 -8.4856 48 1 9.9543 6.6028 -6.9362 49 1 9.1485 5.7684 -4.7642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337770841.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:19 Heat of formation + Delta-G solvation = -56.037932 kcal Electronic energy + Delta-G solvation = -28841.460338 eV Core-core repulsion = 24961.147101 eV Total energy + Delta-G solvation = -3880.313237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.96447 -39.39496 -38.56717 -35.41451 -34.51826 -33.92900 -33.25444 -31.58180 -31.03641 -30.57585 -29.10938 -26.25080 -24.97490 -24.51361 -22.98003 -22.71436 -21.26206 -20.82840 -19.98051 -19.26216 -17.86692 -16.97763 -16.29036 -16.16284 -15.73024 -15.33435 -15.11837 -14.90569 -14.77003 -14.29569 -14.16966 -13.76743 -13.58356 -13.48433 -13.20330 -13.14300 -12.90802 -12.71444 -12.67444 -12.24607 -11.98170 -11.88436 -11.53591 -11.44271 -11.35426 -11.33718 -11.14305 -11.10530 -10.93310 -10.86962 -10.76830 -10.43653 -10.08876 -10.01636 -9.50181 -9.16869 -9.07572 -8.81645 -8.73222 -8.49152 -7.63873 -6.54803 -4.31749 1.19695 1.24705 2.99823 3.08366 3.24691 3.25205 3.44566 3.61759 3.70068 4.07663 4.43667 4.68832 4.71124 4.82944 4.84687 4.96359 5.05408 5.12241 5.28450 5.40464 5.40744 5.46653 5.52587 5.61596 5.68905 5.77471 5.85423 5.87139 5.95723 5.98575 6.03664 6.09524 6.17020 6.27668 6.31681 6.32001 6.35195 6.39712 6.44142 6.54211 6.59814 6.70190 6.83805 6.85563 6.86334 7.03855 7.62873 7.65919 7.98334 8.40053 8.63926 8.88276 9.16223 9.59421 10.53333 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002863 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.593270 B = 9776.742470 C =10333.783814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.464 5.464 5 C -0.360 4.360 6 H 0.101 0.899 7 C 0.080 3.920 8 N -0.843 5.843 9 Si 0.845 3.155 10 H -0.276 1.276 11 H -0.270 1.270 12 H -0.256 1.256 13 C 0.491 3.509 14 O -0.595 6.595 15 C 0.127 3.873 16 H 0.118 0.882 17 C -0.139 4.139 18 N -0.715 5.715 19 C 0.505 3.495 20 O -0.537 6.537 21 C -0.133 4.133 22 C -0.067 4.067 23 C -0.077 4.077 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.129 4.129 27 C -0.119 4.119 28 C -0.117 4.117 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.279 0.721 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.404 0.596 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 1.401 -14.266 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.014 4.014 4 N -0.184 5.184 5 C -0.487 4.487 6 H 0.119 0.881 7 C -0.130 4.130 8 N -0.476 5.476 9 Si 0.670 3.330 10 H -0.202 1.202 11 H -0.195 1.195 12 H -0.180 1.180 13 C 0.280 3.720 14 O -0.480 6.480 15 C 0.020 3.980 16 H 0.136 0.864 17 C -0.198 4.198 18 N -0.368 5.368 19 C 0.291 3.709 20 O -0.414 6.414 21 C -0.173 4.173 22 C -0.105 4.105 23 C -0.077 4.077 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.147 4.147 27 C -0.137 4.137 28 C -0.135 4.135 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.240 0.760 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.739 1.553 -13.904 14.771 hybrid contribution -0.208 0.945 -0.661 1.172 sum 4.531 2.498 -14.565 15.456 Atomic orbital electron populations 1.21692 0.96255 1.00984 1.01437 1.21798 0.94885 0.98339 1.02128 1.21551 0.82518 0.95858 1.01483 1.43566 1.04092 1.65562 1.05180 1.18896 1.19497 1.15188 0.95096 0.88101 1.25557 0.94888 0.97214 0.95353 1.69674 1.12647 1.34499 1.30796 0.87270 0.78989 0.84767 0.81998 1.20175 1.19461 1.17985 1.20463 0.89251 0.78196 0.84076 1.90502 1.70318 1.55245 1.31969 1.20874 0.92421 0.99313 0.85402 0.86434 1.21829 1.00967 0.93571 1.03424 1.45956 1.15805 1.64130 1.10859 1.20623 0.81722 0.77645 0.90894 1.90732 1.55282 1.55913 1.39476 1.21629 0.97518 1.02467 0.95677 1.20365 0.94728 1.02121 0.93288 1.19991 0.97676 0.93835 0.96215 1.21111 0.98594 0.99704 0.94041 1.21139 1.00124 0.95834 0.96688 1.21129 0.99907 0.94005 0.99622 1.21148 0.98576 0.99687 0.94315 1.21139 1.00070 0.95385 0.96898 0.93209 0.92868 0.93048 0.92366 0.91714 0.91047 0.91850 0.91005 0.89273 0.93506 0.92369 0.76031 0.88846 0.88924 0.90067 0.89916 0.85949 0.86194 0.86342 0.86194 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.13 -2.30 6.26 -26.73 -0.17 -2.47 16 3 C 0.11 2.20 5.42 -4.04 -0.02 2.17 16 4 N -0.46 -10.86 1.93 -114.81 -0.22 -11.09 16 5 C -0.36 -9.10 8.21 -14.93 -0.12 -9.23 16 6 H 0.10 2.68 8.06 -52.49 -0.42 2.25 16 7 C 0.08 2.10 4.01 -17.47 -0.07 2.03 16 8 N -0.84 -23.12 13.96 55.50 0.77 -22.34 16 9 Si 0.85 21.08 25.16 -169.99 -4.28 16.80 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.26 -6.50 5.62 56.52 0.32 -6.19 16 13 C 0.49 11.61 4.49 -10.99 -0.05 11.56 16 14 O -0.60 -14.44 15.45 5.54 0.09 -14.36 16 15 C 0.13 2.86 1.53 -69.08 -0.11 2.75 16 16 H 0.12 2.98 2.75 -51.93 -0.14 2.84 16 17 C -0.14 -2.87 9.38 37.16 0.35 -2.52 16 18 N -0.71 -13.85 4.99 -54.94 -0.27 -14.12 16 19 C 0.51 9.31 7.81 -10.99 -0.09 9.23 16 20 O -0.54 -11.93 15.65 5.56 0.09 -11.84 16 21 C -0.13 -1.77 5.68 -27.89 -0.16 -1.92 16 22 C -0.07 -0.87 4.63 -27.89 -0.13 -1.00 16 23 C -0.08 -0.88 5.13 -104.62 -0.54 -1.42 16 24 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 25 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 26 C -0.13 -1.17 10.05 -39.58 -0.40 -1.56 16 27 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 28 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.37 8.04 -51.93 -0.42 0.96 16 35 H 0.06 1.29 7.36 -51.93 -0.38 0.91 16 36 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.09 1.95 7.19 -51.93 -0.37 1.58 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.40 7.08 7.77 -40.82 -0.32 6.77 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.08 1.14 8.04 -51.92 -0.42 0.72 16 44 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 45 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -30.69 398.12 -8.55 -39.24 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -8.03 Total: 12.03 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.69 Total: -0.32 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.28 Total: -47.55 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: 0.17 Total: -26.20 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.28 Total: 16.80 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.69 -8.55 -39.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337770841.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.799 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds