Wall clock time and date at job start Tue Mar 31 2020 16:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47143 * 2 1 4 4 N 1.46504 * 109.47110 * 179.97438 * 3 2 1 5 5 C 1.37098 * 120.00254 * 269.99911 * 4 3 2 6 6 H 1.08001 * 119.99351 * 53.23173 * 5 4 3 7 7 C 1.38948 * 120.00231 * 233.22813 * 5 4 3 8 8 N 1.31408 * 119.99936 * 199.01978 * 7 5 4 9 9 Si 1.86801 * 119.99880 * 19.02175 * 7 5 4 10 10 H 1.48498 * 109.47325 * 95.04409 * 9 7 5 11 11 H 1.48497 * 109.47014 * 215.04945 * 9 7 5 12 12 H 1.48496 * 109.47071 * 335.04548 * 9 7 5 13 13 C 1.34776 * 119.99794 * 90.00310 * 4 3 2 14 14 O 1.21300 * 119.99637 * 5.05277 * 13 4 3 15 15 C 1.50700 * 120.00167 * 185.05180 * 13 4 3 16 16 H 1.09003 * 109.46906 * 315.82331 * 15 13 4 17 17 C 1.52996 * 109.47111 * 75.82029 * 15 13 4 18 18 N 1.46499 * 109.47074 * 195.82216 * 15 13 4 19 19 C 1.34778 * 119.99859 * 152.37879 * 18 15 13 20 20 O 1.21275 * 119.99814 * 4.91217 * 19 18 15 21 21 C 1.50696 * 120.00106 * 184.90560 * 19 18 15 22 22 C 1.52997 * 109.47427 * 180.02562 * 21 19 18 23 23 C 1.50696 * 109.47427 * 180.02562 * 22 21 19 24 24 C 1.38238 * 120.00303 * 269.72345 * 23 22 21 25 25 C 1.38231 * 119.99953 * 179.76313 * 24 23 22 26 26 C 1.38230 * 120.00484 * 0.51189 * 25 24 23 27 27 C 1.38243 * 119.99822 * 359.74464 * 26 25 24 28 28 C 1.38234 * 119.99658 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47266 * 299.99979 * 1 2 3 31 31 H 1.09002 * 109.47363 * 59.99561 * 1 2 3 32 32 H 1.08995 * 109.47276 * 240.00132 * 2 1 3 33 33 H 1.08997 * 109.47288 * 119.99961 * 2 1 3 34 34 H 1.09003 * 109.46689 * 60.00142 * 3 2 1 35 35 H 1.09002 * 109.47350 * 300.00447 * 3 2 1 36 36 H 0.97001 * 119.99774 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47212 * 294.61170 * 17 15 13 38 38 H 1.09002 * 109.47023 * 54.60634 * 17 15 13 39 39 H 1.08994 * 109.47554 * 174.60349 * 17 15 13 40 40 H 0.97006 * 120.00160 * 332.65632 * 18 15 13 41 41 H 1.09001 * 109.47134 * 300.00568 * 21 19 18 42 42 H 1.09001 * 109.47433 * 59.99716 * 21 19 18 43 43 H 1.09008 * 109.46876 * 299.99767 * 22 21 19 44 44 H 1.08998 * 109.47591 * 59.99727 * 22 21 19 45 45 H 1.08003 * 119.99664 * 0.02562 * 24 23 22 46 46 H 1.08001 * 119.99869 * 180.22826 * 25 24 23 47 47 H 1.07994 * 120.00518 * 179.72348 * 26 25 24 48 48 H 1.07993 * 119.99920 * 179.97438 * 27 26 25 49 49 H 1.08002 * 119.99963 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.4427 1.1882 6 1 3.9748 0.6935 1.9357 7 6 5.1612 2.4066 1.4299 8 7 6.0643 2.2096 2.3639 9 14 5.1829 3.9826 0.4273 10 1 4.4511 5.0462 1.1610 11 1 6.5879 4.4098 0.2071 12 1 4.5268 3.7444 -0.8834 13 6 4.1794 1.4424 -1.1663 14 8 3.5767 1.5348 -2.2150 15 6 5.6820 1.3275 -1.1683 16 1 6.0973 1.9808 -0.4010 17 6 6.0831 -0.1200 -0.8775 18 7 6.2003 1.7237 -2.4800 19 6 7.4425 2.2356 -2.5871 20 8 8.1637 2.2857 -1.6134 21 6 7.9352 2.7455 -3.9168 22 6 9.3650 3.2683 -3.7645 23 6 9.8576 3.7788 -5.0941 24 6 10.5142 2.9261 -5.9617 25 6 10.9616 3.3932 -7.1834 26 6 10.7619 4.7156 -7.5330 27 6 10.1100 5.5696 -6.6632 28 6 9.6574 5.1011 -5.4440 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 6.7421 2.8826 2.5329 37 1 5.7810 -0.3842 0.1360 38 1 5.5901 -0.7835 -1.5880 39 1 7.1639 -0.2239 -0.9732 40 1 5.6480 1.6215 -3.2709 41 1 7.9209 1.9345 -4.6449 42 1 7.2875 3.5525 -4.2592 43 1 9.3797 4.0793 -3.0363 44 1 10.0126 2.4610 -3.4224 45 1 10.6738 1.8939 -5.6868 46 1 11.4713 2.7261 -7.8628 47 1 11.1154 5.0816 -8.4856 48 1 9.9543 6.6028 -6.9362 49 1 9.1485 5.7684 -4.7642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337770841.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:18 Heat of formation + Delta-G solvation = -73.242334 kcal Electronic energy + Delta-G solvation = -28842.206377 eV Core-core repulsion = 24961.147101 eV Total energy + Delta-G solvation = -3881.059276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.60150 -40.54610 -39.91295 -37.16435 -36.20734 -35.01300 -34.90631 -33.40900 -31.97798 -31.76011 -30.24943 -27.85787 -26.58856 -25.98001 -24.47858 -23.44510 -22.51385 -22.00588 -21.45051 -21.09608 -19.53901 -18.14260 -17.97869 -17.45445 -17.13968 -16.84388 -16.62933 -16.14201 -15.91301 -15.77854 -15.73518 -15.39495 -15.10728 -14.73714 -14.62671 -14.33305 -14.11005 -14.03597 -13.85232 -13.69931 -13.48298 -13.21118 -13.16011 -12.95814 -12.85400 -12.81109 -12.67334 -12.35193 -12.25695 -12.18472 -12.00818 -11.91005 -11.75480 -11.52626 -11.15860 -10.98458 -10.62262 -10.17396 -9.81146 -9.61491 -9.53896 -8.62355 -6.37486 0.43155 0.51085 1.06959 1.18936 1.22098 1.51593 1.71245 1.97786 2.06564 2.68883 2.82474 2.89943 3.58900 3.83520 3.89578 3.96870 4.13651 4.16428 4.17352 4.21876 4.23518 4.27398 4.31004 4.34518 4.50853 4.56195 4.61681 4.66313 4.68709 4.77305 4.80155 4.88447 4.91377 5.04077 5.04306 5.16712 5.19098 5.19362 5.19859 5.29488 5.38502 5.45145 5.59017 5.62424 5.63806 5.73727 5.77207 6.13513 6.35876 6.49523 6.85464 7.14633 7.24781 7.65902 8.48397 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002863 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.593270 B = 9776.742470 C =10333.783814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.103 3.897 4 N -0.472 5.472 5 C -0.344 4.344 6 H 0.086 0.914 7 C 0.056 3.944 8 N -0.873 5.873 9 Si 0.886 3.114 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.262 1.262 13 C 0.489 3.511 14 O -0.602 6.602 15 C 0.122 3.878 16 H 0.091 0.909 17 C -0.129 4.129 18 N -0.712 5.712 19 C 0.502 3.498 20 O -0.579 6.579 21 C -0.120 4.120 22 C -0.061 4.061 23 C -0.091 4.091 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.130 4.130 27 C -0.125 4.125 28 C -0.133 4.133 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.279 0.721 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.414 0.586 41 H 0.123 0.877 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.132 0.868 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.138 0.862 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 1.394 -16.755 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C -0.019 4.019 4 N -0.193 5.193 5 C -0.471 4.471 6 H 0.104 0.896 7 C -0.151 4.151 8 N -0.508 5.508 9 Si 0.712 3.288 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.187 1.187 13 C 0.278 3.722 14 O -0.487 6.487 15 C 0.014 3.986 16 H 0.108 0.892 17 C -0.187 4.187 18 N -0.366 5.366 19 C 0.290 3.710 20 O -0.459 6.459 21 C -0.160 4.160 22 C -0.099 4.099 23 C -0.091 4.091 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.143 4.143 28 C -0.151 4.151 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.252 0.748 41 H 0.141 0.859 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.150 0.850 46 H 0.161 0.839 47 H 0.161 0.839 48 H 0.156 0.844 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.091 1.549 -16.414 16.987 hybrid contribution -0.012 0.919 0.058 0.921 sum 4.080 2.468 -16.356 17.037 Atomic orbital electron populations 1.21644 0.93163 1.02551 1.02271 1.21711 0.97503 0.95950 1.01182 1.21767 0.80416 0.97971 1.01781 1.43713 1.05546 1.65546 1.04482 1.18709 1.19152 1.14189 0.95084 0.89594 1.25844 0.94896 0.98588 0.95739 1.69723 1.13514 1.35144 1.32396 0.86652 0.77783 0.83448 0.80949 1.19345 1.21180 1.18693 1.20660 0.89724 0.77822 0.84034 1.90484 1.70648 1.55559 1.32016 1.20736 0.91730 0.99679 0.86440 0.89191 1.21718 1.01223 0.92990 1.02815 1.45944 1.16342 1.64293 1.09995 1.21540 0.80807 0.76416 0.92237 1.90714 1.56279 1.57429 1.41465 1.21657 0.97699 1.03672 0.92973 1.20239 0.94448 1.01168 0.93996 1.19871 0.99102 0.94449 0.95685 1.21295 0.98500 1.00127 0.94411 1.21460 0.99665 0.96445 0.96524 1.21496 0.98973 0.93868 1.00409 1.21422 0.98232 1.00843 0.93831 1.21274 1.00744 0.95323 0.97739 0.91317 0.91807 0.92460 0.93547 0.92394 0.90244 0.91978 0.91065 0.91132 0.91467 0.92162 0.74837 0.85863 0.87463 0.92068 0.90656 0.85033 0.83903 0.83880 0.84369 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.91 71.98 0.71 -2.74 16 2 C -0.12 -4.15 6.26 30.59 0.19 -3.96 16 3 C 0.10 4.03 5.42 86.38 0.47 4.50 16 4 N -0.47 -21.99 1.93 -635.51 -1.22 -23.21 16 5 C -0.34 -17.53 8.21 84.04 0.69 -16.84 16 6 H 0.09 4.63 8.06 -2.91 -0.02 4.61 16 7 C 0.06 3.01 4.01 84.93 0.34 3.35 16 8 N -0.87 -48.93 13.96 21.66 0.30 -48.63 16 9 Si 0.89 44.23 25.16 68.60 1.73 45.95 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 12 H -0.26 -13.24 5.62 99.48 0.56 -12.68 16 13 C 0.49 22.87 4.49 87.66 0.39 23.26 16 14 O -0.60 -28.52 15.45 -3.09 -0.05 -28.56 16 15 C 0.12 5.51 1.53 44.24 0.07 5.58 16 16 H 0.09 4.64 2.75 -2.39 -0.01 4.64 16 17 C -0.13 -5.31 9.38 71.98 0.68 -4.64 16 18 N -0.71 -27.21 4.99 -446.11 -2.23 -29.44 16 19 C 0.50 18.41 7.81 87.66 0.68 19.10 16 20 O -0.58 -26.34 15.65 -3.01 -0.05 -26.39 16 21 C -0.12 -3.07 5.68 29.85 0.17 -2.90 16 22 C -0.06 -1.56 4.63 29.85 0.14 -1.42 16 23 C -0.09 -2.00 5.13 -19.87 -0.10 -2.10 16 24 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 25 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 26 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 27 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 28 C -0.13 -2.76 9.70 22.27 0.22 -2.54 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 2.96 8.04 -2.39 -0.02 2.94 16 35 H 0.06 2.45 7.36 -2.39 -0.02 2.44 16 36 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.07 3.14 7.19 -2.39 -0.02 3.13 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.41 13.99 7.77 -92.70 -0.72 13.27 16 41 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.06 1.78 8.04 -2.38 -0.02 1.76 16 44 H 0.07 2.00 8.04 -2.39 -0.02 1.99 16 45 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 46 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 47 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 48 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 49 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -66.48 398.12 4.08 -62.40 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.07 Total: 36.83 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.53 Total: 11.05 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -3.15 Total: -101.28 kcal Atomic # 8 Polarization: -54.86 SS G_CDS: -0.09 Total: -54.95 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.73 Total: 45.95 kcal Total: -66.48 4.08 -62.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337770841.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.843 kcal (2) G-P(sol) polarization free energy of solvation -66.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds