Wall clock time and date at job start Tue Mar 31 2020 16:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46772 * 2 1 4 4 N 1.46498 * 109.46912 * 180.02562 * 3 2 1 5 5 C 1.46506 * 120.00239 * 85.00063 * 4 3 2 6 6 C 1.52997 * 109.46691 * 274.72301 * 5 4 3 7 7 C 1.53003 * 117.49562 * 243.62008 * 6 5 4 8 8 C 1.53008 * 117.49856 * 174.99761 * 6 5 4 9 9 S 1.65597 * 119.99910 * 264.71837 * 4 3 2 10 10 O 1.42101 * 106.40154 * 23.82013 * 9 4 3 11 11 O 1.42106 * 106.40098 * 156.73670 * 9 4 3 12 12 N 1.65596 * 107.22389 * 270.27980 * 9 4 3 13 13 C 1.46498 * 119.99862 * 64.99463 * 12 9 4 14 14 C 1.53001 * 109.46987 * 165.00307 * 13 12 9 15 15 C 1.52995 * 109.47314 * 300.00067 * 14 13 12 16 16 C 1.53005 * 109.47204 * 60.00521 * 14 13 12 17 17 C 1.53005 * 109.47262 * 180.02562 * 14 13 12 18 18 C 1.50697 * 109.47243 * 180.02562 * 17 14 13 19 19 H 1.07996 * 119.99912 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99743 * 180.02562 * 18 17 14 21 21 N 1.31515 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99768 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47094 * 89.99943 * 22 20 18 24 24 H 1.48499 * 109.46972 * 210.00110 * 22 20 18 25 25 H 1.48500 * 109.46697 * 329.99789 * 22 20 18 26 26 H 1.09003 * 109.46803 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47682 * 299.99782 * 1 2 3 28 28 H 1.09003 * 109.47413 * 60.00427 * 1 2 3 29 29 H 1.08999 * 109.47682 * 240.00218 * 2 1 3 30 30 H 1.09003 * 109.47413 * 119.99573 * 2 1 3 31 31 H 1.08990 * 109.47056 * 59.99695 * 3 2 1 32 32 H 1.09003 * 109.46803 * 299.99946 * 3 2 1 33 33 H 1.08999 * 109.47194 * 34.71912 * 5 4 3 34 34 H 1.08998 * 109.47440 * 154.72121 * 5 4 3 35 35 H 1.08997 * 115.55768 * 29.32740 * 6 5 4 36 36 H 1.08991 * 117.50093 * 359.97438 * 7 6 5 37 37 H 1.09003 * 117.50144 * 145.02693 * 7 6 5 38 38 H 1.08993 * 117.49898 * 214.97836 * 8 6 5 39 39 H 1.09000 * 117.49448 * 0.02562 * 8 6 5 40 40 H 0.97000 * 119.99918 * 245.00321 * 12 9 4 41 41 H 1.09005 * 109.47365 * 285.00417 * 13 12 9 42 42 H 1.09000 * 109.47259 * 45.00301 * 13 12 9 43 43 H 1.08999 * 109.46791 * 60.00003 * 15 14 13 44 44 H 1.09004 * 109.47027 * 179.97438 * 15 14 13 45 45 H 1.08997 * 109.47406 * 300.00013 * 15 14 13 46 46 H 1.09003 * 109.47063 * 59.99320 * 16 14 13 47 47 H 1.08991 * 109.47463 * 179.97438 * 16 14 13 48 48 H 1.08999 * 109.46878 * 299.99983 * 16 14 13 49 49 H 1.09003 * 109.46838 * 300.00578 * 17 14 13 50 50 H 1.09000 * 109.47236 * 59.99840 * 17 14 13 51 51 H 0.96999 * 119.99680 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2369 1.3323 -1.2649 6 6 4.3889 -0.1435 -1.6389 7 6 5.8071 -0.7144 -1.6995 8 6 5.0260 -0.4674 -2.9918 9 16 4.3334 1.5745 1.4271 10 8 3.4545 1.1155 2.4450 11 8 5.6186 1.0127 1.1985 12 7 4.5720 3.1888 1.7083 13 6 3.4250 4.0675 1.9503 14 6 3.9128 5.3918 2.5411 15 6 4.6381 5.1248 3.8615 16 6 4.8731 6.0656 1.5588 17 6 2.7149 6.3093 2.7944 18 6 3.1954 7.6140 3.3758 19 1 4.2497 7.7727 3.5478 20 6 2.2889 8.6045 3.6890 21 7 1.0049 8.4110 3.4800 22 14 2.8846 10.2220 4.4090 23 1 3.1721 11.1774 3.3091 24 1 1.8339 10.7870 5.2934 25 1 4.1213 9.9874 5.1969 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6765 1.9564 -0.8900 33 1 3.6868 1.8512 -2.0498 34 1 5.2234 1.7825 -1.1541 35 1 3.5956 -0.8022 -1.2857 36 1 6.6318 -0.0386 -1.4734 37 1 5.9471 -1.7489 -1.3861 38 1 4.6520 -1.3393 -3.5283 39 1 5.3372 0.3709 -3.6151 40 1 5.4711 3.5527 1.7127 41 1 2.9082 4.2578 1.0096 42 1 2.7408 3.5876 2.6500 43 1 5.4915 4.4711 3.6814 44 1 4.9861 6.0683 4.2821 45 1 3.9541 4.6449 4.5613 46 1 4.3562 6.2558 0.6181 47 1 5.2202 7.0093 1.9794 48 1 5.7264 5.4119 1.3787 49 1 2.1977 6.4996 1.8539 50 1 2.0310 5.8292 3.4944 51 1 0.3672 9.1078 3.7007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344966196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:03 Heat of formation + Delta-G solvation = -78.216743 kcal Electronic energy + Delta-G solvation = -28412.050731 eV Core-core repulsion = 24666.219700 eV Total energy + Delta-G solvation = -3745.831031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.41211 -37.74916 -37.15070 -36.04690 -35.69670 -33.54325 -32.85558 -31.89329 -27.73377 -27.04824 -26.48146 -25.83875 -25.18825 -22.75434 -22.52132 -21.80098 -20.76985 -19.47222 -18.39097 -17.97858 -17.10190 -16.53699 -16.31194 -15.48000 -15.14238 -14.85924 -14.69012 -14.52074 -14.36666 -14.06019 -13.60493 -13.36742 -13.18180 -12.85964 -12.67024 -12.43915 -12.27907 -12.10870 -12.09236 -11.96252 -11.83772 -11.75588 -11.70005 -11.51982 -11.24878 -11.21673 -11.01410 -10.90618 -10.85228 -10.63517 -10.43377 -10.39075 -10.25474 -10.11213 -9.91209 -9.30908 -9.26870 -9.13132 -8.90434 -8.37456 -6.02049 -4.02705 0.68161 2.90596 3.29809 3.37077 3.39411 3.56476 3.69576 4.36059 4.44236 4.53787 4.56193 4.73687 4.83640 4.89034 4.99282 5.05710 5.19572 5.30676 5.33895 5.41735 5.43407 5.48525 5.52944 5.55684 5.63474 5.71964 5.75711 5.77908 5.87017 5.90087 5.96399 6.09014 6.11018 6.12426 6.16663 6.24633 6.32153 6.39067 6.49513 6.65568 6.68142 7.04817 7.08145 7.13210 7.23193 7.60857 7.73997 7.96869 8.39702 9.01931 9.60554 11.09440 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.003029 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.613569 B = 9242.027197 C = 9833.658444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.123 3.877 4 N -1.003 6.003 5 C 0.159 3.841 6 C -0.179 4.179 7 C -0.170 4.170 8 C -0.179 4.179 9 S 2.782 3.218 10 O -0.976 6.976 11 O -0.981 6.981 12 N -1.122 6.122 13 C 0.127 3.873 14 C -0.066 4.066 15 C -0.128 4.128 16 C -0.126 4.126 17 C 0.035 3.965 18 C -0.510 4.510 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.888 3.112 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.274 1.274 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.414 0.586 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.065 0.935 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.066 0.934 48 H 0.030 0.970 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 -16.684 -12.240 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.185 4.185 3 C -0.003 4.003 4 N -0.840 5.840 5 C 0.033 3.967 6 C -0.199 4.199 7 C -0.207 4.207 8 C -0.217 4.217 9 S 2.790 3.210 10 O -0.959 6.959 11 O -0.965 6.965 12 N -0.885 5.885 13 C 0.001 3.999 14 C -0.067 4.067 15 C -0.185 4.185 16 C -0.184 4.184 17 C -0.003 4.003 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.249 0.751 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.049 0.951 49 H 0.036 0.964 50 H 0.037 0.963 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.413 -17.380 -11.654 21.386 hybrid contribution 0.395 1.395 0.128 1.456 sum 4.808 -15.984 -11.526 20.285 Atomic orbital electron populations 1.21707 0.95091 1.01851 1.02228 1.22074 0.96359 0.97390 1.02719 1.21397 0.78021 0.97246 1.03607 1.57944 1.15088 1.88333 1.22675 1.20785 0.96409 0.93900 0.85560 1.22977 0.97646 0.98048 1.01191 1.23025 0.94865 1.02277 1.00565 1.22949 1.04741 1.03320 0.90640 1.01998 0.72899 0.73144 0.72999 1.93611 1.67282 1.79786 1.55214 1.93598 1.40467 1.76595 1.85820 1.55924 1.16018 1.28578 1.88012 1.21531 0.86393 0.92010 0.99963 1.20813 0.98676 0.92628 0.94632 1.21750 0.98647 1.01135 0.96996 1.21747 0.97402 1.00452 0.98774 1.19121 0.91015 0.93122 0.97027 1.21195 0.93289 0.99096 1.41286 0.92251 1.25003 0.94916 0.98561 0.95983 1.69955 1.01047 1.33839 1.48653 0.86653 0.78447 0.84154 0.79085 1.20806 1.21346 1.19943 0.92628 0.92136 0.92598 0.91426 0.91290 0.89780 0.90252 0.89948 0.90085 0.87075 0.88203 0.89056 0.88928 0.88720 0.75079 0.92300 0.90906 0.94966 0.91586 0.93325 0.93431 0.91461 0.95127 0.96419 0.96293 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.15 0.37 -0.92 16 2 C -0.15 -1.41 5.82 -26.73 -0.16 -1.57 16 3 C 0.12 1.25 5.37 -4.04 -0.02 1.23 16 4 N -1.00 -11.04 2.87 -114.38 -0.33 -11.37 16 5 C 0.16 1.49 5.65 -4.04 -0.02 1.47 16 6 C -0.18 -1.64 5.82 -90.62 -0.53 -2.17 16 7 C -0.17 -1.60 10.18 -26.72 -0.27 -1.88 16 8 C -0.18 -1.36 10.25 -26.72 -0.27 -1.64 16 9 S 2.78 39.02 6.05 -107.50 -0.65 38.37 16 10 O -0.98 -16.64 16.58 -57.17 -0.95 -17.59 16 11 O -0.98 -15.30 17.11 -57.17 -0.98 -16.28 16 12 N -1.12 -15.50 5.39 -10.61 -0.06 -15.55 16 13 C 0.13 2.00 5.14 -4.04 -0.02 1.98 16 14 C -0.07 -1.22 0.55 -154.50 -0.08 -1.31 16 15 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 16 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 17 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 18 C -0.51 -13.34 7.65 -34.44 -0.26 -13.60 16 19 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 20 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -25.89 13.29 55.43 0.74 -25.15 16 22 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.58 5.96 -51.93 -0.31 0.27 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.94 7.61 -51.93 -0.40 0.55 16 32 H 0.08 0.66 8.00 -51.93 -0.42 0.25 16 33 H 0.08 0.63 8.00 -51.93 -0.42 0.21 16 34 H 0.08 0.76 7.34 -51.93 -0.38 0.38 16 35 H 0.11 1.03 5.64 -51.93 -0.29 0.74 16 36 H 0.10 1.00 8.03 -51.93 -0.42 0.58 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.41 5.31 6.47 -34.47 -0.22 5.09 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 43 H 0.03 0.50 7.19 -51.93 -0.37 0.13 16 44 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 48 H 0.03 0.43 6.60 -51.93 -0.34 0.09 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 407.60 15.07 6.14 6.14 Total: -1.00 -31.37 407.60 -11.15 -42.52 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -9.16 Total: 3.04 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -0.89 Total: -20.12 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.35 Total: -52.08 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.93 Total: -33.86 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 39.02 SS G_CDS: -0.65 Total: 38.37 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.37 -11.15 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344966196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.698 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds