Wall clock time and date at job start Tue Mar 31 2020 16:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46772 * 2 1 4 4 N 1.46498 * 109.46912 * 180.02562 * 3 2 1 5 5 C 1.46506 * 120.00239 * 85.00063 * 4 3 2 6 6 C 1.52997 * 109.46691 * 274.72301 * 5 4 3 7 7 C 1.53003 * 117.49562 * 243.62008 * 6 5 4 8 8 C 1.53008 * 117.49856 * 174.99761 * 6 5 4 9 9 S 1.65597 * 119.99910 * 264.71837 * 4 3 2 10 10 O 1.42101 * 106.40154 * 23.82013 * 9 4 3 11 11 O 1.42106 * 106.40098 * 156.73670 * 9 4 3 12 12 N 1.65596 * 107.22389 * 270.27980 * 9 4 3 13 13 C 1.46498 * 119.99862 * 64.99463 * 12 9 4 14 14 C 1.53001 * 109.46987 * 165.00307 * 13 12 9 15 15 C 1.52995 * 109.47314 * 300.00067 * 14 13 12 16 16 C 1.53005 * 109.47204 * 60.00521 * 14 13 12 17 17 C 1.53005 * 109.47262 * 180.02562 * 14 13 12 18 18 C 1.50697 * 109.47243 * 180.02562 * 17 14 13 19 19 H 1.07996 * 119.99912 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99743 * 180.02562 * 18 17 14 21 21 N 1.31515 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99768 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47094 * 89.99943 * 22 20 18 24 24 H 1.48499 * 109.46972 * 210.00110 * 22 20 18 25 25 H 1.48500 * 109.46697 * 329.99789 * 22 20 18 26 26 H 1.09003 * 109.46803 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47682 * 299.99782 * 1 2 3 28 28 H 1.09003 * 109.47413 * 60.00427 * 1 2 3 29 29 H 1.08999 * 109.47682 * 240.00218 * 2 1 3 30 30 H 1.09003 * 109.47413 * 119.99573 * 2 1 3 31 31 H 1.08990 * 109.47056 * 59.99695 * 3 2 1 32 32 H 1.09003 * 109.46803 * 299.99946 * 3 2 1 33 33 H 1.08999 * 109.47194 * 34.71912 * 5 4 3 34 34 H 1.08998 * 109.47440 * 154.72121 * 5 4 3 35 35 H 1.08997 * 115.55768 * 29.32740 * 6 5 4 36 36 H 1.08991 * 117.50093 * 359.97438 * 7 6 5 37 37 H 1.09003 * 117.50144 * 145.02693 * 7 6 5 38 38 H 1.08993 * 117.49898 * 214.97836 * 8 6 5 39 39 H 1.09000 * 117.49448 * 0.02562 * 8 6 5 40 40 H 0.97000 * 119.99918 * 245.00321 * 12 9 4 41 41 H 1.09005 * 109.47365 * 285.00417 * 13 12 9 42 42 H 1.09000 * 109.47259 * 45.00301 * 13 12 9 43 43 H 1.08999 * 109.46791 * 60.00003 * 15 14 13 44 44 H 1.09004 * 109.47027 * 179.97438 * 15 14 13 45 45 H 1.08997 * 109.47406 * 300.00013 * 15 14 13 46 46 H 1.09003 * 109.47063 * 59.99320 * 16 14 13 47 47 H 1.08991 * 109.47463 * 179.97438 * 16 14 13 48 48 H 1.08999 * 109.46878 * 299.99983 * 16 14 13 49 49 H 1.09003 * 109.46838 * 300.00578 * 17 14 13 50 50 H 1.09000 * 109.47236 * 59.99840 * 17 14 13 51 51 H 0.96999 * 119.99680 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2369 1.3323 -1.2649 6 6 4.3889 -0.1435 -1.6389 7 6 5.8071 -0.7144 -1.6995 8 6 5.0260 -0.4674 -2.9918 9 16 4.3334 1.5745 1.4271 10 8 3.4545 1.1155 2.4450 11 8 5.6186 1.0127 1.1985 12 7 4.5720 3.1888 1.7083 13 6 3.4250 4.0675 1.9503 14 6 3.9128 5.3918 2.5411 15 6 4.6381 5.1248 3.8615 16 6 4.8731 6.0656 1.5588 17 6 2.7149 6.3093 2.7944 18 6 3.1954 7.6140 3.3758 19 1 4.2497 7.7727 3.5478 20 6 2.2889 8.6045 3.6890 21 7 1.0049 8.4110 3.4800 22 14 2.8846 10.2220 4.4090 23 1 3.1721 11.1774 3.3091 24 1 1.8339 10.7870 5.2934 25 1 4.1213 9.9874 5.1969 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6765 1.9564 -0.8900 33 1 3.6868 1.8512 -2.0498 34 1 5.2234 1.7825 -1.1541 35 1 3.5956 -0.8022 -1.2857 36 1 6.6318 -0.0386 -1.4734 37 1 5.9471 -1.7489 -1.3861 38 1 4.6520 -1.3393 -3.5283 39 1 5.3372 0.3709 -3.6151 40 1 5.4711 3.5527 1.7127 41 1 2.9082 4.2578 1.0096 42 1 2.7408 3.5876 2.6500 43 1 5.4915 4.4711 3.6814 44 1 4.9861 6.0683 4.2821 45 1 3.9541 4.6449 4.5613 46 1 4.3562 6.2558 0.6181 47 1 5.2202 7.0093 1.9794 48 1 5.7264 5.4119 1.3787 49 1 2.1977 6.4996 1.8539 50 1 2.0310 5.8292 3.4944 51 1 0.3672 9.1078 3.7007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344966196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:02 Heat of formation + Delta-G solvation = -97.379528 kcal Electronic energy + Delta-G solvation = -28412.881692 eV Core-core repulsion = 24666.219700 eV Total energy + Delta-G solvation = -3746.661992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.21077 -39.15088 -38.36033 -36.93775 -36.80684 -35.21108 -33.68547 -33.57383 -28.95385 -28.47718 -27.92654 -27.24290 -25.99129 -24.62921 -23.15665 -22.58801 -21.48583 -20.56514 -19.86607 -18.98555 -18.34848 -18.30680 -17.45475 -16.59111 -16.45270 -15.97294 -15.77421 -15.57835 -15.39580 -15.30884 -14.91601 -14.45471 -14.32446 -14.04769 -13.91585 -13.88334 -13.59002 -13.26118 -13.22996 -13.17452 -12.90591 -12.89890 -12.68031 -12.65684 -12.60615 -12.45004 -12.28812 -12.26925 -12.16785 -11.96584 -11.94786 -11.62558 -11.51805 -11.11917 -10.94425 -10.83382 -10.78702 -10.47713 -10.41336 -10.07489 -8.11696 -6.17713 -0.43129 1.42661 1.43917 1.53336 1.87625 2.45630 2.52351 2.96116 3.23103 3.31557 3.73442 3.83227 3.94144 4.02194 4.10432 4.14461 4.20069 4.23991 4.28090 4.34232 4.44760 4.53489 4.70871 4.76002 4.76731 4.78777 4.80492 4.87446 4.90144 4.96315 5.00652 5.06082 5.10021 5.15931 5.17954 5.22438 5.32175 5.33871 5.40588 5.44352 5.50337 5.52731 5.57361 5.61188 5.65439 5.85766 5.94146 6.11917 6.36723 6.96918 7.49343 9.00346 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.003029 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.613569 B = 9242.027197 C = 9833.658444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.116 3.884 4 N -0.995 5.995 5 C 0.153 3.847 6 C -0.189 4.189 7 C -0.190 4.190 8 C -0.156 4.156 9 S 2.795 3.205 10 O -1.010 7.010 11 O -0.995 6.995 12 N -1.116 6.116 13 C 0.137 3.863 14 C -0.063 4.063 15 C -0.126 4.126 16 C -0.122 4.122 17 C 0.040 3.960 18 C -0.514 4.514 19 H 0.066 0.934 20 C -0.001 4.001 21 N -0.934 5.934 22 Si 0.952 3.048 23 H -0.275 1.275 24 H -0.290 1.290 25 H -0.265 1.265 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.420 0.580 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.035 0.965 46 H 0.049 0.951 47 H 0.049 0.951 48 H 0.064 0.936 49 H -0.002 1.002 50 H -0.012 1.012 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 -16.814 -14.093 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.009 4.009 4 N -0.834 5.834 5 C 0.028 3.972 6 C -0.209 4.209 7 C -0.228 4.228 8 C -0.194 4.194 9 S 2.804 3.196 10 O -0.993 6.993 11 O -0.979 6.979 12 N -0.879 5.879 13 C 0.010 3.990 14 C -0.065 4.065 15 C -0.184 4.184 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.552 4.552 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.778 3.222 23 H -0.201 1.201 24 H -0.216 1.216 25 H -0.190 1.190 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.257 0.743 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.016 0.984 50 H 0.006 0.994 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.565 -17.512 -13.503 22.803 hybrid contribution 0.044 1.368 0.670 1.524 sum 5.609 -16.145 -12.833 21.373 Atomic orbital electron populations 1.21707 0.94239 1.02434 1.02392 1.22055 0.97098 0.96915 1.02288 1.21567 0.77337 0.97792 1.04161 1.57693 1.15408 1.88025 1.22323 1.21032 0.96652 0.94423 0.85087 1.22997 0.97274 0.97851 1.02749 1.23062 0.94908 1.02060 1.02729 1.23025 1.02577 1.03980 0.89820 1.01405 0.72283 0.72835 0.73126 1.93568 1.68027 1.80386 1.57324 1.93576 1.41402 1.76803 1.86155 1.55749 1.15752 1.28133 1.88268 1.21279 0.86752 0.90694 1.00250 1.20672 0.97013 0.93111 0.95690 1.21723 0.99318 1.00877 0.96466 1.21683 0.98060 1.00142 0.98024 1.18987 0.92417 0.93388 0.94960 1.21607 0.93591 0.99840 1.40209 0.91552 1.25840 0.95063 1.02156 0.96732 1.70087 1.02237 1.34966 1.50289 0.85642 0.78020 0.80127 0.78424 1.20052 1.21563 1.18983 0.91890 0.93275 0.91115 0.89977 0.93581 0.91235 0.87651 0.87426 0.90055 0.87329 0.89113 0.89295 0.87742 0.87441 0.74307 0.90736 0.92229 0.92096 0.92972 0.94591 0.93180 0.93182 0.91719 0.98362 0.99374 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.66 16 2 C -0.14 -2.63 5.82 30.60 0.18 -2.46 16 3 C 0.12 2.21 5.37 86.38 0.46 2.68 16 4 N -0.99 -20.37 2.87 -515.78 -1.48 -21.85 16 5 C 0.15 2.49 5.65 86.38 0.49 2.97 16 6 C -0.19 -3.08 5.82 -10.79 -0.06 -3.15 16 7 C -0.19 -3.34 10.18 30.60 0.31 -3.02 16 8 C -0.16 -1.96 10.25 30.60 0.31 -1.64 16 9 S 2.80 76.19 6.05 -56.49 -0.34 75.85 16 10 O -1.01 -34.71 16.58 -128.00 -2.12 -36.83 16 11 O -1.00 -30.08 17.11 -128.00 -2.19 -32.27 16 12 N -1.12 -29.15 5.39 -187.49 -1.01 -30.16 16 13 C 0.14 4.22 5.14 86.38 0.44 4.67 16 14 C -0.06 -2.31 0.55 -52.18 -0.03 -2.34 16 15 C -0.13 -4.54 8.05 71.98 0.58 -3.96 16 16 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 17 C 0.04 1.95 4.04 29.85 0.12 2.07 16 18 C -0.51 -27.09 7.65 25.60 0.20 -26.89 16 19 H 0.07 3.34 5.68 -2.91 -0.02 3.33 16 20 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 21 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 22 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.25 5.96 -2.39 -0.01 1.23 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.54 7.61 -2.39 -0.02 1.52 16 32 H 0.11 1.47 8.00 -2.39 -0.02 1.45 16 33 H 0.11 1.24 8.00 -2.39 -0.02 1.22 16 34 H 0.08 1.34 7.34 -2.39 -0.02 1.32 16 35 H 0.11 1.82 5.64 -2.39 -0.01 1.81 16 36 H 0.09 1.73 8.03 -2.39 -0.02 1.71 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.42 9.78 6.47 -96.75 -0.63 9.16 16 41 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.06 2.02 7.75 -2.39 -0.02 2.00 16 43 H 0.06 1.81 7.19 -2.39 -0.02 1.79 16 44 H 0.05 1.99 6.62 -2.38 -0.02 1.98 16 45 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.05 1.78 6.62 -2.39 -0.02 1.76 16 48 H 0.06 1.63 6.60 -2.39 -0.02 1.61 16 49 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 50 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 51 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -68.31 407.60 0.20 -68.11 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.27 Total: 22.46 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 4.76 Total: -35.67 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -2.20 Total: -106.89 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: -4.31 Total: -69.11 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 76.19 SS G_CDS: -0.34 Total: 75.85 kcal Total: -68.31 0.20 -68.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344966196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.269 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds