Wall clock time and date at job start Tue Mar 31 2020 16:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47151 * 2 1 4 4 N 1.46894 * 109.47197 * 119.99801 * 2 1 3 5 5 C 1.46892 * 111.00383 * 280.66513 * 4 2 1 6 6 C 1.53001 * 109.47438 * 169.99868 * 5 4 2 7 7 N 1.46498 * 109.47373 * 180.02562 * 6 5 4 8 8 S 1.65598 * 120.00367 * 165.27506 * 7 6 5 9 9 O 1.42096 * 104.28036 * 180.79968 * 8 7 6 10 10 O 1.42101 * 104.27726 * 308.65717 * 8 7 6 11 11 C 1.81404 * 104.44733 * 64.72408 * 8 7 6 12 12 C 1.53000 * 109.46989 * 170.75567 * 11 8 7 13 13 C 1.50699 * 115.55169 * 54.41932 * 12 11 8 14 14 H 1.08001 * 120.00284 * 264.72331 * 13 12 11 15 15 C 1.37879 * 119.99782 * 84.71414 * 13 12 11 16 16 N 1.31512 * 120.00303 * 0.20386 * 15 13 12 17 17 Si 1.86807 * 119.99785 * 180.19648 * 15 13 12 18 18 H 1.48504 * 109.47014 * 60.00649 * 17 15 13 19 19 H 1.48504 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47236 * 300.00337 * 17 15 13 21 21 C 1.53001 * 117.49947 * 268.75098 * 12 11 8 22 22 C 1.53001 * 117.49969 * 200.08967 * 12 11 8 23 23 C 1.46906 * 110.99859 * 156.70962 * 4 2 1 24 24 C 1.53000 * 109.47274 * 292.79973 * 23 4 2 25 25 C 1.53001 * 109.47031 * 52.80304 * 23 4 2 26 26 H 1.08995 * 109.46909 * 305.32326 * 1 2 3 27 27 H 1.09002 * 109.47084 * 65.32348 * 1 2 3 28 28 H 1.08999 * 109.46882 * 185.32386 * 1 2 3 29 29 H 1.09004 * 109.47210 * 239.99889 * 2 1 3 30 30 H 1.08996 * 109.47223 * 180.88126 * 3 2 1 31 31 H 1.09006 * 109.46982 * 300.87611 * 3 2 1 32 32 H 1.08997 * 109.47224 * 60.87956 * 3 2 1 33 33 H 1.09001 * 109.46924 * 50.00010 * 5 4 2 34 34 H 1.08996 * 109.47728 * 290.00080 * 5 4 2 35 35 H 1.09001 * 109.46947 * 60.00157 * 6 5 4 36 36 H 1.09005 * 109.47220 * 300.00053 * 6 5 4 37 37 H 0.97005 * 119.99802 * 345.00450 * 7 6 5 38 38 H 1.08997 * 109.47242 * 290.75363 * 11 8 7 39 39 H 1.08995 * 109.47002 * 50.75625 * 11 8 7 40 40 H 0.97000 * 120.00326 * 185.02860 * 16 15 13 41 41 H 1.08994 * 117.49727 * 0.02562 * 21 12 11 42 42 H 1.08997 * 117.49744 * 145.01956 * 21 12 11 43 43 H 1.08996 * 117.50012 * 214.97829 * 22 12 11 44 44 H 1.09002 * 117.49559 * 359.97438 * 22 12 11 45 45 H 1.08998 * 109.46933 * 172.79802 * 23 4 2 46 46 H 1.08996 * 109.47341 * 67.43197 * 24 23 4 47 47 H 1.09003 * 109.46757 * 187.43026 * 24 23 4 48 48 H 1.08995 * 109.47077 * 307.42722 * 24 23 4 49 49 H 1.09000 * 109.47112 * 53.84092 * 25 23 4 50 50 H 1.08994 * 109.47155 * 173.84902 * 25 23 4 51 51 H 1.09001 * 109.46502 * 293.84253 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.9559 0.1842 2.3763 6 6 2.2326 -0.6353 3.6384 7 7 2.1684 0.2388 4.8122 8 16 2.0633 -0.4177 6.3289 9 8 2.0027 0.7076 7.1944 10 8 0.9800 -1.3330 6.2403 11 6 3.6303 -1.3052 6.5473 12 6 3.7565 -1.7670 8.0005 13 6 2.6060 -2.5876 8.5240 14 1 1.8074 -2.1100 9.0721 15 6 2.5730 -3.9482 8.3031 16 7 3.5474 -4.5304 7.6390 17 14 1.1442 -4.9646 8.9473 18 1 -0.1227 -4.4731 8.3482 19 1 1.3454 -6.3896 8.5807 20 1 1.0742 -4.8393 10.4253 21 6 4.4575 -0.8261 8.9824 22 6 5.1571 -2.1049 8.5153 23 6 3.3828 -1.2002 0.9944 24 6 3.3599 -2.3139 -0.0544 25 6 4.2836 -0.0622 0.5104 26 1 -0.3633 0.5942 0.8384 27 1 -0.3633 0.4291 -0.9338 28 1 -0.3633 -1.0232 0.0954 29 1 1.8934 -0.5139 -0.8900 30 1 3.1299 1.4426 -0.0158 31 1 1.6639 1.9609 -0.8821 32 1 1.6896 1.9518 0.8977 33 1 0.9638 0.6308 2.4434 34 1 2.7034 0.9720 2.2836 35 1 3.2246 -1.0819 3.5713 36 1 1.4849 -1.4231 3.7312 37 1 2.1913 1.2023 4.7013 38 1 3.6517 -2.1724 5.8874 39 1 4.4604 -0.6423 6.3033 40 1 3.4894 -5.4736 7.4201 41 1 4.8283 0.1221 8.5933 42 1 4.0867 -0.8009 10.0071 43 1 5.2464 -2.9205 9.2328 44 1 5.9886 -1.9986 7.8185 45 1 3.7689 -1.5944 1.9345 46 1 3.1005 -1.8930 -1.0258 47 1 4.3438 -2.7797 -0.1113 48 1 2.6193 -3.0625 0.2267 49 1 4.2145 0.7759 1.2039 50 1 5.3153 -0.4105 0.4629 51 1 3.9626 0.2588 -0.4806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346477746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:19 Heat of formation + Delta-G solvation = -38.467547 kcal Electronic energy + Delta-G solvation = -28504.186401 eV Core-core repulsion = 24760.079024 eV Total energy + Delta-G solvation = -3744.107377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.87072 -36.71406 -36.18796 -35.29275 -34.91014 -33.52176 -32.01315 -30.86446 -28.60865 -28.16770 -26.92860 -26.40695 -25.42838 -22.82704 -21.78648 -21.16463 -19.74783 -19.04326 -18.47489 -17.01266 -16.57822 -16.27089 -16.20824 -15.46251 -15.05097 -14.89163 -14.65745 -14.34048 -14.10184 -13.75125 -13.73190 -13.53700 -13.24130 -13.07271 -12.53284 -12.46069 -12.26995 -12.07231 -11.96976 -11.80853 -11.78040 -11.64364 -11.42835 -11.18774 -11.07666 -11.06537 -11.00624 -10.97808 -10.84523 -10.60446 -10.51887 -10.42668 -10.39586 -10.07841 -9.64558 -9.13945 -8.98988 -8.50088 -8.43377 -8.05955 -6.11876 -4.25468 1.13899 3.36612 3.38415 3.40172 3.48100 3.84732 4.42057 4.59674 4.60063 4.66200 4.81131 4.88361 4.97727 5.06368 5.09994 5.13557 5.17100 5.17633 5.28721 5.32901 5.38874 5.42596 5.49503 5.50782 5.58885 5.66685 5.69524 5.76538 5.78906 5.85229 5.96894 5.99513 6.02026 6.03843 6.09990 6.17927 6.23943 6.31277 6.38516 6.64094 6.73965 6.96321 7.00514 7.01155 7.22698 7.31647 7.45289 7.81095 8.21376 8.81313 9.48891 10.95598 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.003475 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.896521 B = 8054.571107 C = 8348.986484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 C -0.212 4.212 4 N -0.523 5.523 5 C 0.047 3.953 6 C 0.117 3.883 7 N -1.135 6.135 8 S 2.616 3.384 9 O -0.974 6.974 10 O -0.947 6.947 11 C -0.557 4.557 12 C 0.044 3.956 13 C -0.526 4.526 14 H 0.067 0.933 15 C 0.088 3.912 16 N -0.873 5.873 17 Si 0.888 3.112 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.206 4.206 22 C -0.138 4.138 23 C 0.066 3.934 24 C -0.143 4.143 25 C -0.192 4.192 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.407 0.593 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.264 0.736 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 8.906 -17.734 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.270 4.270 4 N -0.247 5.247 5 C -0.082 4.082 6 C -0.009 4.009 7 N -0.892 5.892 8 S 2.713 3.287 9 O -0.965 6.965 10 O -0.936 6.936 11 C -0.690 4.690 12 C 0.042 3.958 13 C -0.563 4.563 14 H 0.085 0.915 15 C -0.118 4.118 16 N -0.508 5.508 17 Si 0.715 3.285 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.243 4.243 22 C -0.177 4.177 23 C -0.042 4.042 24 C -0.200 4.200 25 C -0.250 4.250 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.239 0.761 38 H 0.147 0.853 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.384 8.184 -17.091 18.954 hybrid contribution 0.601 0.333 -0.296 0.748 sum 0.985 8.517 -17.387 19.386 Atomic orbital electron populations 1.21811 0.94372 1.02648 1.01165 1.21692 0.95821 0.92568 0.93192 1.23163 1.03538 0.97904 1.02368 1.62310 1.22126 1.37269 1.03008 1.22312 1.02010 0.94522 0.89378 1.21223 1.01995 0.93315 0.84407 1.56013 1.93030 1.16510 1.23645 1.04877 0.78015 0.74394 0.71461 1.93495 1.87770 1.51189 1.64019 1.93535 1.50029 1.65586 1.84479 1.29975 1.18713 1.11919 1.08347 1.18221 0.94548 0.97653 0.85365 1.20523 1.05758 0.92195 1.37802 0.91486 1.24922 0.95388 0.97500 0.93982 1.69975 1.30799 1.11885 1.38141 0.86682 0.83494 0.78793 0.79548 1.19074 1.21051 1.19926 1.23143 1.07340 0.93318 1.00502 1.22516 0.95385 0.96926 1.02874 1.21860 0.87425 0.94795 1.00127 1.21848 1.02102 0.98264 0.97824 1.22854 1.00696 0.99774 1.01653 0.92730 0.92709 0.91673 0.89938 0.90156 0.92605 0.92114 0.89930 0.93627 0.92126 0.89269 0.76131 0.85303 0.88399 0.92645 0.91129 0.89639 0.89422 0.91722 0.89182 0.92967 0.92240 0.91412 0.92095 0.92293 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.28 37.16 0.34 -0.88 16 2 C 0.08 0.65 2.31 -67.72 -0.16 0.49 16 3 C -0.21 -1.63 7.66 37.16 0.28 -1.34 16 4 N -0.52 -5.32 4.35 -218.73 -0.95 -6.27 16 5 C 0.05 0.51 3.61 -3.83 -0.01 0.49 16 6 C 0.12 1.59 6.07 -4.04 -0.02 1.57 16 7 N -1.14 -16.89 5.89 -10.61 -0.06 -16.95 16 8 S 2.62 53.78 4.92 -107.50 -0.53 53.25 16 9 O -0.97 -21.99 18.08 -57.54 -1.04 -23.03 16 10 O -0.95 -23.11 17.03 -57.54 -0.98 -24.09 16 11 C -0.56 -11.62 6.00 37.16 0.22 -11.40 16 12 C 0.04 1.09 1.51 -155.66 -0.23 0.85 16 13 C -0.53 -14.52 7.70 -34.44 -0.27 -14.78 16 14 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 15 C 0.09 2.42 5.42 -17.82 -0.10 2.32 16 16 N -0.87 -24.13 12.76 55.43 0.71 -23.43 16 17 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.21 -4.54 9.92 -26.69 -0.26 -4.81 16 22 C -0.14 -3.17 9.31 -26.69 -0.25 -3.42 16 23 C 0.07 0.62 2.79 -67.71 -0.19 0.44 16 24 C -0.14 -1.22 9.04 37.16 0.34 -0.89 16 25 C -0.19 -1.53 7.27 37.16 0.27 -1.26 16 26 H 0.05 0.50 7.14 -51.93 -0.37 0.13 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.67 5.84 -51.93 -0.30 0.37 16 30 H 0.08 0.59 3.74 -51.93 -0.19 0.40 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.50 6.39 -51.93 -0.33 0.16 16 33 H 0.08 0.90 6.74 -51.93 -0.35 0.55 16 34 H 0.05 0.44 5.25 -51.93 -0.27 0.17 16 35 H 0.06 0.76 6.35 -51.93 -0.33 0.43 16 36 H 0.09 1.38 7.71 -51.93 -0.40 0.98 16 37 H 0.41 5.01 8.62 -34.47 -0.30 4.72 16 38 H 0.13 2.75 8.14 -51.93 -0.42 2.33 16 39 H 0.10 1.70 8.09 -51.93 -0.42 1.28 16 40 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.09 0.94 6.05 -51.93 -0.31 0.63 16 46 H 0.05 0.40 6.55 -51.93 -0.34 0.06 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.06 0.50 5.62 -51.93 -0.29 0.21 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 51 H 0.07 0.49 5.66 -51.93 -0.29 0.19 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -32.35 397.22 -10.63 -42.98 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -8.71 Total: 7.42 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: -0.03 Total: -32.62 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.31 Total: -46.65 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -2.02 Total: -47.12 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 53.78 SS G_CDS: -0.53 Total: 53.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.35 -10.63 -42.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346477746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.515 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds