Wall clock time and date at job start Tue Mar 31 2020 16:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47151 * 2 1 4 4 N 1.46894 * 109.47197 * 119.99801 * 2 1 3 5 5 C 1.46892 * 111.00383 * 280.66513 * 4 2 1 6 6 C 1.53001 * 109.47438 * 169.99868 * 5 4 2 7 7 N 1.46498 * 109.47373 * 180.02562 * 6 5 4 8 8 S 1.65598 * 120.00367 * 165.27506 * 7 6 5 9 9 O 1.42096 * 104.28036 * 180.79968 * 8 7 6 10 10 O 1.42101 * 104.27726 * 308.65717 * 8 7 6 11 11 C 1.81404 * 104.44733 * 64.72408 * 8 7 6 12 12 C 1.53000 * 109.46989 * 170.75567 * 11 8 7 13 13 C 1.50699 * 115.55169 * 54.41932 * 12 11 8 14 14 H 1.08001 * 120.00284 * 264.72331 * 13 12 11 15 15 C 1.37879 * 119.99782 * 84.71414 * 13 12 11 16 16 N 1.31512 * 120.00303 * 0.20386 * 15 13 12 17 17 Si 1.86807 * 119.99785 * 180.19648 * 15 13 12 18 18 H 1.48504 * 109.47014 * 60.00649 * 17 15 13 19 19 H 1.48504 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47236 * 300.00337 * 17 15 13 21 21 C 1.53001 * 117.49947 * 268.75098 * 12 11 8 22 22 C 1.53001 * 117.49969 * 200.08967 * 12 11 8 23 23 C 1.46906 * 110.99859 * 156.70962 * 4 2 1 24 24 C 1.53000 * 109.47274 * 292.79973 * 23 4 2 25 25 C 1.53001 * 109.47031 * 52.80304 * 23 4 2 26 26 H 1.08995 * 109.46909 * 305.32326 * 1 2 3 27 27 H 1.09002 * 109.47084 * 65.32348 * 1 2 3 28 28 H 1.08999 * 109.46882 * 185.32386 * 1 2 3 29 29 H 1.09004 * 109.47210 * 239.99889 * 2 1 3 30 30 H 1.08996 * 109.47223 * 180.88126 * 3 2 1 31 31 H 1.09006 * 109.46982 * 300.87611 * 3 2 1 32 32 H 1.08997 * 109.47224 * 60.87956 * 3 2 1 33 33 H 1.09001 * 109.46924 * 50.00010 * 5 4 2 34 34 H 1.08996 * 109.47728 * 290.00080 * 5 4 2 35 35 H 1.09001 * 109.46947 * 60.00157 * 6 5 4 36 36 H 1.09005 * 109.47220 * 300.00053 * 6 5 4 37 37 H 0.97005 * 119.99802 * 345.00450 * 7 6 5 38 38 H 1.08997 * 109.47242 * 290.75363 * 11 8 7 39 39 H 1.08995 * 109.47002 * 50.75625 * 11 8 7 40 40 H 0.97000 * 120.00326 * 185.02860 * 16 15 13 41 41 H 1.08994 * 117.49727 * 0.02562 * 21 12 11 42 42 H 1.08997 * 117.49744 * 145.01956 * 21 12 11 43 43 H 1.08996 * 117.50012 * 214.97829 * 22 12 11 44 44 H 1.09002 * 117.49559 * 359.97438 * 22 12 11 45 45 H 1.08998 * 109.46933 * 172.79802 * 23 4 2 46 46 H 1.08996 * 109.47341 * 67.43197 * 24 23 4 47 47 H 1.09003 * 109.46757 * 187.43026 * 24 23 4 48 48 H 1.08995 * 109.47077 * 307.42722 * 24 23 4 49 49 H 1.09000 * 109.47112 * 53.84092 * 25 23 4 50 50 H 1.08994 * 109.47155 * 173.84902 * 25 23 4 51 51 H 1.09001 * 109.46502 * 293.84253 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.9559 0.1842 2.3763 6 6 2.2326 -0.6353 3.6384 7 7 2.1684 0.2388 4.8122 8 16 2.0633 -0.4177 6.3289 9 8 2.0027 0.7076 7.1944 10 8 0.9800 -1.3330 6.2403 11 6 3.6303 -1.3052 6.5473 12 6 3.7565 -1.7670 8.0005 13 6 2.6060 -2.5876 8.5240 14 1 1.8074 -2.1100 9.0721 15 6 2.5730 -3.9482 8.3031 16 7 3.5474 -4.5304 7.6390 17 14 1.1442 -4.9646 8.9473 18 1 -0.1227 -4.4731 8.3482 19 1 1.3454 -6.3896 8.5807 20 1 1.0742 -4.8393 10.4253 21 6 4.4575 -0.8261 8.9824 22 6 5.1571 -2.1049 8.5153 23 6 3.3828 -1.2002 0.9944 24 6 3.3599 -2.3139 -0.0544 25 6 4.2836 -0.0622 0.5104 26 1 -0.3633 0.5942 0.8384 27 1 -0.3633 0.4291 -0.9338 28 1 -0.3633 -1.0232 0.0954 29 1 1.8934 -0.5139 -0.8900 30 1 3.1299 1.4426 -0.0158 31 1 1.6639 1.9609 -0.8821 32 1 1.6896 1.9518 0.8977 33 1 0.9638 0.6308 2.4434 34 1 2.7034 0.9720 2.2836 35 1 3.2246 -1.0819 3.5713 36 1 1.4849 -1.4231 3.7312 37 1 2.1913 1.2023 4.7013 38 1 3.6517 -2.1724 5.8874 39 1 4.4604 -0.6423 6.3033 40 1 3.4894 -5.4736 7.4201 41 1 4.8283 0.1221 8.5933 42 1 4.0867 -0.8009 10.0071 43 1 5.2464 -2.9205 9.2328 44 1 5.9886 -1.9986 7.8185 45 1 3.7689 -1.5944 1.9345 46 1 3.1005 -1.8930 -1.0258 47 1 4.3438 -2.7797 -0.1113 48 1 2.6193 -3.0625 0.2267 49 1 4.2145 0.7759 1.2039 50 1 5.3153 -0.4105 0.4629 51 1 3.9626 0.2588 -0.4806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346477746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:18 Heat of formation + Delta-G solvation = -61.313631 kcal Electronic energy + Delta-G solvation = -28505.177081 eV Core-core repulsion = 24760.079024 eV Total energy + Delta-G solvation = -3745.098057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.61724 -38.54073 -37.92406 -36.79426 -36.35183 -34.19164 -34.08097 -31.75275 -29.87385 -29.25285 -27.87530 -27.46973 -27.04696 -23.79651 -22.94864 -22.48055 -21.52326 -20.34237 -19.63624 -18.44945 -18.27569 -17.47780 -17.15318 -16.88213 -16.67916 -16.30578 -16.13016 -15.65316 -15.15513 -15.04856 -14.89685 -14.53252 -14.34785 -13.96031 -13.81142 -13.72170 -13.48473 -13.20056 -13.08345 -12.98510 -12.91664 -12.87823 -12.84355 -12.69585 -12.62888 -12.46921 -12.42302 -12.20672 -12.16249 -12.11297 -11.88025 -11.76219 -11.50003 -11.30945 -11.10346 -10.95845 -10.49784 -10.39939 -9.85523 -9.16720 -8.20602 -6.37312 -0.48759 1.37430 1.41032 1.48734 2.04407 2.40193 2.94188 3.02109 3.08347 3.38204 3.52418 3.82610 3.93783 3.97575 4.04189 4.14821 4.22918 4.31030 4.37919 4.40295 4.47445 4.53564 4.57440 4.58650 4.61951 4.76675 4.79371 4.81164 4.85779 4.87449 4.96281 4.98367 5.00035 5.04824 5.08181 5.16474 5.21435 5.23198 5.33582 5.41809 5.43616 5.44280 5.48936 5.63476 5.69708 6.14707 6.21589 6.24703 6.29695 6.70275 7.37727 8.86158 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.003475 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.896521 B = 8054.571107 C = 8348.986484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 C -0.208 4.208 4 N -0.537 5.537 5 C 0.054 3.946 6 C 0.112 3.888 7 N -1.114 6.114 8 S 2.629 3.371 9 O -0.997 6.997 10 O -0.994 6.994 11 C -0.552 4.552 12 C 0.009 3.991 13 C -0.543 4.543 14 H 0.047 0.953 15 C 0.050 3.950 16 N -0.888 5.888 17 Si 0.927 3.073 18 H -0.279 1.279 19 H -0.271 1.271 20 H -0.266 1.266 21 C -0.193 4.193 22 C -0.134 4.134 23 C 0.062 3.938 24 C -0.140 4.140 25 C -0.186 4.186 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.422 0.578 38 H 0.121 0.879 39 H 0.137 0.863 40 H 0.266 0.734 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.051 0.949 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 10.204 -19.441 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.266 4.266 4 N -0.262 5.262 5 C -0.075 4.075 6 C -0.014 4.014 7 N -0.876 5.876 8 S 2.726 3.274 9 O -0.987 6.987 10 O -0.983 6.983 11 C -0.685 4.685 12 C 0.007 3.993 13 C -0.581 4.581 14 H 0.065 0.935 15 C -0.154 4.154 16 N -0.524 5.524 17 Si 0.752 3.248 18 H -0.204 1.204 19 H -0.195 1.195 20 H -0.191 1.191 21 C -0.230 4.230 22 C -0.173 4.173 23 C -0.046 4.046 24 C -0.197 4.197 25 C -0.244 4.244 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.258 0.742 38 H 0.140 0.860 39 H 0.156 0.844 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.593 9.492 -18.788 21.110 hybrid contribution 0.220 -0.050 0.198 0.300 sum 1.813 9.442 -18.590 20.929 Atomic orbital electron populations 1.21813 0.94665 1.01790 1.01669 1.21737 0.95573 0.93259 0.92633 1.23120 1.03863 0.96999 1.02620 1.62273 1.22870 1.37663 1.03381 1.22202 1.02485 0.94428 0.88367 1.21372 1.02032 0.93074 0.84923 1.55403 1.92582 1.17453 1.22149 1.04146 0.77471 0.73549 0.72200 1.93452 1.88018 1.51578 1.65688 1.93479 1.52240 1.67046 1.85566 1.29844 1.20230 1.12433 1.05952 1.18365 0.94226 0.99128 0.87548 1.20716 1.06502 0.92982 1.37884 0.93505 1.25448 0.97159 0.98325 0.94440 1.70008 1.31525 1.12091 1.38770 0.86089 0.80849 0.78421 0.79468 1.20450 1.19549 1.19103 1.23214 1.05822 0.94127 0.99838 1.22453 0.95359 0.96773 1.02746 1.21894 0.87336 0.95591 0.99823 1.21821 1.02080 0.97738 0.98097 1.22796 1.00568 0.98990 1.02047 0.93518 0.91146 0.92977 0.89186 0.89581 0.91621 0.92608 0.90120 0.91778 0.90807 0.91794 0.74215 0.86044 0.84439 0.92481 0.88125 0.90240 0.91687 0.89419 0.90526 0.91843 0.91507 0.92935 0.92138 0.91796 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.28 71.98 0.67 -1.61 16 2 C 0.08 1.16 2.31 44.92 0.10 1.26 16 3 C -0.21 -2.64 7.66 71.98 0.55 -2.09 16 4 N -0.54 -10.23 4.35 -845.92 -3.68 -13.91 16 5 C 0.05 1.09 3.61 86.30 0.31 1.40 16 6 C 0.11 2.95 6.07 86.38 0.52 3.48 16 7 N -1.11 -31.76 5.89 -187.49 -1.10 -32.86 16 8 S 2.63 107.25 4.92 -56.49 -0.28 106.97 16 9 O -1.00 -44.34 18.08 -127.65 -2.31 -46.65 16 10 O -0.99 -49.69 17.03 -127.65 -2.17 -51.87 16 11 C -0.55 -22.33 6.00 71.98 0.43 -21.90 16 12 C 0.01 0.45 1.51 -52.93 -0.08 0.37 16 13 C -0.54 -30.46 7.70 25.60 0.20 -30.26 16 14 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 15 C 0.05 2.78 5.42 84.66 0.46 3.24 16 16 N -0.89 -49.30 12.76 21.45 0.27 -49.03 16 17 Si 0.93 45.01 29.54 68.60 2.03 47.03 16 18 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 C -0.19 -8.21 9.92 30.62 0.30 -7.91 16 22 C -0.13 -6.00 9.31 30.62 0.28 -5.72 16 23 C 0.06 1.06 2.79 44.91 0.13 1.19 16 24 C -0.14 -2.20 9.04 71.98 0.65 -1.55 16 25 C -0.19 -2.48 7.27 71.98 0.52 -1.95 16 26 H 0.05 0.81 7.14 -2.39 -0.02 0.79 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.25 5.84 -2.39 -0.01 1.23 16 30 H 0.09 1.00 3.74 -2.39 -0.01 0.99 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.05 0.77 6.39 -2.39 -0.02 0.76 16 33 H 0.08 1.65 6.74 -2.39 -0.02 1.64 16 34 H 0.06 1.06 5.25 -2.39 -0.01 1.05 16 35 H 0.07 1.76 6.35 -2.39 -0.02 1.74 16 36 H 0.06 2.02 7.71 -2.38 -0.02 2.01 16 37 H 0.42 9.55 8.62 -96.74 -0.83 8.72 16 38 H 0.12 5.11 8.14 -2.39 -0.02 5.09 16 39 H 0.14 4.35 8.09 -2.39 -0.02 4.33 16 40 H 0.27 14.08 8.32 -92.71 -0.77 13.31 16 41 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 42 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 45 H 0.08 1.51 6.05 -2.39 -0.01 1.50 16 46 H 0.06 0.84 6.55 -2.39 -0.02 0.82 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 0.82 5.62 -2.39 -0.01 0.80 16 50 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.08 0.88 5.66 -2.39 -0.01 0.86 16 Total: -1.00 -69.90 397.22 -2.10 -72.00 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.09 Total: 30.35 kcal Atomic # 6 Polarization: -67.10 SS G_CDS: 5.06 Total: -62.05 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -4.51 Total: -95.80 kcal Atomic # 8 Polarization: -94.03 SS G_CDS: -4.48 Total: -98.51 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 107.25 SS G_CDS: -0.28 Total: 106.97 kcal Total: -69.90 -2.10 -72.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346477746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.689 kcal (2) G-P(sol) polarization free energy of solvation -69.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds