Wall clock time and date at job start Tue Mar 31 2020 16:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47273 * 2 1 4 4 N 1.46503 * 109.47088 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99685 * 273.00292 * 4 3 2 6 6 H 1.08003 * 119.99982 * 9.15264 * 5 4 3 7 7 C 1.38805 * 120.00208 * 189.15368 * 5 4 3 8 8 N 1.31622 * 119.99880 * 26.29633 * 7 5 4 9 9 Si 1.86797 * 120.00275 * 206.29638 * 7 5 4 10 10 H 1.48502 * 109.47260 * 59.99625 * 9 7 5 11 11 H 1.48495 * 109.47334 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47110 * 300.00058 * 9 7 5 13 13 C 1.46500 * 120.00313 * 93.00468 * 4 3 2 14 14 C 1.50697 * 109.46968 * 89.99746 * 13 4 3 15 15 O 1.21298 * 120.00082 * 0.58798 * 14 13 4 16 16 N 1.34777 * 119.99940 * 180.58720 * 14 13 4 17 17 C 1.46925 * 120.56150 * 353.99093 * 16 14 13 18 18 C 1.53427 * 107.78086 * 224.64481 * 17 16 14 19 19 C 1.52844 * 108.87029 * 296.73877 * 18 17 16 20 20 C 1.50601 * 110.51477 * 51.44757 * 19 18 17 21 21 C 1.38501 * 118.88124 * 159.45337 * 20 19 18 22 22 C 1.38552 * 120.26594 * 179.75093 * 21 20 19 23 23 O 1.35970 * 119.98285 * 179.68504 * 22 21 20 24 24 C 1.42898 * 117.00256 * 180.02562 * 23 22 21 25 25 C 1.38749 * 120.03752 * 359.96254 * 22 21 20 26 26 C 1.38002 * 119.84376 * 0.08877 * 25 22 21 27 27 C 1.38558 * 121.51004 * 339.29988 * 20 19 18 28 28 H 1.08994 * 109.47521 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47327 * 300.00464 * 1 2 3 30 30 H 1.09005 * 109.47176 * 59.99874 * 1 2 3 31 31 H 1.09003 * 109.46873 * 240.00349 * 2 1 3 32 32 H 1.08993 * 109.46945 * 120.00466 * 2 1 3 33 33 H 1.08999 * 109.47322 * 59.99533 * 3 2 1 34 34 H 1.09005 * 109.47122 * 300.00159 * 3 2 1 35 35 H 0.97002 * 120.00141 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46931 * 330.00125 * 13 4 3 37 37 H 1.08994 * 109.47061 * 209.99739 * 13 4 3 38 38 H 1.08996 * 109.80227 * 105.07211 * 17 16 14 39 39 H 1.09003 * 109.84736 * 344.24243 * 17 16 14 40 40 H 1.09001 * 109.57138 * 176.92629 * 18 17 16 41 41 H 1.08997 * 109.67697 * 56.61578 * 18 17 16 42 42 H 1.08998 * 109.26688 * 291.18362 * 19 18 17 43 43 H 1.08998 * 109.23818 * 171.70104 * 19 18 17 44 44 H 1.08002 * 119.86619 * 359.77162 * 21 20 19 45 45 H 1.09002 * 109.46878 * 59.99615 * 24 23 22 46 46 H 1.09000 * 109.47385 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.47284 * 300.00411 * 24 23 22 48 48 H 1.07995 * 120.07758 * 180.02562 * 25 22 21 49 49 H 1.07996 * 119.94583 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.3801 1.1834 6 1 3.6608 1.1827 2.1039 7 6 5.5650 1.5706 1.2006 8 7 6.1413 2.2914 0.2621 9 14 6.5973 0.8041 2.5557 10 1 6.4400 -0.6722 2.5228 11 1 8.0252 1.1551 2.3488 12 1 6.1470 1.3206 3.8732 13 6 4.2371 1.5091 -1.2679 14 6 4.4881 2.9508 -1.6277 15 8 4.1036 3.8353 -0.8921 16 7 5.1398 3.2574 -2.7669 17 6 5.7257 2.1988 -3.6004 18 6 7.1315 2.6528 -4.0148 19 6 7.0114 3.9122 -4.8725 20 6 6.1611 4.9439 -4.1792 21 6 6.2751 6.2705 -4.5602 22 6 5.5028 7.2426 -3.9451 23 8 5.6241 8.5442 -4.3193 24 6 4.7976 9.4934 -3.6427 25 6 4.6099 6.8894 -2.9436 26 6 4.4946 5.5686 -2.5608 27 6 5.2708 4.5936 -3.1768 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 7.1020 2.4249 0.2744 36 1 3.6477 1.0360 -2.0532 37 1 5.1895 0.9892 -1.1650 38 1 5.1112 2.0446 -4.4873 39 1 5.7901 1.2720 -3.0304 40 1 7.6151 1.8637 -4.5906 41 1 7.7234 2.8714 -3.1261 42 1 6.5559 3.6542 -5.8285 43 1 8.0055 4.3239 -5.0472 44 1 6.9686 6.5484 -5.3401 45 1 5.0198 9.4734 -2.5758 46 1 4.9935 10.4911 -4.0357 47 1 3.7492 9.2399 -3.8002 48 1 4.0074 7.6466 -2.4640 49 1 3.7998 5.2918 -1.7817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350648678.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:24 Heat of formation + Delta-G solvation = -26.535494 kcal Electronic energy + Delta-G solvation = -29931.652521 eV Core-core repulsion = 26052.618605 eV Total energy + Delta-G solvation = -3879.033915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.82554 -40.36078 -38.85328 -37.41100 -36.59757 -34.65106 -34.21880 -32.48303 -31.25214 -30.95475 -28.96105 -27.67854 -27.31053 -26.37871 -24.33467 -23.86667 -23.38404 -21.95138 -21.29372 -20.12653 -18.66497 -18.52343 -18.00141 -17.71948 -17.09513 -16.60452 -16.35421 -16.13229 -15.94133 -15.57785 -15.52710 -15.05670 -14.88183 -14.65615 -14.46213 -14.17327 -14.03396 -13.88930 -13.70417 -13.54625 -13.32318 -13.13706 -13.07302 -12.65441 -12.54312 -12.51040 -12.25517 -12.13532 -12.07307 -12.05710 -11.87534 -11.80690 -11.71096 -11.61342 -11.37328 -10.61191 -10.39569 -10.00634 -9.66135 -8.85477 -8.28415 -7.88470 -5.14502 0.37691 0.54506 1.46671 1.48600 1.55581 2.14755 2.32222 2.45424 2.56938 2.93233 3.26141 3.58385 3.76365 3.91033 4.01316 4.11354 4.20525 4.22189 4.24308 4.32364 4.37346 4.39871 4.43555 4.54844 4.61239 4.63919 4.69582 4.75539 4.76750 4.79197 4.88591 4.93256 4.99820 5.06444 5.09000 5.16443 5.22592 5.23727 5.26877 5.39102 5.43500 5.50605 5.55023 5.62237 5.67055 5.68231 6.17554 6.25739 6.54397 6.75998 7.11899 7.73163 7.92501 8.25697 9.17639 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.003877 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.212945 B = 7221.104975 C = 7770.870025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.150 3.850 4 N -0.590 5.590 5 C -0.257 4.257 6 H 0.070 0.930 7 C -0.044 4.044 8 N -0.911 5.911 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.299 1.299 12 H -0.290 1.290 13 C 0.172 3.828 14 C 0.529 3.471 15 O -0.551 6.551 16 N -0.566 5.566 17 C 0.101 3.899 18 C -0.128 4.128 19 C -0.068 4.068 20 C -0.093 4.093 21 C -0.134 4.134 22 C 0.084 3.916 23 O -0.331 6.331 24 C 0.021 3.979 25 C -0.194 4.194 26 C -0.146 4.146 27 C 0.123 3.877 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.244 0.756 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.042 0.958 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.153 0.847 45 H 0.050 0.950 46 H 0.125 0.875 47 H 0.058 0.942 48 H 0.134 0.866 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 2.439 -14.372 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.025 3.975 4 N -0.310 5.310 5 C -0.387 4.387 6 H 0.088 0.912 7 C -0.239 4.239 8 N -0.558 5.558 9 Si 0.787 3.213 10 H -0.201 1.201 11 H -0.225 1.225 12 H -0.217 1.217 13 C 0.042 3.958 14 C 0.319 3.681 15 O -0.428 6.428 16 N -0.291 5.291 17 C -0.020 4.020 18 C -0.166 4.166 19 C -0.105 4.105 20 C -0.096 4.096 21 C -0.153 4.153 22 C 0.039 3.961 23 O -0.245 6.245 24 C -0.073 4.073 25 C -0.213 4.213 26 C -0.166 4.166 27 C 0.028 3.972 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.134 0.866 41 H 0.061 0.939 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.171 0.829 45 H 0.069 0.931 46 H 0.144 0.856 47 H 0.077 0.923 48 H 0.152 0.848 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.677 2.902 -14.034 14.429 hybrid contribution 0.516 0.283 1.680 1.780 sum -1.161 3.186 -12.355 12.811 Atomic orbital electron populations 1.21667 0.94414 1.02088 1.01665 1.21914 0.96091 0.97507 1.01315 1.20923 0.82639 0.95459 0.98499 1.44185 1.01133 1.83702 1.01972 1.19353 0.90248 1.41457 0.87627 0.91221 1.25276 0.98212 0.99857 1.00567 1.70082 1.09197 1.38554 1.37935 0.85482 0.77405 0.79171 0.79207 1.20097 1.22517 1.21651 1.20679 0.97718 0.90210 0.87211 1.22534 0.74346 0.94117 0.77073 1.90288 1.53067 1.50116 1.49357 1.46185 1.54606 1.04718 1.23605 1.22090 0.95004 0.89985 0.94921 1.21822 0.95790 0.98922 1.00052 1.20458 0.99332 0.92319 0.98349 1.19636 0.97045 0.95181 0.97772 1.20324 1.02085 0.89908 1.02976 1.18969 0.97142 0.84425 0.95565 1.85990 1.62820 1.14122 1.61595 1.23248 0.94500 0.92126 0.97448 1.21243 1.02766 0.96785 1.00514 1.21919 1.00870 0.92689 1.01121 1.18036 0.97091 0.85113 0.96961 0.91482 0.93168 0.92418 0.92347 0.93427 0.95390 0.94418 0.94643 0.91146 0.89472 0.89044 0.89411 0.86575 0.93879 0.87886 0.88662 0.82917 0.93128 0.85644 0.92317 0.84819 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.92 16 2 C -0.13 -4.31 6.25 30.59 0.19 -4.11 16 3 C 0.15 6.28 5.67 86.38 0.49 6.77 16 4 N -0.59 -29.14 2.02 -706.35 -1.43 -30.57 16 5 C -0.26 -14.11 9.69 84.03 0.81 -13.30 16 6 H 0.07 3.82 7.96 -2.91 -0.02 3.80 16 7 C -0.04 -2.41 4.85 84.86 0.41 -1.99 16 8 N -0.91 -52.00 8.99 21.65 0.19 -51.81 16 9 Si 0.96 45.18 29.63 68.60 2.03 47.22 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 13 C 0.17 7.81 3.95 85.63 0.34 8.15 16 14 C 0.53 25.40 5.62 87.66 0.49 25.89 16 15 O -0.55 -31.33 12.72 -3.09 -0.04 -31.37 16 16 N -0.57 -22.70 2.98 -629.17 -1.87 -24.57 16 17 C 0.10 2.97 6.21 86.44 0.54 3.51 16 18 C -0.13 -3.18 6.11 30.69 0.19 -2.99 16 19 C -0.07 -1.54 5.77 29.77 0.17 -1.37 16 20 C -0.09 -2.96 5.76 -19.76 -0.11 -3.08 16 21 C -0.13 -4.01 9.60 22.41 0.22 -3.79 16 22 C 0.08 2.73 6.68 22.47 0.15 2.88 16 23 O -0.33 -9.25 10.50 -93.21 -0.98 -10.23 16 24 C 0.02 0.43 9.81 113.37 1.11 1.54 16 25 C -0.19 -6.95 9.03 22.34 0.20 -6.75 16 26 C -0.15 -6.23 8.87 22.40 0.20 -6.03 16 27 C 0.12 4.91 6.32 38.04 0.24 5.15 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.03 1.23 8.06 -2.39 -0.02 1.22 16 34 H 0.04 1.52 8.05 -2.38 -0.02 1.50 16 35 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 36 H 0.07 2.68 8.07 -2.39 -0.02 2.66 16 37 H 0.09 4.21 5.60 -2.39 -0.01 4.20 16 38 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.09 2.62 6.14 -2.39 -0.01 2.61 16 40 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 44 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 45 H 0.05 1.05 7.65 -2.39 -0.02 1.03 16 46 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 1.11 7.67 -2.39 -0.02 1.09 16 48 H 0.13 4.23 6.30 -2.91 -0.02 4.21 16 49 H 0.14 6.76 4.97 -21.47 -0.11 6.66 16 Total: -1.00 -73.14 384.62 5.10 -68.04 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.84 Total: 25.74 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 6.35 Total: 7.55 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -3.11 Total: -106.94 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.02 Total: -41.60 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.22 kcal Total: -73.14 5.10 -68.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350648678.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.501 kcal (2) G-P(sol) polarization free energy of solvation -73.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds