Wall clock time and date at job start Tue Mar 31 2020 16:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47240 * 2 1 4 4 N 1.46496 * 109.47307 * 179.97438 * 3 2 1 5 5 C 1.46501 * 120.00143 * 275.00131 * 4 3 2 6 6 C 1.52996 * 109.46989 * 274.99636 * 5 4 3 7 7 N 1.46896 * 109.47027 * 179.97438 * 6 5 4 8 8 C 1.48531 * 110.99896 * 52.60916 * 7 6 5 9 9 C 1.54943 * 103.22840 * 159.72057 * 8 7 6 10 10 C 1.54599 * 102.92104 * 322.58367 * 9 8 7 11 11 C 1.47906 * 111.00011 * 170.00226 * 7 6 5 12 12 S 1.65608 * 119.99953 * 94.99666 * 4 3 2 13 13 O 1.42095 * 104.27841 * 206.07470 * 12 4 3 14 14 O 1.42102 * 104.27658 * 333.93185 * 12 4 3 15 15 C 1.81406 * 104.44741 * 90.00111 * 12 4 3 16 16 C 1.52991 * 109.46937 * 179.97438 * 15 12 4 17 17 C 1.52998 * 109.47008 * 180.02562 * 16 15 12 18 18 C 1.50706 * 109.47352 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99613 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00409 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00034 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99773 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47126 * 90.00310 * 22 20 18 24 24 H 1.48498 * 109.47084 * 210.00519 * 22 20 18 25 25 H 1.48498 * 109.47229 * 330.00301 * 22 20 18 26 26 H 1.09000 * 109.46806 * 300.00093 * 1 2 3 27 27 H 1.08998 * 109.46889 * 60.00232 * 1 2 3 28 28 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46806 * 239.99907 * 2 1 3 30 30 H 1.09002 * 109.46824 * 120.00275 * 2 1 3 31 31 H 1.08999 * 109.47175 * 59.99669 * 3 2 1 32 32 H 1.09006 * 109.46715 * 299.99965 * 3 2 1 33 33 H 1.09001 * 109.46709 * 34.99582 * 5 4 3 34 34 H 1.09001 * 109.46811 * 154.99698 * 5 4 3 35 35 H 1.09000 * 109.47226 * 300.00092 * 6 5 4 36 36 H 1.09008 * 109.47018 * 60.00095 * 6 5 4 37 37 H 1.09003 * 110.66474 * 278.15066 * 8 7 6 38 38 H 1.08990 * 110.67216 * 41.28258 * 8 7 6 39 39 H 1.08997 * 110.72350 * 204.22244 * 9 8 7 40 40 H 1.09002 * 110.72218 * 80.93806 * 9 8 7 41 41 H 1.09004 * 110.30596 * 263.04561 * 10 9 8 42 42 H 1.08995 * 110.31057 * 140.86998 * 10 9 8 43 43 H 1.08997 * 109.91502 * 333.50857 * 11 7 6 44 44 H 1.08998 * 109.91879 * 94.60311 * 11 7 6 45 45 H 1.09000 * 109.47167 * 300.00580 * 15 12 4 46 46 H 1.09000 * 109.46895 * 59.99901 * 15 12 4 47 47 H 1.09008 * 109.47545 * 300.00011 * 16 15 12 48 48 H 1.09000 * 109.47377 * 60.00235 * 16 15 12 49 49 H 1.09004 * 109.46841 * 299.99680 * 17 16 15 50 50 H 1.08996 * 109.47424 * 60.00171 * 17 16 15 51 51 H 0.96999 * 119.99678 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.3320 1.2648 6 6 4.3830 2.7197 1.8925 7 7 5.1164 2.6089 3.1604 8 6 6.3966 1.8794 2.9728 9 6 7.2335 2.3096 4.2038 10 6 6.8465 3.7957 4.3826 11 6 5.4855 3.9445 3.6777 12 16 4.3337 1.5672 -1.4278 13 8 5.5800 0.9368 -1.1662 14 8 3.4380 1.0444 -2.3993 15 6 4.5601 3.3513 -1.6654 16 6 5.3232 3.5994 -2.9680 17 6 5.5147 5.1041 -3.1681 18 6 6.2659 5.3487 -4.4515 19 1 6.5760 4.5142 -5.0631 20 6 6.5581 6.6375 -4.8445 21 7 7.2140 6.8509 -5.9642 22 14 6.0222 8.0807 -3.7864 23 1 7.0923 8.4013 -2.8079 24 1 5.7716 9.2620 -4.6507 25 1 4.7768 7.7261 -3.0595 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8901 33 1 3.6893 0.6808 1.9461 34 1 5.2254 0.9125 1.0769 35 1 4.9306 3.3709 1.2112 36 1 3.3946 3.1392 2.0804 37 1 6.2299 0.8022 2.9784 38 1 6.8843 2.1895 2.0487 39 1 8.2995 2.2105 3.9991 40 1 6.9528 1.7295 5.0828 41 1 7.5892 4.4393 3.9111 42 1 6.7526 4.0374 5.4413 43 1 5.5700 4.6518 2.8527 44 1 4.7326 4.2893 4.3865 45 1 3.5859 3.8376 -1.7162 46 1 5.1270 3.7601 -0.8290 47 1 6.2975 3.1132 -2.9167 48 1 4.7567 3.1905 -3.8046 49 1 4.5406 5.5907 -3.2193 50 1 6.0815 5.5127 -2.3315 51 1 7.4192 7.7576 -6.2408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352632861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:38 Heat of formation + Delta-G solvation = -86.742034 kcal Electronic energy + Delta-G solvation = -27922.303563 eV Core-core repulsion = 24176.102848 eV Total energy + Delta-G solvation = -3746.200716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.36188 -37.33513 -37.04280 -35.81403 -34.85818 -33.82030 -32.24903 -32.02678 -29.27851 -28.42493 -28.03764 -25.69742 -23.84032 -23.08900 -21.70557 -21.11043 -20.94471 -20.33243 -18.75597 -17.70920 -16.99712 -16.82158 -16.30318 -15.98892 -15.90201 -15.20832 -14.79499 -14.72351 -14.34853 -14.26736 -14.08920 -13.91878 -13.35441 -12.99494 -12.90284 -12.70025 -12.44346 -12.35345 -12.28731 -12.17440 -11.98919 -11.90119 -11.78450 -11.67562 -11.63172 -11.52379 -11.47192 -11.36410 -11.05311 -11.01001 -10.97317 -10.81548 -10.74492 -10.13312 -9.91369 -9.76039 -9.31765 -9.10171 -8.72950 -8.61801 -6.11312 -4.10709 0.31804 2.58355 3.23383 3.31226 3.33056 3.69864 3.89325 4.19316 4.36111 4.37289 4.41496 4.45005 4.70085 4.76130 4.80419 4.86747 4.92316 4.98711 5.05111 5.07943 5.14619 5.21933 5.23258 5.27391 5.37337 5.41508 5.47712 5.54281 5.57131 5.59891 5.69373 5.71301 5.72928 5.78563 5.83876 5.86911 5.92040 6.06961 6.08807 6.13287 6.22227 6.38454 6.56485 6.62633 6.74082 7.08304 7.22515 7.67783 8.44661 8.93007 9.49733 11.02009 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008262 B = 0.003948 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.074214 B = 7090.856775 C = 9343.079303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.124 3.876 4 N -1.001 6.001 5 C 0.115 3.885 6 C 0.020 3.980 7 N -0.514 5.514 8 C 0.024 3.976 9 C -0.123 4.123 10 C -0.132 4.132 11 C 0.034 3.966 12 S 2.596 3.404 13 O -0.957 6.957 14 O -0.953 6.953 15 C -0.618 4.618 16 C -0.097 4.097 17 C -0.003 4.003 18 C -0.527 4.527 19 H 0.075 0.925 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.879 3.121 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.266 1.266 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.020 0.980 50 H 0.014 0.986 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.015 -10.348 22.444 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.001 4.001 4 N -0.837 5.837 5 C -0.011 4.011 6 C -0.110 4.110 7 N -0.239 5.239 8 C -0.104 4.104 9 C -0.161 4.161 10 C -0.170 4.170 11 C -0.094 4.094 12 S 2.692 3.308 13 O -0.948 6.948 14 O -0.943 6.943 15 C -0.749 4.749 16 C -0.136 4.136 17 C -0.042 4.042 18 C -0.565 4.565 19 H 0.093 0.907 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.191 1.191 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.038 0.962 50 H 0.033 0.967 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.043 -11.229 22.163 26.439 hybrid contribution 0.157 2.133 0.113 2.141 sum -8.886 -9.096 22.276 25.650 Atomic orbital electron populations 1.21698 0.95199 1.01943 1.01914 1.21952 0.96143 0.97254 1.03015 1.21334 0.78134 0.97496 1.03138 1.57685 1.14889 1.89049 1.22035 1.21395 0.98205 0.96534 0.84969 1.22869 0.99858 0.97899 0.90336 1.64796 1.19092 1.14605 1.25359 1.23375 0.89476 0.99783 0.97769 1.22477 0.99609 0.95757 0.98298 1.22404 0.96412 0.97141 1.01079 1.22898 0.96979 0.90433 0.99125 1.05552 0.73886 0.78425 0.72966 1.93554 1.44043 1.73356 1.83800 1.93579 1.64522 1.77161 1.59033 1.30716 1.10503 1.24609 1.09050 1.21310 0.98707 1.02526 0.91084 1.19521 0.97096 0.89978 0.97608 1.21130 1.35904 0.94059 1.05454 0.90708 1.25016 0.94519 0.98871 0.94931 1.69908 1.40216 1.21331 1.22348 0.86789 0.79635 0.82286 0.80636 1.20234 1.21182 1.19093 0.92737 0.92321 0.92522 0.90885 0.91707 0.90398 0.89977 0.89175 0.88635 0.94236 0.89840 0.89559 0.92897 0.90893 0.90763 0.91333 0.91017 0.93448 0.90269 0.85413 0.85791 0.91082 0.90936 0.96180 0.96745 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.14 -1.34 6.26 -26.73 -0.17 -1.50 16 3 C 0.12 1.15 5.26 -4.05 -0.02 1.13 16 4 N -1.00 -10.91 2.71 -114.38 -0.31 -11.22 16 5 C 0.11 1.12 5.32 -4.04 -0.02 1.10 16 6 C 0.02 0.19 5.35 -3.83 -0.02 0.17 16 7 N -0.51 -4.81 5.40 -230.45 -1.24 -6.05 16 8 C 0.02 0.21 5.10 -1.90 -0.01 0.21 16 9 C -0.12 -0.95 7.06 -24.87 -0.18 -1.13 16 10 C -0.13 -1.02 6.93 -25.37 -0.18 -1.20 16 11 C 0.03 0.29 6.70 -2.75 -0.02 0.27 16 12 S 2.60 37.93 5.37 -107.50 -0.58 37.35 16 13 O -0.96 -16.39 16.53 -57.54 -0.95 -17.34 16 14 O -0.95 -16.27 16.75 -57.54 -0.96 -17.23 16 15 C -0.62 -9.09 6.18 37.15 0.23 -8.87 16 16 C -0.10 -1.90 5.16 -26.74 -0.14 -2.04 16 17 C 0.00 -0.08 4.04 -27.88 -0.11 -0.19 16 18 C -0.53 -15.02 9.66 -34.44 -0.33 -15.36 16 19 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 22 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 32 H 0.08 0.76 7.61 -51.93 -0.40 0.37 16 33 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.10 1.04 5.47 -51.93 -0.28 0.76 16 35 H 0.04 0.40 6.63 -51.93 -0.34 0.06 16 36 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.09 0.73 7.67 -51.93 -0.40 0.33 16 38 H 0.05 0.54 8.00 -51.93 -0.42 0.13 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.44 7.57 -51.93 -0.39 0.04 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 46 H 0.12 1.62 6.96 -51.92 -0.36 1.25 16 47 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 48 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 49 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 50 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 51 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -34.05 408.27 -12.17 -46.22 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -9.69 Total: -1.43 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -0.69 Total: -26.29 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.78 Total: -44.15 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.91 Total: -34.57 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 37.93 SS G_CDS: -0.58 Total: 37.35 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.05 -12.17 -46.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352632861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.519 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds