Wall clock time and date at job start Tue Mar 31 2020 16:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47240 * 2 1 4 4 N 1.46496 * 109.47307 * 179.97438 * 3 2 1 5 5 C 1.46501 * 120.00143 * 275.00131 * 4 3 2 6 6 C 1.52996 * 109.46989 * 274.99636 * 5 4 3 7 7 N 1.46896 * 109.47027 * 179.97438 * 6 5 4 8 8 C 1.48531 * 110.99896 * 52.60916 * 7 6 5 9 9 C 1.54943 * 103.22840 * 159.72057 * 8 7 6 10 10 C 1.54599 * 102.92104 * 322.58367 * 9 8 7 11 11 C 1.47906 * 111.00011 * 170.00226 * 7 6 5 12 12 S 1.65608 * 119.99953 * 94.99666 * 4 3 2 13 13 O 1.42095 * 104.27841 * 206.07470 * 12 4 3 14 14 O 1.42102 * 104.27658 * 333.93185 * 12 4 3 15 15 C 1.81406 * 104.44741 * 90.00111 * 12 4 3 16 16 C 1.52991 * 109.46937 * 179.97438 * 15 12 4 17 17 C 1.52998 * 109.47008 * 180.02562 * 16 15 12 18 18 C 1.50706 * 109.47352 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99613 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00409 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00034 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99773 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47126 * 90.00310 * 22 20 18 24 24 H 1.48498 * 109.47084 * 210.00519 * 22 20 18 25 25 H 1.48498 * 109.47229 * 330.00301 * 22 20 18 26 26 H 1.09000 * 109.46806 * 300.00093 * 1 2 3 27 27 H 1.08998 * 109.46889 * 60.00232 * 1 2 3 28 28 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46806 * 239.99907 * 2 1 3 30 30 H 1.09002 * 109.46824 * 120.00275 * 2 1 3 31 31 H 1.08999 * 109.47175 * 59.99669 * 3 2 1 32 32 H 1.09006 * 109.46715 * 299.99965 * 3 2 1 33 33 H 1.09001 * 109.46709 * 34.99582 * 5 4 3 34 34 H 1.09001 * 109.46811 * 154.99698 * 5 4 3 35 35 H 1.09000 * 109.47226 * 300.00092 * 6 5 4 36 36 H 1.09008 * 109.47018 * 60.00095 * 6 5 4 37 37 H 1.09003 * 110.66474 * 278.15066 * 8 7 6 38 38 H 1.08990 * 110.67216 * 41.28258 * 8 7 6 39 39 H 1.08997 * 110.72350 * 204.22244 * 9 8 7 40 40 H 1.09002 * 110.72218 * 80.93806 * 9 8 7 41 41 H 1.09004 * 110.30596 * 263.04561 * 10 9 8 42 42 H 1.08995 * 110.31057 * 140.86998 * 10 9 8 43 43 H 1.08997 * 109.91502 * 333.50857 * 11 7 6 44 44 H 1.08998 * 109.91879 * 94.60311 * 11 7 6 45 45 H 1.09000 * 109.47167 * 300.00580 * 15 12 4 46 46 H 1.09000 * 109.46895 * 59.99901 * 15 12 4 47 47 H 1.09008 * 109.47545 * 300.00011 * 16 15 12 48 48 H 1.09000 * 109.47377 * 60.00235 * 16 15 12 49 49 H 1.09004 * 109.46841 * 299.99680 * 17 16 15 50 50 H 1.08996 * 109.47424 * 60.00171 * 17 16 15 51 51 H 0.96999 * 119.99678 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.3320 1.2648 6 6 4.3830 2.7197 1.8925 7 7 5.1164 2.6089 3.1604 8 6 6.3966 1.8794 2.9728 9 6 7.2335 2.3096 4.2038 10 6 6.8465 3.7957 4.3826 11 6 5.4855 3.9445 3.6777 12 16 4.3337 1.5672 -1.4278 13 8 5.5800 0.9368 -1.1662 14 8 3.4380 1.0444 -2.3993 15 6 4.5601 3.3513 -1.6654 16 6 5.3232 3.5994 -2.9680 17 6 5.5147 5.1041 -3.1681 18 6 6.2659 5.3487 -4.4515 19 1 6.5760 4.5142 -5.0631 20 6 6.5581 6.6375 -4.8445 21 7 7.2140 6.8509 -5.9642 22 14 6.0222 8.0807 -3.7864 23 1 7.0923 8.4013 -2.8079 24 1 5.7716 9.2620 -4.6507 25 1 4.7768 7.7261 -3.0595 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8901 33 1 3.6893 0.6808 1.9461 34 1 5.2254 0.9125 1.0769 35 1 4.9306 3.3709 1.2112 36 1 3.3946 3.1392 2.0804 37 1 6.2299 0.8022 2.9784 38 1 6.8843 2.1895 2.0487 39 1 8.2995 2.2105 3.9991 40 1 6.9528 1.7295 5.0828 41 1 7.5892 4.4393 3.9111 42 1 6.7526 4.0374 5.4413 43 1 5.5700 4.6518 2.8527 44 1 4.7326 4.2893 4.3865 45 1 3.5859 3.8376 -1.7162 46 1 5.1270 3.7601 -0.8290 47 1 6.2975 3.1132 -2.9167 48 1 4.7567 3.1905 -3.8046 49 1 4.5406 5.5907 -3.2193 50 1 6.0815 5.5127 -2.3315 51 1 7.4192 7.7576 -6.2408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352632861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:38 Heat of formation + Delta-G solvation = -110.531472 kcal Electronic energy + Delta-G solvation = -27923.335151 eV Core-core repulsion = 24176.102848 eV Total energy + Delta-G solvation = -3747.232303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.04462 -38.36646 -38.05405 -37.07855 -36.56874 -34.52454 -34.28432 -32.72961 -30.22207 -29.92941 -28.73747 -26.44327 -25.48728 -23.98226 -22.47465 -22.24074 -21.72579 -21.47520 -19.84691 -19.01523 -18.71729 -17.78030 -17.36794 -16.90299 -16.83430 -16.26101 -16.23308 -15.71108 -15.49915 -15.37234 -14.92962 -14.85892 -14.62042 -14.16712 -14.02894 -13.75292 -13.67939 -13.48339 -13.33259 -13.29005 -13.24299 -13.00140 -12.77010 -12.73331 -12.62223 -12.53546 -12.41523 -12.23838 -12.13676 -12.01350 -11.89604 -11.75582 -11.69939 -11.52504 -11.45468 -11.40130 -11.26560 -10.80940 -10.03034 -9.43657 -8.33009 -6.39329 -0.85072 1.33477 1.36200 1.47767 1.56710 2.33148 2.72323 2.96260 3.01894 3.10929 3.53981 3.70981 3.76460 3.77974 3.80332 4.04682 4.10254 4.13053 4.21860 4.24314 4.32137 4.37922 4.46040 4.49054 4.53573 4.65224 4.71070 4.74923 4.76734 4.82164 4.88236 4.91527 4.96030 4.98772 5.03065 5.07656 5.11409 5.22065 5.24119 5.27072 5.32453 5.36866 5.39556 5.44100 5.58437 5.61287 5.88941 6.03897 6.21576 6.68561 7.25407 8.84045 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008262 B = 0.003948 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.074214 B = 7090.856775 C = 9343.079303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.116 3.884 4 N -0.989 5.989 5 C 0.116 3.884 6 C 0.021 3.979 7 N -0.515 5.515 8 C 0.018 3.982 9 C -0.121 4.121 10 C -0.132 4.132 11 C 0.030 3.970 12 S 2.608 3.392 13 O -0.988 6.988 14 O -0.981 6.981 15 C -0.612 4.612 16 C -0.102 4.102 17 C -0.003 4.003 18 C -0.546 4.546 19 H 0.030 0.970 20 C 0.003 3.997 21 N -0.951 5.951 22 Si 0.954 3.046 23 H -0.265 1.265 24 H -0.283 1.283 25 H -0.239 1.239 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.089 0.911 45 H 0.155 0.845 46 H 0.145 0.855 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.033 0.967 50 H 0.028 0.972 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.027 -9.234 25.966 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C -0.008 4.008 4 N -0.827 5.827 5 C -0.010 4.010 6 C -0.109 4.109 7 N -0.240 5.240 8 C -0.110 4.110 9 C -0.159 4.159 10 C -0.170 4.170 11 C -0.098 4.098 12 S 2.705 3.295 13 O -0.978 6.978 14 O -0.972 6.972 15 C -0.743 4.743 16 C -0.141 4.141 17 C -0.041 4.041 18 C -0.584 4.584 19 H 0.048 0.952 20 C -0.194 4.194 21 N -0.591 5.591 22 Si 0.776 3.224 23 H -0.189 1.189 24 H -0.209 1.209 25 H -0.162 1.162 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.173 0.827 46 H 0.163 0.837 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.051 0.949 50 H 0.047 0.953 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.058 -10.139 25.687 29.748 hybrid contribution 0.806 1.683 -1.016 2.125 sum -10.253 -8.456 24.671 28.023 Atomic orbital electron populations 1.21686 0.93828 1.02402 1.02593 1.21963 0.97366 0.97158 1.02080 1.21627 0.76618 0.97831 1.04750 1.57358 1.15617 1.88666 1.21030 1.21485 0.97706 0.97374 0.84430 1.22883 1.00589 0.97234 0.90227 1.64833 1.18993 1.14992 1.25163 1.23423 0.89777 1.00087 0.97690 1.22488 0.99636 0.95929 0.97893 1.22422 0.95881 0.96951 1.01757 1.22973 0.97755 0.89918 0.99153 1.04906 0.73144 0.78109 0.73372 1.93513 1.45755 1.74126 1.84411 1.93541 1.65059 1.77765 1.60798 1.30632 1.11535 1.25245 1.06853 1.21170 0.99096 1.00116 0.93758 1.19484 0.96867 0.92622 0.95167 1.21537 1.36483 0.93110 1.07238 0.95207 1.26095 0.94416 1.02490 0.96410 1.70078 1.41976 1.22341 1.24717 0.85613 0.80462 0.77538 0.78795 1.18947 1.20897 1.16243 0.90900 0.92758 0.92271 0.93714 0.90810 0.87110 0.89969 0.87271 0.90065 0.95051 0.88234 0.89189 0.94553 0.90548 0.90005 0.91636 0.89753 0.94135 0.89294 0.82674 0.83652 0.92152 0.91810 0.94895 0.95345 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.99 0.71 -1.20 16 2 C -0.15 -2.44 6.26 30.60 0.19 -2.25 16 3 C 0.12 1.82 5.26 86.38 0.45 2.28 16 4 N -0.99 -19.59 2.71 -515.80 -1.40 -20.99 16 5 C 0.12 2.00 5.32 86.38 0.46 2.46 16 6 C 0.02 0.33 5.35 86.30 0.46 0.79 16 7 N -0.52 -8.43 5.40 -883.01 -4.76 -13.20 16 8 C 0.02 0.30 5.10 86.65 0.44 0.75 16 9 C -0.12 -1.67 7.06 31.80 0.22 -1.45 16 10 C -0.13 -1.77 6.93 31.48 0.22 -1.55 16 11 C 0.03 0.45 6.70 86.45 0.58 1.03 16 12 S 2.61 74.62 5.37 -56.49 -0.30 74.32 16 13 O -0.99 -34.13 16.53 -127.65 -2.11 -36.24 16 14 O -0.98 -33.56 16.75 -127.65 -2.14 -35.70 16 15 C -0.61 -16.87 6.18 71.98 0.44 -16.43 16 16 C -0.10 -4.00 5.16 30.59 0.16 -3.84 16 17 C 0.00 -0.13 4.04 29.85 0.12 -0.01 16 18 C -0.55 -31.87 9.66 25.60 0.25 -31.62 16 19 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 20 C 0.00 0.17 5.47 84.65 0.46 0.63 16 21 N -0.95 -60.11 13.96 21.45 0.30 -59.82 16 22 Si 0.95 43.20 27.47 68.60 1.88 45.09 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.04 1.00 7.90 -2.39 -0.02 0.98 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 1.06 8.11 -2.39 -0.02 1.04 16 32 H 0.08 1.32 7.61 -2.38 -0.02 1.30 16 33 H 0.11 1.52 8.11 -2.39 -0.02 1.50 16 34 H 0.08 1.69 5.47 -2.39 -0.01 1.68 16 35 H 0.03 0.56 6.63 -2.39 -0.02 0.54 16 36 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.09 1.42 7.67 -2.39 -0.02 1.40 16 38 H 0.04 0.73 8.00 -2.39 -0.02 0.71 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 41 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.04 0.66 7.57 -2.39 -0.02 0.64 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.16 3.42 8.14 -2.39 -0.02 3.40 16 46 H 0.15 3.40 6.96 -2.39 -0.02 3.38 16 47 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 48 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 49 H 0.03 1.42 7.20 -2.38 -0.02 1.40 16 50 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 51 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -75.88 408.27 -2.55 -78.43 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.81 Total: 18.51 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 5.18 Total: -50.41 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -5.87 Total: -94.00 kcal Atomic # 8 Polarization: -67.69 SS G_CDS: -4.25 Total: -71.94 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.09 kcal Atomic # 16 Polarization: 74.62 SS G_CDS: -0.30 Total: 74.32 kcal Total: -75.88 -2.55 -78.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352632861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.101 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds