Wall clock time and date at job start Tue Mar 31 2020 17:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47496 * 2 1 4 4 N 1.46501 * 109.47305 * 120.00406 * 2 1 3 5 5 C 1.34773 * 120.00396 * 84.99992 * 4 2 1 6 6 O 1.21286 * 119.99612 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00102 * 180.02562 * 5 4 2 8 8 N 1.46503 * 109.46714 * 179.97438 * 7 5 4 9 9 C 1.46500 * 120.00046 * 269.99624 * 8 7 5 10 10 C 1.34774 * 119.99939 * 90.00214 * 8 7 5 11 11 O 1.21284 * 120.00090 * 359.97438 * 10 8 7 12 12 C 1.50706 * 119.99980 * 179.97438 * 10 8 7 13 13 C 1.52994 * 109.46995 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.47363 * 54.05802 * 13 12 10 15 15 C 1.50705 * 109.47281 * 294.05789 * 13 12 10 16 16 H 1.07999 * 119.99468 * 330.08103 * 15 13 12 17 17 C 1.37873 * 120.00025 * 150.08844 * 15 13 12 18 18 N 1.31515 * 120.00158 * 6.56401 * 17 15 13 19 19 Si 1.86805 * 119.99647 * 186.56809 * 17 15 13 20 20 H 1.48498 * 109.47129 * 269.99471 * 19 17 15 21 21 H 1.48498 * 109.47291 * 29.99590 * 19 17 15 22 22 H 1.48503 * 109.46813 * 149.99580 * 19 17 15 23 23 C 1.50704 * 109.47072 * 174.05777 * 13 12 10 24 24 C 1.38232 * 120.00156 * 64.29986 * 23 13 12 25 25 C 1.38227 * 120.00423 * 179.81276 * 24 23 13 26 26 C 1.38238 * 119.99674 * 0.39266 * 25 24 23 27 27 C 1.38237 * 119.99909 * 359.86442 * 26 25 24 28 28 C 1.38229 * 119.99861 * 359.94762 * 27 26 25 29 29 H 1.08999 * 109.47158 * 299.99858 * 1 2 3 30 30 H 1.09001 * 109.47296 * 59.99654 * 1 2 3 31 31 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47158 * 240.00142 * 2 1 3 33 33 H 1.08999 * 109.47161 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47130 * 300.00447 * 3 2 1 35 35 H 1.08999 * 109.46801 * 59.99923 * 3 2 1 36 36 H 0.97004 * 119.99797 * 264.99948 * 4 2 1 37 37 H 1.08997 * 109.47141 * 59.99722 * 7 5 4 38 38 H 1.08998 * 109.46790 * 299.99313 * 7 5 4 39 39 H 1.09001 * 109.47153 * 270.00340 * 9 8 7 40 40 H 1.09005 * 109.47231 * 29.99977 * 9 8 7 41 41 H 1.08993 * 109.47434 * 150.00596 * 9 8 7 42 42 H 1.08999 * 109.46642 * 59.99829 * 12 10 8 43 43 H 1.09002 * 109.46876 * 299.99722 * 12 10 8 44 44 H 0.96995 * 120.00002 * 354.72529 * 18 17 15 45 45 H 1.08007 * 119.99790 * 359.97438 * 24 23 13 46 46 H 1.08004 * 120.00499 * 180.23296 * 25 24 23 47 47 H 1.08006 * 119.99774 * 179.83158 * 26 25 24 48 48 H 1.08002 * 119.99968 * 179.97438 * 27 26 25 49 49 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -2.0323 1.1943 6 8 1.8582 -2.6678 0.2025 7 6 2.6490 -2.7427 2.4249 8 7 2.6978 -4.1847 2.1705 9 6 1.5305 -5.0201 2.4632 10 6 3.8166 -4.7426 1.6672 11 8 4.7829 -4.0509 1.4245 12 6 3.8670 -6.2260 1.4059 13 6 5.2387 -6.5976 0.8393 14 1 6.0188 -6.2342 1.5082 15 6 5.4084 -5.9679 -0.5193 16 1 4.5457 -5.7930 -1.1449 17 6 6.6651 -5.6154 -0.9636 18 7 7.7272 -5.9442 -0.2611 19 14 6.8591 -4.6705 -2.5634 20 1 7.0012 -5.6279 -3.6896 21 1 5.6618 -3.8203 -2.7845 22 1 8.0686 -3.8122 -2.4877 23 6 5.3416 -8.0960 0.7149 24 6 4.5093 -8.7762 -0.1543 25 6 4.6063 -10.1501 -0.2713 26 6 5.5301 -10.8448 0.4869 27 6 6.3588 -10.1652 1.3600 28 6 6.2644 -8.7909 1.4741 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.2491 -0.1824 1.9894 37 1 1.9761 -2.5439 3.2591 38 1 3.6481 -2.3827 2.6702 39 1 1.5919 -5.3836 3.4890 40 1 0.6218 -4.4307 2.3404 41 1 1.5092 -5.8676 1.7782 42 1 3.0925 -6.4949 0.6876 43 1 3.7006 -6.7650 2.3386 44 1 7.6235 -6.3665 0.6059 45 1 3.7850 -8.2338 -0.7440 46 1 3.9586 -10.6811 -0.9532 47 1 5.6040 -11.9186 0.3974 48 1 7.0803 -10.7080 1.9527 49 1 6.9121 -8.2599 2.1559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353821734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:55 Heat of formation + Delta-G solvation = -52.089793 kcal Electronic energy + Delta-G solvation = -29118.128772 eV Core-core repulsion = 25237.986739 eV Total energy + Delta-G solvation = -3880.142033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.05252 -38.94464 -38.21568 -36.02328 -34.88506 -34.16383 -31.85359 -31.25976 -30.07291 -29.42101 -27.94829 -27.41518 -26.07676 -24.62357 -22.87082 -21.77542 -21.54961 -20.55211 -19.93100 -18.59234 -17.25919 -16.83632 -16.55206 -16.23255 -15.79347 -15.47057 -14.95861 -14.75151 -14.28363 -14.20517 -13.98782 -13.60197 -13.51109 -13.18932 -13.05211 -12.78561 -12.58168 -12.51595 -12.39964 -12.29072 -12.22213 -12.20282 -11.79380 -11.76542 -11.50443 -11.38453 -11.10878 -10.89711 -10.64565 -10.37898 -10.09676 -9.98148 -9.86537 -9.58192 -9.09378 -9.00791 -8.57219 -8.28612 -8.19557 -8.10063 -7.58511 -6.16859 -3.83066 2.23017 2.28731 2.78950 2.95609 3.48907 3.54177 3.59376 3.62464 3.76598 4.64734 4.65653 4.72034 4.85209 4.96146 5.01541 5.08709 5.27261 5.32542 5.35059 5.50653 5.52093 5.56212 5.61022 5.63069 5.67525 5.75691 5.77276 5.80356 5.81941 5.95592 6.05068 6.06566 6.16214 6.20626 6.35974 6.46879 6.49868 6.67159 6.77049 6.83763 6.97459 7.24558 7.26569 7.42087 7.53229 7.77460 7.84435 7.90553 8.30122 8.36167 8.60110 8.97827 9.06019 9.85109 11.23757 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.003547 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.695712 B = 7892.096513 C = 9140.140489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.159 4.159 4 N -0.733 5.733 5 C 0.495 3.505 6 O -0.520 6.520 7 C 0.101 3.899 8 N -0.617 5.617 9 C 0.089 3.911 10 C 0.523 3.477 11 O -0.496 6.496 12 C -0.112 4.112 13 C 0.072 3.928 14 H 0.050 0.950 15 C -0.563 4.563 16 H 0.046 0.954 17 C 0.033 3.967 18 N -0.909 5.909 19 Si 1.063 2.937 20 H -0.291 1.291 21 H -0.290 1.290 22 H -0.286 1.286 23 C -0.030 4.030 24 C -0.108 4.108 25 C -0.129 4.129 26 C -0.153 4.153 27 C -0.125 4.125 28 C -0.130 4.130 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.269 0.731 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.606 6.966 8.091 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 C -0.217 4.217 4 N -0.387 5.387 5 C 0.279 3.721 6 O -0.393 6.393 7 C -0.027 4.027 8 N -0.354 5.354 9 C -0.055 4.055 10 C 0.311 3.689 11 O -0.367 6.367 12 C -0.152 4.152 13 C 0.052 3.948 14 H 0.069 0.931 15 C -0.600 4.600 16 H 0.064 0.936 17 C -0.173 4.173 18 N -0.545 5.545 19 Si 0.893 3.107 20 H -0.218 1.218 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.030 4.030 24 C -0.126 4.126 25 C -0.147 4.147 26 C -0.172 4.172 27 C -0.143 4.143 28 C -0.148 4.148 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.231 0.769 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.115 7.463 6.154 16.297 hybrid contribution -1.158 -0.321 1.246 1.731 sum -14.273 7.142 7.400 17.593 Atomic orbital electron populations 1.22164 0.95532 1.02473 1.01721 1.20897 0.93882 0.92792 0.89416 1.22067 1.01998 0.95055 1.02591 1.46110 1.68852 1.07121 1.16615 1.21486 0.77461 0.82191 0.90914 1.90730 1.48240 1.65815 1.34558 1.21125 1.03937 0.82983 0.94616 1.47666 1.15138 1.05459 1.67160 1.21663 0.87709 0.95639 1.00447 1.20905 0.81293 0.91322 0.75337 1.90726 1.35026 1.63635 1.47353 1.21690 1.02414 0.90674 1.00443 1.17886 0.91485 0.86851 0.98533 0.93143 1.21566 0.95544 1.41938 1.00987 0.93612 1.25538 0.92291 0.95558 1.03873 1.70733 1.31030 1.39490 1.13208 0.83635 0.75534 0.76490 0.75042 1.21821 1.21577 1.21171 1.20820 0.92426 0.97837 0.91950 1.20932 1.00100 0.93148 0.98445 1.21008 0.99220 0.94764 0.99740 1.20818 0.98417 0.98682 0.99245 1.20956 0.99248 0.94660 0.99400 1.21058 0.99654 0.93655 1.00471 0.92704 0.91847 0.92177 0.89470 0.91802 0.91099 0.92236 0.76943 0.88348 0.87169 0.93044 0.92000 0.90728 0.90109 0.91689 0.91922 0.86729 0.87462 0.87614 0.87491 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.13 1.47 3.18 -67.93 -0.22 1.25 16 3 C -0.16 -1.27 9.38 37.16 0.35 -0.92 16 4 N -0.73 -8.19 5.08 -53.80 -0.27 -8.46 16 5 C 0.49 7.51 7.86 -10.99 -0.09 7.42 16 6 O -0.52 -10.44 16.09 5.55 0.09 -10.35 16 7 C 0.10 1.35 5.89 -5.19 -0.03 1.32 16 8 N -0.62 -10.01 2.36 -182.95 -0.43 -10.44 16 9 C 0.09 1.08 10.24 59.85 0.61 1.70 16 10 C 0.52 11.08 7.43 -10.98 -0.08 11.00 16 11 O -0.50 -12.80 14.60 5.55 0.08 -12.72 16 12 C -0.11 -2.30 3.49 -27.88 -0.10 -2.40 16 13 C 0.07 1.77 1.31 -92.92 -0.12 1.65 16 14 H 0.05 1.39 6.23 -51.93 -0.32 1.07 16 15 C -0.56 -16.01 6.40 -34.44 -0.22 -16.24 16 16 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 17 C 0.03 0.97 5.45 -17.82 -0.10 0.88 16 18 N -0.91 -28.39 13.63 55.43 0.76 -27.63 16 19 Si 1.06 27.70 29.91 -169.99 -5.08 22.61 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 C -0.03 -0.68 4.77 -104.62 -0.50 -1.17 16 24 C -0.11 -2.28 8.88 -39.59 -0.35 -2.64 16 25 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16 26 C -0.15 -2.73 10.05 -39.58 -0.40 -3.12 16 27 C -0.12 -2.33 10.05 -39.59 -0.40 -2.73 16 28 C -0.13 -2.78 9.67 -39.59 -0.38 -3.16 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.40 3.08 8.60 -40.82 -0.35 2.73 16 37 H 0.10 0.86 8.07 -51.93 -0.42 0.44 16 38 H 0.11 1.54 7.42 -51.93 -0.39 1.16 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.07 0.95 6.44 -51.93 -0.33 0.61 16 42 H 0.08 1.61 7.12 -51.93 -0.37 1.24 16 43 H 0.06 1.15 8.11 -51.93 -0.42 0.72 16 44 H 0.27 8.29 6.68 -40.82 -0.27 8.02 16 45 H 0.11 2.39 7.80 -52.48 -0.41 1.99 16 46 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 47 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 48 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 49 H 0.11 2.31 7.95 -52.49 -0.42 1.89 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -38.00 405.64 -8.77 -46.76 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.95 Total: 5.25 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.06 Total: -11.13 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.05 Total: -46.54 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.17 Total: -23.07 kcal Atomic # 14 Polarization: 27.70 SS G_CDS: -5.08 Total: 22.61 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -38.00 -8.77 -46.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353821734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.325 kcal (2) G-P(sol) polarization free energy of solvation -37.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds