Wall clock time and date at job start Tue Mar 31 2020 17:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47496 * 2 1 4 4 N 1.46501 * 109.47305 * 120.00406 * 2 1 3 5 5 C 1.34773 * 120.00396 * 84.99992 * 4 2 1 6 6 O 1.21286 * 119.99612 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00102 * 180.02562 * 5 4 2 8 8 N 1.46503 * 109.46714 * 179.97438 * 7 5 4 9 9 C 1.46500 * 120.00046 * 269.99624 * 8 7 5 10 10 C 1.34774 * 119.99939 * 90.00214 * 8 7 5 11 11 O 1.21284 * 120.00090 * 359.97438 * 10 8 7 12 12 C 1.50706 * 119.99980 * 179.97438 * 10 8 7 13 13 C 1.52994 * 109.46995 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.47363 * 54.05802 * 13 12 10 15 15 C 1.50705 * 109.47281 * 294.05789 * 13 12 10 16 16 H 1.07999 * 119.99468 * 330.08103 * 15 13 12 17 17 C 1.37873 * 120.00025 * 150.08844 * 15 13 12 18 18 N 1.31515 * 120.00158 * 6.56401 * 17 15 13 19 19 Si 1.86805 * 119.99647 * 186.56809 * 17 15 13 20 20 H 1.48498 * 109.47129 * 269.99471 * 19 17 15 21 21 H 1.48498 * 109.47291 * 29.99590 * 19 17 15 22 22 H 1.48503 * 109.46813 * 149.99580 * 19 17 15 23 23 C 1.50704 * 109.47072 * 174.05777 * 13 12 10 24 24 C 1.38232 * 120.00156 * 64.29986 * 23 13 12 25 25 C 1.38227 * 120.00423 * 179.81276 * 24 23 13 26 26 C 1.38238 * 119.99674 * 0.39266 * 25 24 23 27 27 C 1.38237 * 119.99909 * 359.86442 * 26 25 24 28 28 C 1.38229 * 119.99861 * 359.94762 * 27 26 25 29 29 H 1.08999 * 109.47158 * 299.99858 * 1 2 3 30 30 H 1.09001 * 109.47296 * 59.99654 * 1 2 3 31 31 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47158 * 240.00142 * 2 1 3 33 33 H 1.08999 * 109.47161 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47130 * 300.00447 * 3 2 1 35 35 H 1.08999 * 109.46801 * 59.99923 * 3 2 1 36 36 H 0.97004 * 119.99797 * 264.99948 * 4 2 1 37 37 H 1.08997 * 109.47141 * 59.99722 * 7 5 4 38 38 H 1.08998 * 109.46790 * 299.99313 * 7 5 4 39 39 H 1.09001 * 109.47153 * 270.00340 * 9 8 7 40 40 H 1.09005 * 109.47231 * 29.99977 * 9 8 7 41 41 H 1.08993 * 109.47434 * 150.00596 * 9 8 7 42 42 H 1.08999 * 109.46642 * 59.99829 * 12 10 8 43 43 H 1.09002 * 109.46876 * 299.99722 * 12 10 8 44 44 H 0.96995 * 120.00002 * 354.72529 * 18 17 15 45 45 H 1.08007 * 119.99790 * 359.97438 * 24 23 13 46 46 H 1.08004 * 120.00499 * 180.23296 * 25 24 23 47 47 H 1.08006 * 119.99774 * 179.83158 * 26 25 24 48 48 H 1.08002 * 119.99968 * 179.97438 * 27 26 25 49 49 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -2.0323 1.1943 6 8 1.8582 -2.6678 0.2025 7 6 2.6490 -2.7427 2.4249 8 7 2.6978 -4.1847 2.1705 9 6 1.5305 -5.0201 2.4632 10 6 3.8166 -4.7426 1.6672 11 8 4.7829 -4.0509 1.4245 12 6 3.8670 -6.2260 1.4059 13 6 5.2387 -6.5976 0.8393 14 1 6.0188 -6.2342 1.5082 15 6 5.4084 -5.9679 -0.5193 16 1 4.5457 -5.7930 -1.1449 17 6 6.6651 -5.6154 -0.9636 18 7 7.7272 -5.9442 -0.2611 19 14 6.8591 -4.6705 -2.5634 20 1 7.0012 -5.6279 -3.6896 21 1 5.6618 -3.8203 -2.7845 22 1 8.0686 -3.8122 -2.4877 23 6 5.3416 -8.0960 0.7149 24 6 4.5093 -8.7762 -0.1543 25 6 4.6063 -10.1501 -0.2713 26 6 5.5301 -10.8448 0.4869 27 6 6.3588 -10.1652 1.3600 28 6 6.2644 -8.7909 1.4741 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.2491 -0.1824 1.9894 37 1 1.9761 -2.5439 3.2591 38 1 3.6481 -2.3827 2.6702 39 1 1.5919 -5.3836 3.4890 40 1 0.6218 -4.4307 2.3404 41 1 1.5092 -5.8676 1.7782 42 1 3.0925 -6.4949 0.6876 43 1 3.7006 -6.7650 2.3386 44 1 7.6235 -6.3665 0.6059 45 1 3.7850 -8.2338 -0.7440 46 1 3.9586 -10.6811 -0.9532 47 1 5.6040 -11.9186 0.3974 48 1 7.0803 -10.7080 1.9527 49 1 6.9121 -8.2599 2.1559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353821734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:54 Heat of formation + Delta-G solvation = -77.361319 kcal Electronic energy + Delta-G solvation = -29119.224628 eV Core-core repulsion = 25237.986739 eV Total energy + Delta-G solvation = -3881.237889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38347 -40.42249 -39.73527 -37.13817 -36.35458 -35.98775 -33.38763 -32.78480 -31.61882 -30.84313 -29.23148 -28.13621 -27.51577 -26.44428 -24.63553 -23.22586 -22.73290 -21.73642 -21.50383 -20.11562 -18.77718 -18.38289 -18.16200 -17.44151 -17.24622 -16.80480 -16.33777 -15.99619 -15.78982 -15.72824 -15.62256 -15.11717 -14.90527 -14.60078 -14.36229 -14.06990 -13.97665 -13.91409 -13.77783 -13.48307 -13.29521 -13.21938 -13.17150 -13.09535 -12.86130 -12.73467 -12.64040 -12.34757 -12.13051 -11.98535 -11.95811 -11.73300 -11.48550 -11.15743 -10.76694 -10.65643 -10.34373 -10.13979 -9.64978 -9.60805 -9.28572 -8.48833 -6.12959 0.67032 0.73061 1.39576 1.51819 1.59082 1.66758 1.69867 2.04730 2.41403 2.54426 3.09399 3.33850 3.75866 3.81033 3.97567 4.10969 4.12105 4.22982 4.26393 4.27284 4.27976 4.28964 4.39798 4.41529 4.45666 4.59870 4.70606 4.71631 4.73812 4.79048 4.84287 4.87918 4.90676 4.99969 5.07798 5.20187 5.21373 5.28875 5.39055 5.40869 5.51708 5.56229 5.73735 5.81332 5.92862 6.22559 6.28203 6.36438 6.42874 6.55421 6.77142 7.27022 7.40897 7.59994 8.91879 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.003547 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.695712 B = 7892.096513 C = 9140.140489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.128 3.872 3 C -0.151 4.151 4 N -0.714 5.714 5 C 0.489 3.511 6 O -0.579 6.579 7 C 0.098 3.902 8 N -0.611 5.611 9 C 0.081 3.919 10 C 0.515 3.485 11 O -0.558 6.558 12 C -0.105 4.105 13 C 0.075 3.925 14 H 0.012 0.988 15 C -0.554 4.554 16 H 0.025 0.975 17 C -0.020 4.020 18 N -0.938 5.938 19 Si 1.097 2.903 20 H -0.269 1.269 21 H -0.294 1.294 22 H -0.284 1.284 23 C -0.054 4.054 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.143 4.143 27 C -0.123 4.123 28 C -0.151 4.151 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.417 0.583 37 H 0.156 0.844 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.259 0.741 45 H 0.106 0.894 46 H 0.142 0.858 47 H 0.148 0.852 48 H 0.138 0.862 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.686 6.200 9.211 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.023 3.977 3 C -0.208 4.208 4 N -0.369 5.369 5 C 0.275 3.725 6 O -0.458 6.458 7 C -0.029 4.029 8 N -0.345 5.345 9 C -0.061 4.061 10 C 0.304 3.696 11 O -0.435 6.435 12 C -0.145 4.145 13 C 0.056 3.944 14 H 0.030 0.970 15 C -0.592 4.592 16 H 0.043 0.957 17 C -0.219 4.219 18 N -0.577 5.577 19 Si 0.922 3.078 20 H -0.195 1.195 21 H -0.220 1.220 22 H -0.209 1.209 23 C -0.055 4.055 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.161 4.161 27 C -0.140 4.140 28 C -0.169 4.169 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.254 0.746 37 H 0.174 0.826 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.124 0.876 46 H 0.159 0.841 47 H 0.166 0.834 48 H 0.156 0.844 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.260 6.728 7.325 18.215 hybrid contribution -0.652 -0.101 0.983 1.184 sum -15.912 6.628 8.307 19.135 Atomic orbital electron populations 1.22081 0.93995 1.01311 1.03598 1.21005 0.95123 0.93979 0.87578 1.22016 1.01307 0.92963 1.04536 1.46000 1.67251 1.06079 1.17543 1.21832 0.76802 0.83285 0.90601 1.90707 1.51240 1.67258 1.36571 1.21448 1.04865 0.81021 0.95551 1.47631 1.14663 1.07201 1.65038 1.21966 0.86723 0.95246 1.02119 1.21023 0.82008 0.91385 0.75147 1.90693 1.37558 1.64723 1.50512 1.21554 1.00008 0.91259 1.01681 1.17688 0.92485 0.88427 0.95782 0.97026 1.21736 0.94287 1.41036 1.02110 0.95652 1.26589 0.92695 0.96428 1.06214 1.70809 1.31478 1.41887 1.13524 0.83183 0.75211 0.76017 0.73354 1.19493 1.22013 1.20939 1.20579 0.94352 0.96523 0.94056 1.20973 1.00209 0.94717 0.98504 1.21386 0.99466 0.93545 0.99781 1.21315 0.96654 1.00756 0.97362 1.21313 0.99731 0.93425 0.99576 1.21125 0.99529 0.95293 1.00952 0.90246 0.90527 0.94790 0.93729 0.92827 0.89871 0.89562 0.74618 0.82613 0.87995 0.89658 0.89924 0.91584 0.89766 0.88661 0.92974 0.87563 0.84064 0.83380 0.84420 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.48 71.98 0.68 -2.02 16 2 C 0.13 2.75 3.18 44.99 0.14 2.90 16 3 C -0.15 -2.15 9.38 71.98 0.68 -1.47 16 4 N -0.71 -15.49 5.08 -442.53 -2.25 -17.74 16 5 C 0.49 14.97 7.86 87.66 0.69 15.66 16 6 O -0.58 -24.32 16.09 -3.05 -0.05 -24.37 16 7 C 0.10 2.52 5.89 85.63 0.50 3.03 16 8 N -0.61 -19.67 2.36 -851.13 -2.01 -21.68 16 9 C 0.08 1.83 10.24 127.77 1.31 3.14 16 10 C 0.51 22.72 7.43 87.66 0.65 23.37 16 11 O -0.56 -30.65 14.60 -3.04 -0.04 -30.69 16 12 C -0.11 -4.48 3.49 29.85 0.10 -4.37 16 13 C 0.08 3.94 1.31 -12.29 -0.02 3.92 16 14 H 0.01 0.69 6.23 -2.39 -0.01 0.67 16 15 C -0.55 -33.23 6.40 25.60 0.16 -33.06 16 16 H 0.03 1.57 7.82 -2.91 -0.02 1.55 16 17 C -0.02 -1.28 5.45 84.65 0.46 -0.82 16 18 N -0.94 -61.54 13.63 21.45 0.29 -61.25 16 19 Si 1.10 58.09 29.91 68.60 2.05 60.14 16 20 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 21 H -0.29 -15.53 7.11 99.48 0.71 -14.82 16 22 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 23 C -0.05 -2.55 4.77 -19.87 -0.09 -2.64 16 24 C -0.13 -5.30 8.88 22.27 0.20 -5.10 16 25 C -0.12 -4.25 10.05 22.27 0.22 -4.03 16 26 C -0.14 -4.54 10.05 22.27 0.22 -4.31 16 27 C -0.12 -4.32 10.05 22.27 0.22 -4.09 16 28 C -0.15 -6.52 9.67 22.27 0.22 -6.31 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 1.35 7.58 -2.39 -0.02 1.33 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.42 5.64 8.60 -92.71 -0.80 4.85 16 37 H 0.16 2.18 8.07 -2.39 -0.02 2.16 16 38 H 0.10 2.87 7.42 -2.39 -0.02 2.85 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.55 8.07 -2.38 -0.02 1.53 16 41 H 0.07 1.61 6.44 -2.39 -0.02 1.60 16 42 H 0.08 3.49 7.12 -2.39 -0.02 3.47 16 43 H 0.10 3.39 8.11 -2.39 -0.02 3.37 16 44 H 0.26 17.01 6.68 -92.71 -0.62 16.39 16 45 H 0.11 4.53 7.80 -2.91 -0.02 4.51 16 46 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 47 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 48 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 49 H 0.10 4.35 7.95 -2.91 -0.02 4.33 16 Total: -1.00 -91.09 405.64 4.64 -86.45 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.29 Total: 25.37 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 6.36 Total: -16.23 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -3.96 Total: -100.67 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -0.09 Total: -55.06 kcal Atomic # 14 Polarization: 58.09 SS G_CDS: 2.05 Total: 60.14 kcal Total: -91.09 4.64 -86.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353821734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.087 kcal (2) G-P(sol) polarization free energy of solvation -91.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds