Wall clock time and date at job start Tue Mar 31 2020 17:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47102 * 2 1 4 4 N 1.46500 * 109.47343 * 120.00237 * 2 1 3 5 5 C 1.34775 * 120.00051 * 154.99869 * 4 2 1 6 6 O 1.21289 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00412 * 180.02562 * 5 4 2 8 8 N 1.46493 * 109.47461 * 179.97438 * 7 5 4 9 9 C 1.46501 * 120.00186 * 269.99737 * 8 7 5 10 10 C 1.34776 * 119.99808 * 90.00269 * 8 7 5 11 11 O 1.21277 * 120.00168 * 359.97438 * 10 8 7 12 12 C 1.50703 * 119.99818 * 180.27520 * 10 8 7 13 13 C 1.53003 * 109.47252 * 179.72061 * 12 10 8 14 14 H 1.08997 * 109.47166 * 304.99953 * 13 12 10 15 15 C 1.50704 * 109.46825 * 64.99879 * 13 12 10 16 16 H 1.07999 * 119.99786 * 234.67752 * 15 13 12 17 17 C 1.37868 * 120.00055 * 54.68055 * 15 13 12 18 18 N 1.31521 * 120.00028 * 4.87177 * 17 15 13 19 19 Si 1.86805 * 120.00249 * 184.86788 * 17 15 13 20 20 H 1.48501 * 109.46503 * 60.00163 * 19 17 15 21 21 H 1.48495 * 109.47343 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47117 * 300.00295 * 19 17 15 23 23 C 1.50694 * 109.47339 * 184.99957 * 13 12 10 24 24 C 1.38232 * 120.00065 * 151.48671 * 23 13 12 25 25 C 1.38239 * 119.99732 * 179.78882 * 24 23 13 26 26 C 1.38233 * 120.00363 * 0.43809 * 25 24 23 27 27 C 1.38236 * 119.99857 * 359.81682 * 26 25 24 28 28 C 1.38235 * 120.00033 * 359.97432 * 27 26 25 29 29 H 1.09001 * 109.46719 * 299.99515 * 1 2 3 30 30 H 1.08998 * 109.47234 * 59.99813 * 1 2 3 31 31 H 1.08997 * 109.46771 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47209 * 240.00420 * 2 1 3 33 33 H 1.08998 * 109.47229 * 300.00190 * 3 2 1 34 34 H 1.09001 * 109.46938 * 60.00619 * 3 2 1 35 35 H 1.09006 * 109.46935 * 179.97438 * 3 2 1 36 36 H 0.96997 * 120.00216 * 335.00020 * 4 2 1 37 37 H 1.09001 * 109.47005 * 59.99558 * 7 5 4 38 38 H 1.09000 * 109.46860 * 300.00310 * 7 5 4 39 39 H 1.09002 * 109.47076 * 270.00434 * 9 8 7 40 40 H 1.08999 * 109.46536 * 30.00312 * 9 8 7 41 41 H 1.09003 * 109.47105 * 150.00212 * 9 8 7 42 42 H 1.08997 * 109.47212 * 299.71952 * 12 10 8 43 43 H 1.08995 * 109.47320 * 59.72215 * 12 10 8 44 44 H 0.97002 * 119.99696 * 180.02562 * 18 17 15 45 45 H 1.07994 * 120.00387 * 359.97438 * 24 23 13 46 46 H 1.08006 * 119.99779 * 180.27499 * 25 24 23 47 47 H 1.07997 * 120.00387 * 179.83226 * 26 25 24 48 48 H 1.07997 * 120.00478 * 179.97438 * 27 26 25 49 49 H 1.07996 * 120.00595 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9359 -1.1987 0.2025 7 6 3.7426 -1.9702 2.4245 8 7 5.0853 -2.4977 2.1697 9 6 5.2508 -3.8463 1.6220 10 6 6.1684 -1.7422 2.4394 11 8 6.0314 -0.6257 2.8925 12 6 7.5495 -2.2825 2.1715 13 6 8.5920 -1.2306 2.5556 14 1 8.3799 -0.2998 2.0296 15 6 8.5392 -0.9906 4.0425 16 1 8.4011 0.0105 4.4233 17 6 8.6672 -2.0491 4.9166 18 7 8.9309 -3.2530 4.4574 19 14 8.4662 -1.7734 6.7532 20 1 7.1065 -1.2434 7.0282 21 1 8.6494 -3.0609 7.4700 22 1 9.4822 -0.7967 7.2212 23 6 9.9649 -1.7213 2.1744 24 6 10.9601 -0.8151 1.8597 25 6 12.2207 -1.2652 1.5142 26 6 12.4835 -2.6218 1.4748 27 6 11.4868 -3.5282 1.7845 28 6 10.2275 -3.0780 2.1341 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.4623 -0.7388 1.9894 37 1 3.0699 -2.7923 2.6690 38 1 3.7791 -1.2701 3.2592 39 1 5.3219 -4.5641 2.4391 40 1 4.3928 -4.0920 0.9962 41 1 6.1606 -3.8861 1.0231 42 1 7.7080 -3.1841 2.7632 43 1 7.6472 -2.5211 1.1125 44 1 9.0206 -3.9977 5.0724 45 1 10.7537 0.2446 1.8865 46 1 12.9995 -0.5570 1.2726 47 1 13.4676 -2.9735 1.2023 48 1 11.6919 -4.5880 1.7533 49 1 9.4488 -3.7861 2.3765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353821735.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:58 Heat of formation + Delta-G solvation = -43.540990 kcal Electronic energy + Delta-G solvation = -29277.584159 eV Core-core repulsion = 25397.812830 eV Total energy + Delta-G solvation = -3879.771329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.97851 -38.79738 -37.94619 -36.00316 -34.73280 -34.10708 -31.80615 -31.03433 -29.80185 -29.08953 -27.73708 -27.40300 -26.14706 -25.11263 -22.64441 -21.72268 -21.26327 -20.51902 -19.70707 -18.30746 -17.18778 -16.59898 -16.37795 -16.03941 -15.48917 -15.15916 -14.92622 -14.84777 -14.46682 -14.13608 -13.79747 -13.69590 -13.32650 -13.11582 -12.88629 -12.67402 -12.54019 -12.32876 -12.28656 -12.17416 -12.03573 -11.74272 -11.58449 -11.49732 -11.41585 -11.26964 -11.11487 -10.85611 -10.77628 -10.39191 -10.11605 -9.89545 -9.83537 -9.24239 -9.13194 -9.10668 -8.73629 -8.37949 -8.09111 -7.75238 -7.38706 -5.93110 -4.02751 2.55049 2.63680 2.79122 3.03103 3.34541 3.37011 3.43492 3.66705 3.81771 4.46232 4.63027 4.85133 4.97475 5.03042 5.05069 5.16738 5.29015 5.37597 5.47526 5.49210 5.52264 5.59729 5.70316 5.85918 5.87291 5.91606 5.93890 5.99743 6.06397 6.07967 6.16256 6.45337 6.49460 6.51248 6.66923 6.75430 6.83423 6.91875 7.20087 7.21752 7.31747 7.52522 7.53777 7.59952 7.73524 7.97479 8.05784 8.19117 8.23525 8.35411 8.40247 8.93268 9.20414 9.59793 11.00948 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.003379 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.994099 B = 8284.459995 C = 9168.402912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 C -0.165 4.165 4 N -0.733 5.733 5 C 0.497 3.503 6 O -0.526 6.526 7 C 0.100 3.900 8 N -0.616 5.616 9 C 0.091 3.909 10 C 0.533 3.467 11 O -0.525 6.525 12 C -0.133 4.133 13 C 0.087 3.913 14 H 0.036 0.964 15 C -0.469 4.469 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.279 1.279 23 C -0.026 4.026 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.143 4.143 28 C -0.068 4.068 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.133 0.867 43 H 0.054 0.946 44 H 0.260 0.740 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.477 -1.426 -6.938 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 C -0.223 4.223 4 N -0.388 5.388 5 C 0.282 3.718 6 O -0.400 6.400 7 C -0.028 4.028 8 N -0.352 5.352 9 C -0.052 4.052 10 C 0.324 3.676 11 O -0.399 6.399 12 C -0.173 4.173 13 C 0.068 3.932 14 H 0.055 0.945 15 C -0.507 4.507 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.027 4.027 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.173 4.173 27 C -0.161 4.161 28 C -0.087 4.087 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.150 0.850 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.962 -0.954 -7.327 14.920 hybrid contribution -0.330 0.022 1.591 1.625 sum -13.293 -0.932 -5.736 14.507 Atomic orbital electron populations 1.22066 0.94381 1.02403 1.02787 1.20874 0.93592 0.93151 0.89150 1.22190 1.02599 0.95766 1.01741 1.46148 1.18280 1.57733 1.16609 1.21588 0.80833 0.78599 0.90743 1.90692 1.55456 1.58895 1.34976 1.21109 0.86311 0.99633 0.95768 1.47645 1.04199 1.16562 1.66817 1.21647 1.02501 0.82835 0.98227 1.21182 0.86375 0.84629 0.75380 1.90591 1.86326 1.19666 1.43288 1.21928 0.90204 1.05318 0.99829 1.17646 0.86492 0.92805 0.96272 0.94534 1.20944 1.46136 0.94046 0.89532 0.92391 1.24876 0.95121 0.95362 0.98574 1.69678 1.49456 0.99785 1.34050 0.86659 0.78656 0.77189 0.85592 1.20451 1.21421 1.20422 1.20338 0.97612 0.93010 0.91698 1.20899 0.93352 0.98976 1.01778 1.20793 0.96570 0.95178 1.03438 1.20756 0.98243 0.93635 1.04641 1.21039 0.94638 0.98106 1.02364 1.21355 0.96543 0.96303 0.94460 0.92104 0.91130 0.92103 0.89702 0.91934 0.92537 0.91809 0.76867 0.88467 0.87202 0.92858 0.92408 0.90591 0.84991 0.92795 0.92938 0.87698 0.88126 0.88327 0.88092 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.38 37.16 0.35 -0.70 16 2 C 0.14 1.38 3.18 -67.93 -0.22 1.17 16 3 C -0.16 -1.76 9.48 37.16 0.35 -1.41 16 4 N -0.73 -7.92 5.08 -53.80 -0.27 -8.20 16 5 C 0.50 7.42 7.86 -10.99 -0.09 7.33 16 6 O -0.53 -10.10 16.09 5.55 0.09 -10.01 16 7 C 0.10 1.43 5.89 -5.20 -0.03 1.40 16 8 N -0.62 -10.93 2.36 -182.96 -0.43 -11.36 16 9 C 0.09 1.30 10.25 59.85 0.61 1.91 16 10 C 0.53 11.92 7.42 -10.98 -0.08 11.84 16 11 O -0.52 -13.44 14.56 5.56 0.08 -13.36 16 12 C -0.13 -2.98 2.63 -27.88 -0.07 -3.05 16 13 C 0.09 2.17 1.97 -92.92 -0.18 1.99 16 14 H 0.04 0.95 7.91 -51.93 -0.41 0.54 16 15 C -0.47 -12.79 7.27 -34.44 -0.25 -13.04 16 16 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 17 C 0.06 1.59 5.12 -17.82 -0.09 1.50 16 18 N -0.89 -22.75 7.99 55.43 0.44 -22.31 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 24 C -0.13 -2.92 9.71 -39.58 -0.38 -3.31 16 25 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 26 C -0.15 -2.98 10.05 -39.58 -0.40 -3.38 16 27 C -0.14 -2.91 10.05 -39.58 -0.40 -3.30 16 28 C -0.07 -1.53 7.46 -39.58 -0.30 -1.83 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 1.01 7.58 -51.93 -0.39 0.62 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.40 3.06 8.60 -40.82 -0.35 2.71 16 37 H 0.10 0.99 8.07 -51.93 -0.42 0.57 16 38 H 0.11 1.67 7.42 -51.93 -0.39 1.29 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.08 1.11 6.43 -51.93 -0.33 0.78 16 42 H 0.13 3.06 4.67 -51.93 -0.24 2.82 16 43 H 0.05 1.12 7.40 -51.93 -0.38 0.74 16 44 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 45 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 46 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 47 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 48 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 49 H 0.14 3.17 5.18 -52.49 -0.27 2.89 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -33.06 396.08 -9.01 -42.08 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.81 Total: 7.96 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.06 Total: -7.21 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.26 Total: -41.86 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.37 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.06 -9.01 -42.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353821735.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.465 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds