Wall clock time and date at job start Tue Mar 31 2020 17:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47102 * 2 1 4 4 N 1.46500 * 109.47343 * 120.00237 * 2 1 3 5 5 C 1.34775 * 120.00051 * 154.99869 * 4 2 1 6 6 O 1.21289 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00412 * 180.02562 * 5 4 2 8 8 N 1.46493 * 109.47461 * 179.97438 * 7 5 4 9 9 C 1.46501 * 120.00186 * 269.99737 * 8 7 5 10 10 C 1.34776 * 119.99808 * 90.00269 * 8 7 5 11 11 O 1.21277 * 120.00168 * 359.97438 * 10 8 7 12 12 C 1.50703 * 119.99818 * 180.27520 * 10 8 7 13 13 C 1.53003 * 109.47252 * 179.72061 * 12 10 8 14 14 H 1.08997 * 109.47166 * 304.99953 * 13 12 10 15 15 C 1.50704 * 109.46825 * 64.99879 * 13 12 10 16 16 H 1.07999 * 119.99786 * 234.67752 * 15 13 12 17 17 C 1.37868 * 120.00055 * 54.68055 * 15 13 12 18 18 N 1.31521 * 120.00028 * 4.87177 * 17 15 13 19 19 Si 1.86805 * 120.00249 * 184.86788 * 17 15 13 20 20 H 1.48501 * 109.46503 * 60.00163 * 19 17 15 21 21 H 1.48495 * 109.47343 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47117 * 300.00295 * 19 17 15 23 23 C 1.50694 * 109.47339 * 184.99957 * 13 12 10 24 24 C 1.38232 * 120.00065 * 151.48671 * 23 13 12 25 25 C 1.38239 * 119.99732 * 179.78882 * 24 23 13 26 26 C 1.38233 * 120.00363 * 0.43809 * 25 24 23 27 27 C 1.38236 * 119.99857 * 359.81682 * 26 25 24 28 28 C 1.38235 * 120.00033 * 359.97432 * 27 26 25 29 29 H 1.09001 * 109.46719 * 299.99515 * 1 2 3 30 30 H 1.08998 * 109.47234 * 59.99813 * 1 2 3 31 31 H 1.08997 * 109.46771 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47209 * 240.00420 * 2 1 3 33 33 H 1.08998 * 109.47229 * 300.00190 * 3 2 1 34 34 H 1.09001 * 109.46938 * 60.00619 * 3 2 1 35 35 H 1.09006 * 109.46935 * 179.97438 * 3 2 1 36 36 H 0.96997 * 120.00216 * 335.00020 * 4 2 1 37 37 H 1.09001 * 109.47005 * 59.99558 * 7 5 4 38 38 H 1.09000 * 109.46860 * 300.00310 * 7 5 4 39 39 H 1.09002 * 109.47076 * 270.00434 * 9 8 7 40 40 H 1.08999 * 109.46536 * 30.00312 * 9 8 7 41 41 H 1.09003 * 109.47105 * 150.00212 * 9 8 7 42 42 H 1.08997 * 109.47212 * 299.71952 * 12 10 8 43 43 H 1.08995 * 109.47320 * 59.72215 * 12 10 8 44 44 H 0.97002 * 119.99696 * 180.02562 * 18 17 15 45 45 H 1.07994 * 120.00387 * 359.97438 * 24 23 13 46 46 H 1.08006 * 119.99779 * 180.27499 * 25 24 23 47 47 H 1.07997 * 120.00387 * 179.83226 * 26 25 24 48 48 H 1.07997 * 120.00478 * 179.97438 * 27 26 25 49 49 H 1.07996 * 120.00595 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9359 -1.1987 0.2025 7 6 3.7426 -1.9702 2.4245 8 7 5.0853 -2.4977 2.1697 9 6 5.2508 -3.8463 1.6220 10 6 6.1684 -1.7422 2.4394 11 8 6.0314 -0.6257 2.8925 12 6 7.5495 -2.2825 2.1715 13 6 8.5920 -1.2306 2.5556 14 1 8.3799 -0.2998 2.0296 15 6 8.5392 -0.9906 4.0425 16 1 8.4011 0.0105 4.4233 17 6 8.6672 -2.0491 4.9166 18 7 8.9309 -3.2530 4.4574 19 14 8.4662 -1.7734 6.7532 20 1 7.1065 -1.2434 7.0282 21 1 8.6494 -3.0609 7.4700 22 1 9.4822 -0.7967 7.2212 23 6 9.9649 -1.7213 2.1744 24 6 10.9601 -0.8151 1.8597 25 6 12.2207 -1.2652 1.5142 26 6 12.4835 -2.6218 1.4748 27 6 11.4868 -3.5282 1.7845 28 6 10.2275 -3.0780 2.1341 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.4623 -0.7388 1.9894 37 1 3.0699 -2.7923 2.6690 38 1 3.7791 -1.2701 3.2592 39 1 5.3219 -4.5641 2.4391 40 1 4.3928 -4.0920 0.9962 41 1 6.1606 -3.8861 1.0231 42 1 7.7080 -3.1841 2.7632 43 1 7.6472 -2.5211 1.1125 44 1 9.0206 -3.9977 5.0724 45 1 10.7537 0.2446 1.8865 46 1 12.9995 -0.5570 1.2726 47 1 13.4676 -2.9735 1.2023 48 1 11.6919 -4.5880 1.7533 49 1 9.4488 -3.7861 2.3765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353821735.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:57 Heat of formation + Delta-G solvation = -63.338343 kcal Electronic energy + Delta-G solvation = -29278.442637 eV Core-core repulsion = 25397.812830 eV Total energy + Delta-G solvation = -3880.629807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30584 -40.32666 -39.54781 -37.09056 -36.25337 -35.91178 -33.04483 -32.74221 -31.43915 -30.54399 -29.20063 -28.12720 -27.80996 -26.67106 -24.36444 -23.09701 -22.60189 -21.63550 -21.33231 -19.90645 -18.36528 -18.29777 -17.94315 -17.43529 -17.05044 -16.86001 -16.40511 -16.00175 -15.97490 -15.47355 -15.30590 -15.10553 -14.86657 -14.47367 -14.25515 -13.95414 -13.79341 -13.73816 -13.39842 -13.32800 -13.22288 -13.15878 -13.09677 -13.05437 -12.88521 -12.71675 -12.67237 -12.31616 -12.23629 -11.94773 -11.86835 -11.68497 -11.13141 -11.07183 -11.05459 -10.60377 -10.28995 -10.12536 -9.51997 -9.40664 -9.12093 -7.92393 -6.08945 0.88227 0.99668 1.39513 1.39723 1.48286 1.61178 1.83440 2.12222 2.46651 2.50679 3.20879 3.37238 3.79750 3.93718 4.00598 4.13272 4.29502 4.31016 4.32144 4.33667 4.40712 4.47611 4.52620 4.65698 4.69182 4.72050 4.76936 4.78608 4.88777 4.91526 4.96655 5.00146 5.08092 5.13785 5.23558 5.29738 5.34733 5.52903 5.55409 5.59664 5.66186 5.67734 5.89159 5.93934 6.08598 6.35450 6.41874 6.54562 6.57015 6.57907 6.83900 7.27725 7.51424 7.54081 8.97443 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.003379 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.994099 B = 8284.459995 C = 9168.402912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.133 3.867 3 C -0.162 4.162 4 N -0.715 5.715 5 C 0.495 3.505 6 O -0.577 6.577 7 C 0.095 3.905 8 N -0.614 5.614 9 C 0.086 3.914 10 C 0.524 3.476 11 O -0.572 6.572 12 C -0.120 4.120 13 C 0.089 3.911 14 H 0.003 0.997 15 C -0.494 4.494 16 H 0.026 0.974 17 C 0.036 3.964 18 N -0.884 5.884 19 Si 0.933 3.067 20 H -0.286 1.286 21 H -0.272 1.272 22 H -0.285 1.285 23 C -0.052 4.052 24 C -0.155 4.155 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.081 4.081 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.019 0.981 36 H 0.416 0.584 37 H 0.149 0.851 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.062 0.938 44 H 0.263 0.737 45 H 0.099 0.901 46 H 0.132 0.868 47 H 0.138 0.862 48 H 0.129 0.871 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.194 -3.421 -6.970 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 C -0.220 4.220 4 N -0.369 5.369 5 C 0.281 3.719 6 O -0.456 6.456 7 C -0.032 4.032 8 N -0.348 5.348 9 C -0.056 4.056 10 C 0.315 3.685 11 O -0.450 6.450 12 C -0.160 4.160 13 C 0.070 3.930 14 H 0.022 0.978 15 C -0.532 4.532 16 H 0.044 0.956 17 C -0.163 4.163 18 N -0.523 5.523 19 Si 0.760 3.240 20 H -0.213 1.213 21 H -0.197 1.197 22 H -0.211 1.211 23 C -0.053 4.053 24 C -0.173 4.173 25 C -0.157 4.157 26 C -0.166 4.166 27 C -0.163 4.163 28 C -0.099 4.099 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.253 0.747 37 H 0.167 0.833 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.146 0.854 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.117 0.883 46 H 0.150 0.850 47 H 0.156 0.844 48 H 0.147 0.853 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.745 -2.993 -7.357 15.875 hybrid contribution -0.124 0.661 1.527 1.669 sum -13.869 -2.332 -5.829 15.224 Atomic orbital electron populations 1.21994 0.90876 1.03463 1.04152 1.21004 0.96159 0.92083 0.87897 1.22174 0.99716 0.96826 1.03303 1.46027 1.17087 1.56083 1.17689 1.21674 0.81552 0.78586 0.90101 1.90676 1.57095 1.61055 1.36748 1.21410 0.85388 1.01256 0.95114 1.47606 1.04516 1.17242 1.65395 1.21874 1.03473 0.81162 0.99102 1.21187 0.87569 0.84444 0.75315 1.90558 1.87134 1.21579 1.45705 1.21723 0.90199 1.04037 1.00058 1.17519 0.88506 0.92258 0.94766 0.97819 1.20860 1.48137 0.92996 0.91189 0.95603 1.25235 0.94891 0.95354 1.00855 1.69758 1.48469 0.99549 1.34520 0.86019 0.77796 0.77448 0.82696 1.21262 1.19687 1.21078 1.20316 0.97099 0.94162 0.93718 1.21067 0.94565 0.98739 1.02925 1.21151 0.96055 0.96507 1.02037 1.21208 0.99636 0.93028 1.02709 1.21380 0.93761 0.99947 1.01216 1.21318 0.97683 0.95400 0.95491 0.90669 0.89839 0.91190 0.91797 0.89940 0.91465 0.96145 0.74721 0.83346 0.88254 0.91127 0.89590 0.91459 0.85363 0.91941 0.92659 0.88292 0.85005 0.84410 0.85262 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.38 71.98 0.68 -0.88 16 2 C 0.13 2.58 3.18 44.99 0.14 2.73 16 3 C -0.16 -3.49 9.48 71.98 0.68 -2.80 16 4 N -0.71 -14.76 5.08 -442.52 -2.25 -17.01 16 5 C 0.50 14.81 7.86 87.66 0.69 15.50 16 6 O -0.58 -23.00 16.09 -3.06 -0.05 -23.05 16 7 C 0.09 2.66 5.89 85.63 0.50 3.16 16 8 N -0.61 -21.87 2.36 -851.14 -2.01 -23.88 16 9 C 0.09 2.35 10.25 127.77 1.31 3.66 16 10 C 0.52 24.50 7.42 87.66 0.65 25.15 16 11 O -0.57 -31.20 14.56 -3.02 -0.04 -31.25 16 12 C -0.12 -5.65 2.63 29.85 0.08 -5.57 16 13 C 0.09 4.70 1.97 -12.29 -0.02 4.68 16 14 H 0.00 0.19 7.91 -2.39 -0.02 0.17 16 15 C -0.49 -28.44 7.27 25.60 0.19 -28.26 16 16 H 0.03 1.59 7.82 -2.91 -0.02 1.57 16 17 C 0.04 1.96 5.12 84.65 0.43 2.39 16 18 N -0.88 -45.31 7.99 21.44 0.17 -45.14 16 19 Si 0.93 44.50 29.54 68.60 2.03 46.53 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 23 C -0.05 -2.56 4.69 -19.87 -0.09 -2.65 16 24 C -0.15 -7.01 9.71 22.27 0.22 -6.79 16 25 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16 26 C -0.15 -5.24 10.05 22.27 0.22 -5.02 16 27 C -0.14 -5.56 10.05 22.27 0.22 -5.33 16 28 C -0.08 -3.61 7.46 22.27 0.17 -3.44 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.54 7.58 -2.38 -0.02 1.52 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.42 5.52 8.60 -92.71 -0.80 4.73 16 37 H 0.15 2.56 8.07 -2.39 -0.02 2.54 16 38 H 0.10 3.05 7.42 -2.39 -0.02 3.03 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 1.87 8.07 -2.39 -0.02 1.85 16 41 H 0.07 1.96 6.43 -2.39 -0.02 1.94 16 42 H 0.13 6.10 4.67 -2.39 -0.01 6.09 16 43 H 0.06 2.74 7.40 -2.39 -0.02 2.72 16 44 H 0.26 12.95 8.31 -92.71 -0.77 12.18 16 45 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 46 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 47 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 48 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 49 H 0.13 6.00 5.18 -2.91 -0.02 5.98 16 Total: -1.00 -76.82 396.08 4.28 -72.54 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.15 Total: 29.82 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 6.29 Total: -8.56 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -4.09 Total: -86.03 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -0.09 Total: -54.30 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -76.82 4.28 -72.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353821735.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.201 kcal (2) G-P(sol) polarization free energy of solvation -76.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds