Wall clock time and date at job start Tue Mar 31 2020 16:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46893 * 2 1 4 4 N 1.46504 * 109.47161 * 185.81134 * 3 2 1 5 5 C 1.36870 * 120.00389 * 278.22513 * 4 3 2 6 6 H 1.07992 * 120.00542 * 140.42858 * 5 4 3 7 7 C 1.39057 * 119.99620 * 320.43350 * 5 4 3 8 8 N 1.31362 * 119.99767 * 165.69614 * 7 5 4 9 9 Si 1.86800 * 119.99735 * 345.69257 * 7 5 4 10 10 H 1.48498 * 109.47136 * 89.52041 * 9 7 5 11 11 H 1.48504 * 109.46801 * 209.51672 * 9 7 5 12 12 H 1.48494 * 109.47224 * 329.51930 * 9 7 5 13 13 C 1.34783 * 120.00067 * 98.22043 * 4 3 2 14 14 O 1.21585 * 120.00026 * 186.36501 * 13 4 3 15 15 C 1.47729 * 119.99709 * 6.36822 * 13 4 3 16 16 C 1.39663 * 120.15015 * 134.85128 * 15 13 4 17 17 C 1.37916 * 119.84433 * 180.02562 * 16 15 13 18 18 C 1.38391 * 120.15166 * 359.97438 * 17 16 15 19 19 C 1.38357 * 120.30799 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.92391 * 179.97438 * 19 18 17 21 21 N 1.46905 * 109.46902 * 89.99931 * 20 19 18 22 22 C 1.47017 * 111.00010 * 169.99973 * 21 20 19 23 23 C 1.53098 * 109.25650 * 177.61151 * 22 21 20 24 24 O 1.43016 * 109.29610 * 56.82701 * 23 22 21 25 25 C 1.43013 * 113.73641 * 301.39818 * 24 23 22 26 26 C 1.47018 * 110.99859 * 46.36423 * 21 20 19 27 27 C 1.37955 * 120.15024 * 0.25621 * 19 18 17 28 28 H 1.09000 * 109.47872 * 59.99754 * 1 2 3 29 29 H 1.09006 * 109.47231 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47382 * 299.99845 * 1 2 3 31 31 H 1.09000 * 109.47382 * 240.00155 * 2 1 3 32 32 H 1.08994 * 109.47635 * 119.99848 * 2 1 3 33 33 H 1.08997 * 109.47459 * 65.81442 * 3 2 1 34 34 H 1.09000 * 109.47205 * 305.81376 * 3 2 1 35 35 H 0.96999 * 119.99325 * 180.02562 * 8 7 5 36 36 H 1.07994 * 120.07482 * 359.97438 * 16 15 13 37 37 H 1.07999 * 119.91878 * 179.97438 * 17 16 15 38 38 H 1.08007 * 119.84620 * 180.02562 * 18 17 16 39 39 H 1.09003 * 109.47324 * 330.00541 * 20 19 18 40 40 H 1.08995 * 109.47052 * 209.99860 * 20 19 18 41 41 H 1.08995 * 109.50671 * 57.67499 * 22 21 20 42 42 H 1.09007 * 109.50206 * 297.54396 * 22 21 20 43 43 H 1.09001 * 109.50072 * 176.78121 * 23 22 21 44 44 H 1.08993 * 109.50370 * 296.86872 * 23 22 21 45 45 H 1.09004 * 109.47002 * 298.66813 * 25 24 23 46 46 H 1.08997 * 109.54614 * 178.57719 * 25 24 23 47 47 H 1.08998 * 109.50831 * 302.32785 * 26 21 20 48 48 H 1.09006 * 109.50439 * 62.41616 * 26 21 20 49 49 H 1.07996 * 120.07719 * 179.72845 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4982 1.4450 -0.1399 5 6 4.2912 1.2371 0.9561 6 1 5.1825 0.6332 0.8711 7 6 3.9492 1.8033 2.1793 8 7 4.5325 1.3889 3.2809 9 14 2.6603 3.1533 2.2556 10 1 1.3168 2.5456 2.4310 11 1 2.9511 4.0509 3.4023 12 1 2.6885 3.9364 0.9943 13 6 4.0591 1.6519 -1.3479 14 8 5.2617 1.5396 -1.4871 15 6 3.2125 2.0152 -2.5027 16 6 3.6008 3.0471 -3.3601 17 6 2.8053 3.3814 -4.4360 18 6 1.6252 2.6966 -4.6673 19 6 1.2350 1.6726 -3.8227 20 6 -0.0521 0.9331 -4.0824 21 7 0.2123 -0.2181 -4.9558 22 6 -0.9637 -1.0963 -5.0405 23 6 -0.6658 -2.2476 -6.0047 24 8 0.5006 -2.9460 -5.5607 25 6 1.6648 -2.1207 -5.4664 26 6 1.3906 -0.9681 -4.4967 27 6 2.0187 1.3309 -2.7399 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.7641 1.9255 0.9374 34 1 1.5940 1.9855 -0.8333 35 1 4.2935 1.7837 4.1341 36 1 4.5213 3.5825 -3.1804 37 1 3.1042 4.1794 -5.0995 38 1 1.0062 2.9623 -5.5117 39 1 -0.7636 1.6013 -4.5675 40 1 -0.4677 0.5841 -3.1371 41 1 -1.8177 -0.5266 -5.4066 42 1 -1.1898 -1.4981 -4.0527 43 1 -1.5136 -2.9323 -6.0269 44 1 -0.4931 -1.8495 -7.0045 45 1 1.9059 -1.7188 -6.4505 46 1 2.5030 -2.7131 -5.0997 47 1 2.2549 -0.3048 -4.4660 48 1 1.2023 -1.3672 -3.5000 49 1 1.7108 0.5344 -2.0789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354195183.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:20 Heat of formation + Delta-G solvation = -22.398690 kcal Electronic energy + Delta-G solvation = -30323.396750 eV Core-core repulsion = 26444.542220 eV Total energy + Delta-G solvation = -3878.854530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.33833 -39.44058 -37.97259 -35.98196 -35.60032 -33.05010 -31.86623 -31.67370 -31.18632 -30.74775 -27.97757 -26.09671 -25.39920 -24.47682 -24.15828 -22.84291 -21.58122 -21.32641 -20.54417 -18.94582 -17.07548 -16.85037 -16.64409 -16.54912 -16.15358 -15.68579 -15.50281 -15.24902 -15.13609 -14.55979 -14.44943 -14.30284 -14.09550 -13.65983 -13.42940 -13.16632 -12.96541 -12.63766 -12.44548 -12.34903 -12.21047 -12.12107 -11.95277 -11.74571 -11.57200 -11.54510 -11.28483 -11.01470 -10.93682 -10.75478 -10.70535 -10.55286 -10.12462 -9.86404 -9.83402 -9.14348 -8.78529 -8.72881 -8.47799 -8.41552 -7.82174 -6.44278 -4.05891 1.31693 1.46169 2.95953 3.15518 3.18639 3.42376 3.65600 3.76609 4.06444 4.10521 4.34873 4.56389 4.72506 4.80854 4.83942 4.91892 4.96382 5.05659 5.08724 5.17657 5.23654 5.29933 5.35151 5.35723 5.40783 5.44784 5.50015 5.58099 5.60230 5.64268 5.70286 5.77349 5.79580 5.82119 5.96028 6.05961 6.07750 6.17560 6.21882 6.43247 6.52569 6.60779 6.66942 6.74387 6.76371 6.79436 6.96337 7.09084 7.49998 8.21371 8.43856 8.86601 9.22770 9.67527 10.67139 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.004106 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.882196 B = 6817.156789 C = 7423.752141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.079 3.921 4 N -0.455 5.455 5 C -0.312 4.312 6 H 0.108 0.892 7 C 0.061 3.939 8 N -0.864 5.864 9 Si 0.884 3.116 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.501 3.499 14 O -0.558 6.558 15 C -0.101 4.101 16 C -0.076 4.076 17 C -0.127 4.127 18 C -0.096 4.096 19 C -0.099 4.099 20 C 0.097 3.903 21 N -0.530 5.530 22 C 0.016 3.984 23 C 0.065 3.935 24 O -0.387 6.387 25 C 0.064 3.936 26 C 0.012 3.988 27 C -0.109 4.109 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.275 0.725 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.045 0.955 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.648 -1.462 -16.127 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C -0.044 4.044 4 N -0.175 5.175 5 C -0.439 4.439 6 H 0.126 0.874 7 C -0.145 4.145 8 N -0.500 5.500 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.289 3.711 14 O -0.439 6.439 15 C -0.104 4.104 16 C -0.095 4.095 17 C -0.145 4.145 18 C -0.115 4.115 19 C -0.099 4.099 20 C -0.030 4.030 21 N -0.255 5.255 22 C -0.112 4.112 23 C -0.012 4.012 24 O -0.305 6.305 25 C -0.013 4.013 26 C -0.116 4.116 27 C -0.127 4.127 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.114 0.886 48 H 0.063 0.937 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.895 -1.541 -16.359 21.519 hybrid contribution -0.912 0.832 1.106 1.657 sum -14.807 -0.709 -15.254 21.270 Atomic orbital electron populations 1.21778 0.96062 1.01473 1.01588 1.21937 0.94859 0.97710 1.03162 1.22186 0.83474 0.96960 1.01824 1.43638 1.03967 1.62468 1.07454 1.19079 1.08804 1.30964 0.85039 0.87404 1.25382 0.97393 0.96564 0.95148 1.69651 1.42041 1.40143 0.98185 0.86892 0.80824 0.82714 0.78293 1.19904 1.21540 1.19002 1.18237 0.87406 0.82101 0.83313 1.90662 1.14661 1.54517 1.84100 1.20357 0.95451 0.97540 0.97054 1.21212 0.99194 0.95793 0.93328 1.21038 0.95085 1.00440 0.97898 1.21006 0.96583 0.95427 0.98456 1.19546 0.96775 0.97679 0.95917 1.21079 0.94620 0.91865 0.95437 1.62374 1.04089 1.08397 1.50617 1.22812 0.93758 0.94883 0.99792 1.22625 0.88515 0.93406 0.96702 1.87989 1.18386 1.36068 1.88066 1.22697 0.87980 0.91640 0.98943 1.22930 0.95003 0.96180 0.97499 1.21868 0.93615 1.00088 0.97179 0.93182 0.92617 0.92531 0.91896 0.90076 0.91799 0.90632 0.91422 0.85452 0.85854 0.86129 0.89685 0.93601 0.89672 0.93763 0.88634 0.92381 0.92318 0.88305 0.88606 0.93704 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.86 37.15 0.37 -1.67 16 2 C -0.14 -2.39 5.25 -26.73 -0.14 -2.53 16 3 C 0.08 1.59 3.89 -4.04 -0.02 1.57 16 4 N -0.46 -11.07 2.20 -115.92 -0.26 -11.32 16 5 C -0.31 -8.76 9.36 -15.00 -0.14 -8.90 16 6 H 0.11 3.41 7.89 -52.49 -0.41 3.00 16 7 C 0.06 1.68 5.42 -17.45 -0.09 1.59 16 8 N -0.86 -24.78 13.95 55.50 0.77 -24.01 16 9 Si 0.88 20.67 24.83 -169.99 -4.22 16.45 16 10 H -0.27 -5.86 6.60 56.52 0.37 -5.48 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 C 0.50 12.01 7.23 -12.38 -0.09 11.92 16 14 O -0.56 -15.46 16.86 5.29 0.09 -15.38 16 15 C -0.10 -1.90 5.12 -104.97 -0.54 -2.44 16 16 C -0.08 -1.27 9.69 -39.17 -0.38 -1.65 16 17 C -0.13 -1.67 10.03 -39.64 -0.40 -2.06 16 18 C -0.10 -1.17 9.69 -39.48 -0.38 -1.55 16 19 C -0.10 -1.28 4.13 -104.68 -0.43 -1.71 16 20 C 0.10 1.03 5.43 -4.97 -0.03 1.01 16 21 N -0.53 -5.70 4.87 -235.74 -1.15 -6.85 16 22 C 0.02 0.14 5.63 -3.71 -0.02 0.12 16 23 C 0.06 0.58 7.01 37.21 0.26 0.84 16 24 O -0.39 -4.54 10.83 -35.23 -0.38 -4.93 16 25 C 0.06 0.71 7.01 37.21 0.26 0.97 16 26 C 0.01 0.14 4.66 -3.71 -0.02 0.12 16 27 C -0.11 -1.71 5.21 -39.17 -0.20 -1.91 16 28 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.06 6.30 -51.93 -0.33 0.73 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 33 H 0.06 1.37 2.41 -51.93 -0.13 1.25 16 34 H 0.08 1.38 4.96 -51.93 -0.26 1.12 16 35 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 39 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.04 0.43 8.14 -51.92 -0.42 0.00 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.10 1.30 5.93 -51.93 -0.31 0.99 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.14 2.17 3.61 -52.49 -0.19 1.98 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -32.12 377.08 -8.93 -41.05 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.48 Total: 5.59 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.99 Total: -6.30 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.63 Total: -42.17 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.29 Total: -20.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.22 Total: 16.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.12 -8.93 -41.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354195183.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.656 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds