Wall clock time and date at job start Tue Mar 31 2020 16:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46893 * 2 1 4 4 N 1.46504 * 109.47161 * 185.81134 * 3 2 1 5 5 C 1.36870 * 120.00389 * 278.22513 * 4 3 2 6 6 H 1.07992 * 120.00542 * 140.42858 * 5 4 3 7 7 C 1.39057 * 119.99620 * 320.43350 * 5 4 3 8 8 N 1.31362 * 119.99767 * 165.69614 * 7 5 4 9 9 Si 1.86800 * 119.99735 * 345.69257 * 7 5 4 10 10 H 1.48498 * 109.47136 * 89.52041 * 9 7 5 11 11 H 1.48504 * 109.46801 * 209.51672 * 9 7 5 12 12 H 1.48494 * 109.47224 * 329.51930 * 9 7 5 13 13 C 1.34783 * 120.00067 * 98.22043 * 4 3 2 14 14 O 1.21585 * 120.00026 * 186.36501 * 13 4 3 15 15 C 1.47729 * 119.99709 * 6.36822 * 13 4 3 16 16 C 1.39663 * 120.15015 * 134.85128 * 15 13 4 17 17 C 1.37916 * 119.84433 * 180.02562 * 16 15 13 18 18 C 1.38391 * 120.15166 * 359.97438 * 17 16 15 19 19 C 1.38357 * 120.30799 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.92391 * 179.97438 * 19 18 17 21 21 N 1.46905 * 109.46902 * 89.99931 * 20 19 18 22 22 C 1.47017 * 111.00010 * 169.99973 * 21 20 19 23 23 C 1.53098 * 109.25650 * 177.61151 * 22 21 20 24 24 O 1.43016 * 109.29610 * 56.82701 * 23 22 21 25 25 C 1.43013 * 113.73641 * 301.39818 * 24 23 22 26 26 C 1.47018 * 110.99859 * 46.36423 * 21 20 19 27 27 C 1.37955 * 120.15024 * 0.25621 * 19 18 17 28 28 H 1.09000 * 109.47872 * 59.99754 * 1 2 3 29 29 H 1.09006 * 109.47231 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47382 * 299.99845 * 1 2 3 31 31 H 1.09000 * 109.47382 * 240.00155 * 2 1 3 32 32 H 1.08994 * 109.47635 * 119.99848 * 2 1 3 33 33 H 1.08997 * 109.47459 * 65.81442 * 3 2 1 34 34 H 1.09000 * 109.47205 * 305.81376 * 3 2 1 35 35 H 0.96999 * 119.99325 * 180.02562 * 8 7 5 36 36 H 1.07994 * 120.07482 * 359.97438 * 16 15 13 37 37 H 1.07999 * 119.91878 * 179.97438 * 17 16 15 38 38 H 1.08007 * 119.84620 * 180.02562 * 18 17 16 39 39 H 1.09003 * 109.47324 * 330.00541 * 20 19 18 40 40 H 1.08995 * 109.47052 * 209.99860 * 20 19 18 41 41 H 1.08995 * 109.50671 * 57.67499 * 22 21 20 42 42 H 1.09007 * 109.50206 * 297.54396 * 22 21 20 43 43 H 1.09001 * 109.50072 * 176.78121 * 23 22 21 44 44 H 1.08993 * 109.50370 * 296.86872 * 23 22 21 45 45 H 1.09004 * 109.47002 * 298.66813 * 25 24 23 46 46 H 1.08997 * 109.54614 * 178.57719 * 25 24 23 47 47 H 1.08998 * 109.50831 * 302.32785 * 26 21 20 48 48 H 1.09006 * 109.50439 * 62.41616 * 26 21 20 49 49 H 1.07996 * 120.07719 * 179.72845 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4982 1.4450 -0.1399 5 6 4.2912 1.2371 0.9561 6 1 5.1825 0.6332 0.8711 7 6 3.9492 1.8033 2.1793 8 7 4.5325 1.3889 3.2809 9 14 2.6603 3.1533 2.2556 10 1 1.3168 2.5456 2.4310 11 1 2.9511 4.0509 3.4023 12 1 2.6885 3.9364 0.9943 13 6 4.0591 1.6519 -1.3479 14 8 5.2617 1.5396 -1.4871 15 6 3.2125 2.0152 -2.5027 16 6 3.6008 3.0471 -3.3601 17 6 2.8053 3.3814 -4.4360 18 6 1.6252 2.6966 -4.6673 19 6 1.2350 1.6726 -3.8227 20 6 -0.0521 0.9331 -4.0824 21 7 0.2123 -0.2181 -4.9558 22 6 -0.9637 -1.0963 -5.0405 23 6 -0.6658 -2.2476 -6.0047 24 8 0.5006 -2.9460 -5.5607 25 6 1.6648 -2.1207 -5.4664 26 6 1.3906 -0.9681 -4.4967 27 6 2.0187 1.3309 -2.7399 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.7641 1.9255 0.9374 34 1 1.5940 1.9855 -0.8333 35 1 4.2935 1.7837 4.1341 36 1 4.5213 3.5825 -3.1804 37 1 3.1042 4.1794 -5.0995 38 1 1.0062 2.9623 -5.5117 39 1 -0.7636 1.6013 -4.5675 40 1 -0.4677 0.5841 -3.1371 41 1 -1.8177 -0.5266 -5.4066 42 1 -1.1898 -1.4981 -4.0527 43 1 -1.5136 -2.9323 -6.0269 44 1 -0.4931 -1.8495 -7.0045 45 1 1.9059 -1.7188 -6.4505 46 1 2.5030 -2.7131 -5.0997 47 1 2.2549 -0.3048 -4.4660 48 1 1.2023 -1.3672 -3.5000 49 1 1.7108 0.5344 -2.0789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354195183.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:19 Heat of formation + Delta-G solvation = -45.005952 kcal Electronic energy + Delta-G solvation = -30324.377075 eV Core-core repulsion = 26444.542220 eV Total energy + Delta-G solvation = -3879.834855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.64341 -40.55450 -39.31756 -37.59257 -36.71473 -34.87858 -33.51699 -32.76986 -32.24896 -31.87848 -28.87618 -27.72411 -27.15578 -25.38256 -25.00705 -24.22140 -22.97978 -22.55053 -21.41958 -20.48100 -19.06745 -18.20023 -18.11953 -17.54590 -17.22627 -17.04125 -16.61628 -16.28159 -15.99419 -15.95270 -15.81777 -15.57270 -15.25055 -15.03822 -14.88171 -14.48520 -14.25610 -14.13390 -13.93586 -13.65828 -13.45932 -13.27823 -13.10397 -13.03577 -12.74854 -12.56718 -12.45733 -12.32988 -12.22049 -12.11893 -11.98801 -11.80465 -11.59914 -11.51056 -11.06130 -10.64882 -10.57062 -9.89216 -9.78145 -9.77859 -9.31872 -8.57684 -6.26403 0.07353 0.32933 1.09139 1.23235 1.34277 1.86164 2.08415 2.50790 2.66552 2.84046 2.93108 3.08810 3.58767 3.70567 3.80720 3.90131 3.96112 4.01659 4.08137 4.08574 4.19566 4.25613 4.29456 4.33059 4.38762 4.42500 4.44946 4.50905 4.62201 4.63387 4.72867 4.75156 4.84667 4.86042 4.90417 4.94509 5.02616 5.03694 5.07897 5.16036 5.31789 5.39507 5.47264 5.53580 5.56713 5.88704 5.93416 5.95186 6.02428 6.20105 6.46236 6.80004 7.15484 7.71162 8.59016 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.004106 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.882196 B = 6817.156789 C = 7423.752141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.078 3.922 4 N -0.465 5.465 5 C -0.332 4.332 6 H 0.046 0.954 7 C 0.017 3.983 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.233 1.233 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.495 3.505 14 O -0.615 6.615 15 C -0.133 4.133 16 C -0.094 4.094 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.089 4.089 20 C 0.097 3.903 21 N -0.529 5.529 22 C 0.017 3.983 23 C 0.058 3.942 24 O -0.407 6.407 25 C 0.066 3.934 26 C 0.016 3.984 27 C -0.107 4.107 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.282 0.718 36 H 0.111 0.889 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.116 0.884 40 H 0.050 0.950 41 H 0.113 0.887 42 H 0.038 0.962 43 H 0.116 0.884 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.029 0.971 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.921 0.139 -19.187 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.044 4.044 4 N -0.185 5.185 5 C -0.460 4.460 6 H 0.064 0.936 7 C -0.186 4.186 8 N -0.547 5.547 9 Si 0.774 3.226 10 H -0.158 1.158 11 H -0.211 1.211 12 H -0.189 1.189 13 C 0.286 3.714 14 O -0.500 6.500 15 C -0.136 4.136 16 C -0.113 4.113 17 C -0.132 4.132 18 C -0.094 4.094 19 C -0.090 4.090 20 C -0.030 4.030 21 N -0.254 5.254 22 C -0.111 4.111 23 C -0.018 4.018 24 O -0.326 6.326 25 C -0.011 4.011 26 C -0.112 4.112 27 C -0.126 4.126 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.134 0.866 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.057 0.943 43 H 0.134 0.866 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.048 0.952 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.216 0.040 -19.423 27.322 hybrid contribution 0.784 0.257 1.882 2.055 sum -18.432 0.297 -17.541 25.447 Atomic orbital electron populations 1.21739 0.92186 1.03183 1.02895 1.21879 0.98082 0.95476 1.01737 1.22409 0.80695 0.99032 1.02267 1.43721 1.05612 1.62662 1.06507 1.18640 1.08334 1.31675 0.87344 0.93635 1.26132 1.00020 0.98429 0.93982 1.69772 1.44269 1.41629 0.98996 0.85849 0.79565 0.79034 0.78189 1.15803 1.21121 1.18916 1.19165 0.87459 0.80203 0.84564 1.90600 1.17533 1.56589 1.85319 1.19960 0.96686 1.00458 0.96472 1.21270 0.99653 0.95744 0.94628 1.21371 0.94545 1.00813 0.96434 1.21504 0.95897 0.93550 0.98469 1.19825 0.97114 0.97602 0.94429 1.21203 0.93487 0.92057 0.96229 1.62428 1.04226 1.08572 1.50155 1.22906 0.93692 0.94883 0.99631 1.22867 0.88077 0.93921 0.96942 1.87967 1.19253 1.37017 1.88342 1.22661 0.88108 0.91373 0.99000 1.22798 0.95209 0.96190 0.97053 1.21795 0.92715 0.99591 0.98471 0.90821 0.90802 0.92186 0.91994 0.93057 0.92624 0.88048 0.90801 0.87066 0.82392 0.82020 0.86571 0.93177 0.86899 0.94336 0.86636 0.91701 0.91664 0.88627 0.90496 0.95227 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.86 71.98 0.71 -2.69 16 2 C -0.13 -4.61 5.25 30.59 0.16 -4.45 16 3 C 0.08 3.12 3.89 86.38 0.34 3.45 16 4 N -0.47 -23.92 2.20 -638.93 -1.41 -25.33 16 5 C -0.33 -20.25 9.36 84.10 0.79 -19.46 16 6 H 0.05 3.25 7.89 -2.91 -0.02 3.23 16 7 C 0.02 0.98 5.42 84.96 0.46 1.44 16 8 N -0.91 -55.08 13.95 21.68 0.30 -54.78 16 9 Si 0.95 43.06 24.83 68.60 1.70 44.76 16 10 H -0.23 -9.10 6.60 99.48 0.66 -8.45 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.50 25.36 7.23 86.75 0.63 25.99 16 14 O -0.61 -37.29 16.86 -3.98 -0.07 -37.36 16 15 C -0.13 -5.09 5.12 -20.09 -0.10 -5.19 16 16 C -0.09 -3.09 9.69 22.54 0.22 -2.87 16 17 C -0.11 -2.58 10.03 22.23 0.22 -2.35 16 18 C -0.08 -1.44 9.69 22.33 0.22 -1.22 16 19 C -0.09 -1.95 4.13 -19.90 -0.08 -2.03 16 20 C 0.10 1.55 5.43 85.56 0.46 2.02 16 21 N -0.53 -9.20 4.87 -899.73 -4.38 -13.58 16 22 C 0.02 0.23 5.63 86.31 0.49 0.71 16 23 C 0.06 0.84 7.01 72.01 0.50 1.34 16 24 O -0.41 -8.79 10.83 -148.98 -1.61 -10.40 16 25 C 0.07 1.37 7.01 72.02 0.50 1.88 16 26 C 0.02 0.36 4.66 86.31 0.40 0.76 16 27 C -0.11 -3.20 5.21 22.54 0.12 -3.08 16 28 H 0.07 1.42 7.56 -2.39 -0.02 1.41 16 29 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 2.12 6.30 -2.39 -0.02 2.11 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.31 2.41 -2.39 -0.01 2.31 16 34 H 0.10 3.52 4.96 -2.39 -0.01 3.51 16 35 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.12 1.25 8.08 -2.39 -0.02 1.23 16 40 H 0.05 0.80 7.45 -2.39 -0.02 0.78 16 41 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.08 2.01 5.93 -2.39 -0.01 2.00 16 48 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 49 H 0.13 4.08 3.61 -2.91 -0.01 4.07 16 Total: -1.00 -79.42 377.08 1.47 -77.95 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.90 Total: 24.51 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 6.03 Total: -5.77 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -5.49 Total: -93.69 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -1.68 Total: -47.77 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.70 Total: 44.76 kcal Total: -79.42 1.47 -77.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354195183.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.942 kcal (2) G-P(sol) polarization free energy of solvation -79.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds