Wall clock time and date at job start Tue Mar 31 2020 17:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 N 1.46499 * 109.47223 * 120.00720 * 2 1 3 5 5 C 1.34774 * 120.00189 * 84.99863 * 4 2 1 6 6 O 1.21277 * 120.00075 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99799 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47066 * 179.97438 * 7 5 4 9 9 N 1.46503 * 109.47206 * 180.02562 * 8 7 5 10 10 C 1.34774 * 119.99939 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00090 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.52994 * 109.46995 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47363 * 54.05802 * 13 12 10 15 15 C 1.50705 * 109.47281 * 294.05789 * 13 12 10 16 16 H 1.07999 * 119.99468 * 330.08103 * 15 13 12 17 17 C 1.37873 * 120.00025 * 150.08844 * 15 13 12 18 18 N 1.31511 * 120.00099 * 6.55948 * 17 15 13 19 19 Si 1.86805 * 119.99647 * 186.56809 * 17 15 13 20 20 H 1.48498 * 109.47129 * 269.99471 * 19 17 15 21 21 H 1.48498 * 109.47291 * 29.99590 * 19 17 15 22 22 H 1.48503 * 109.46813 * 149.99580 * 19 17 15 23 23 C 1.50704 * 109.47072 * 174.05777 * 13 12 10 24 24 C 1.38232 * 120.00156 * 64.29986 * 23 13 12 25 25 C 1.38227 * 120.00423 * 179.81276 * 24 23 13 26 26 C 1.38243 * 119.99751 * 0.39675 * 25 24 23 27 27 C 1.38236 * 119.99618 * 359.85625 * 26 25 24 28 28 C 1.38229 * 120.00074 * 359.95579 * 27 26 25 29 29 H 1.08996 * 109.47441 * 59.99220 * 1 2 3 30 30 H 1.09001 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47155 * 299.99849 * 1 2 3 32 32 H 1.09008 * 109.46530 * 240.00572 * 2 1 3 33 33 H 1.09002 * 109.47374 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47424 * 300.00198 * 3 2 1 35 35 H 1.08998 * 109.47018 * 60.00867 * 3 2 1 36 36 H 0.97001 * 119.99177 * 264.99426 * 4 2 1 37 37 H 1.08999 * 109.47202 * 60.00122 * 7 5 4 38 38 H 1.09001 * 109.47665 * 299.99948 * 7 5 4 39 39 H 1.08997 * 109.47176 * 59.99628 * 8 7 5 40 40 H 1.09002 * 109.47082 * 299.99756 * 8 7 5 41 41 H 0.97001 * 120.00018 * 359.97438 * 9 8 7 42 42 H 1.08999 * 109.46642 * 59.99829 * 12 10 9 43 43 H 1.09002 * 109.46876 * 299.99722 * 12 10 9 44 44 H 0.96995 * 120.00371 * 354.73583 * 18 17 15 45 45 H 1.08007 * 119.99790 * 359.97438 * 24 23 13 46 46 H 1.08004 * 120.00499 * 180.23296 * 25 24 23 47 47 H 1.08002 * 119.99679 * 179.83680 * 26 25 24 48 48 H 1.08002 * 119.99754 * 179.97438 * 27 26 25 49 49 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -2.0323 1.1942 6 8 1.8582 -2.6678 0.2024 7 6 2.6500 -2.7427 2.4244 8 6 2.7007 -4.2486 2.1587 9 7 3.1890 -4.9394 3.3549 10 6 3.3176 -6.2809 3.3530 11 8 3.0287 -6.9165 2.3612 12 6 3.8205 -6.9914 4.5832 13 6 3.8711 -8.4973 4.3176 14 1 4.4580 -8.6882 3.4191 15 6 2.4712 -9.0206 4.1238 16 1 1.6422 -8.5431 4.6249 17 6 2.2489 -10.1088 3.3069 18 7 3.2669 -10.7693 2.8000 19 14 0.5018 -10.6447 2.9200 20 1 0.0493 -11.6287 3.9360 21 1 -0.3955 -9.4617 2.9427 22 1 0.4625 -11.2700 1.5736 23 6 4.5095 -9.1934 5.4919 24 6 3.8926 -9.1691 6.7287 25 6 4.4761 -9.8108 7.8050 26 6 5.6809 -10.4700 7.6464 27 6 6.3004 -10.4898 6.4108 28 6 5.7149 -9.8513 5.3337 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 2.2491 -0.1824 1.9893 37 1 1.9778 -2.5439 3.2591 38 1 3.6493 -2.3827 2.6689 39 1 3.3726 -4.4479 1.3239 40 1 1.7012 -4.6084 1.9145 41 1 3.4205 -4.4310 4.1479 42 1 3.1484 -6.7924 5.4179 43 1 4.8199 -6.6314 4.8277 44 1 4.1713 -10.4469 2.9376 45 1 2.9532 -8.6509 6.8535 46 1 3.9923 -9.7950 8.7704 47 1 6.1382 -10.9691 8.4880 48 1 7.2419 -11.0044 6.2870 49 1 6.1987 -9.8672 4.3683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354309892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:34 Heat of formation + Delta-G solvation = -70.449993 kcal Electronic energy + Delta-G solvation = -27693.139240 eV Core-core repulsion = 23812.201049 eV Total energy + Delta-G solvation = -3880.938191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.13697 -39.08951 -38.24870 -36.38543 -34.90661 -34.05507 -32.19462 -31.35370 -30.40479 -30.09146 -28.71051 -27.62376 -25.35801 -23.87096 -22.70549 -21.66774 -21.44884 -20.68367 -20.27374 -19.46177 -17.32807 -16.93513 -16.49989 -16.22270 -15.96289 -15.73387 -15.19792 -14.92071 -14.50323 -14.23382 -14.12767 -13.81005 -13.65035 -13.58439 -13.15961 -13.01399 -12.74291 -12.68928 -12.53445 -12.37223 -12.27526 -11.85899 -11.81031 -11.78235 -11.60021 -11.36898 -11.31287 -10.85475 -10.66021 -10.40918 -10.12384 -10.06442 -10.00113 -9.62454 -9.41437 -8.99128 -8.63236 -8.54360 -8.21829 -8.12415 -7.60980 -6.19036 -3.86566 2.20666 2.26495 2.43390 2.79121 3.51288 3.54442 3.61534 3.73559 3.74488 4.39989 4.56545 4.63823 4.64021 4.70115 4.82663 4.86566 4.90908 5.16010 5.22552 5.30718 5.37883 5.46996 5.52610 5.60954 5.64916 5.69861 5.71663 5.77859 5.89241 5.93630 6.02112 6.12030 6.14214 6.19075 6.24709 6.33222 6.44197 6.71330 6.80998 6.87818 6.95189 7.19211 7.22685 7.24417 7.40470 7.74855 7.87712 7.99783 8.05304 8.26549 8.55198 9.01505 9.06969 9.82737 11.21476 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.002377 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.325891 B =11776.011063 C =13091.933376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 C -0.160 4.160 4 N -0.731 5.731 5 C 0.517 3.483 6 O -0.529 6.529 7 C -0.152 4.152 8 C 0.137 3.863 9 N -0.752 5.752 10 C 0.512 3.488 11 O -0.495 6.495 12 C -0.116 4.116 13 C 0.071 3.929 14 H 0.051 0.949 15 C -0.568 4.568 16 H 0.045 0.955 17 C 0.032 3.968 18 N -0.906 5.906 19 Si 1.066 2.934 20 H -0.292 1.292 21 H -0.290 1.290 22 H -0.285 1.285 23 C -0.030 4.030 24 C -0.108 4.108 25 C -0.130 4.130 26 C -0.153 4.153 27 C -0.124 4.124 28 C -0.130 4.130 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.391 0.609 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.270 0.730 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.177 23.188 3.712 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.384 5.384 5 C 0.303 3.697 6 O -0.405 6.405 7 C -0.192 4.192 8 C 0.013 3.987 9 N -0.408 5.408 10 C 0.298 3.702 11 O -0.366 6.366 12 C -0.156 4.156 13 C 0.052 3.948 14 H 0.069 0.931 15 C -0.605 4.605 16 H 0.064 0.936 17 C -0.174 4.174 18 N -0.542 5.542 19 Si 0.896 3.104 20 H -0.219 1.219 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.031 4.031 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.172 4.172 27 C -0.142 4.142 28 C -0.148 4.148 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.224 0.776 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.148 21.042 1.409 21.089 hybrid contribution 0.991 1.694 1.676 2.581 sum 0.843 22.736 3.086 22.960 Atomic orbital electron populations 1.22193 0.95236 1.02869 1.01999 1.20941 0.94264 0.92763 0.89043 1.22073 1.01706 0.95054 1.02920 1.46135 1.68425 1.07053 1.16829 1.20526 0.77395 0.82119 0.89660 1.90769 1.48932 1.65723 1.35027 1.21831 1.03523 0.96809 0.97031 1.20853 1.01292 0.88028 0.88557 1.46159 1.70924 1.07844 1.15920 1.20860 0.77801 0.80718 0.90790 1.90769 1.46156 1.64962 1.34679 1.21680 0.99759 0.99028 0.95167 1.17874 0.97932 0.87452 0.91525 0.93084 1.21546 0.90438 1.17774 1.30743 0.93639 1.25584 1.05055 0.93577 0.93168 1.70724 1.00099 1.38026 1.45310 0.83594 0.74764 0.75450 0.76631 1.21887 1.21627 1.21080 1.20836 0.91338 0.95329 0.95596 1.20912 0.99209 1.00035 0.92466 1.21008 0.96096 0.99281 0.98391 1.20820 0.96898 1.02431 0.97014 1.20963 0.99648 1.00180 0.93456 1.21069 0.96123 0.99586 0.98036 0.91657 0.91884 0.92529 0.89381 0.91967 0.90928 0.92083 0.76686 0.88282 0.88335 0.91190 0.91039 0.77602 0.90302 0.91694 0.91848 0.86746 0.87479 0.87617 0.87485 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.13 0.99 3.18 -67.93 -0.22 0.77 16 3 C -0.16 -0.72 9.38 37.16 0.35 -0.38 16 4 N -0.73 -5.36 5.08 -53.81 -0.27 -5.63 16 5 C 0.52 5.62 7.79 -10.99 -0.09 5.53 16 6 O -0.53 -8.37 15.64 5.56 0.09 -8.29 16 7 C -0.15 -1.35 5.81 -27.88 -0.16 -1.51 16 8 C 0.14 1.97 4.96 -4.04 -0.02 1.95 16 9 N -0.75 -10.99 5.56 -60.29 -0.33 -11.33 16 10 C 0.51 10.37 7.58 -10.98 -0.08 10.29 16 11 O -0.49 -12.84 15.02 5.55 0.08 -12.76 16 12 C -0.12 -2.25 4.94 -27.88 -0.14 -2.38 16 13 C 0.07 1.72 1.31 -92.92 -0.12 1.60 16 14 H 0.05 1.40 6.23 -51.93 -0.32 1.07 16 15 C -0.57 -15.68 6.40 -34.44 -0.22 -15.90 16 16 H 0.05 1.26 7.82 -52.49 -0.41 0.85 16 17 C 0.03 0.93 5.45 -17.82 -0.10 0.84 16 18 N -0.91 -28.18 13.63 55.43 0.76 -27.42 16 19 Si 1.07 27.04 29.91 -169.99 -5.08 21.96 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 C -0.03 -0.68 4.77 -104.62 -0.50 -1.17 16 24 C -0.11 -2.21 8.88 -39.59 -0.35 -2.56 16 25 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 26 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 27 C -0.12 -2.30 10.05 -39.59 -0.40 -2.69 16 28 C -0.13 -2.74 9.67 -39.59 -0.38 -3.12 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.09 0.84 7.58 -51.92 -0.39 0.45 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.40 1.68 8.60 -40.82 -0.35 1.32 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.39 4.10 8.47 -40.82 -0.35 3.76 16 42 H 0.08 1.41 7.86 -51.93 -0.41 1.00 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.27 8.29 6.68 -40.82 -0.27 8.02 16 45 H 0.11 2.27 7.80 -52.48 -0.41 1.86 16 46 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 47 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 48 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 LS Contribution 408.57 15.07 6.16 6.16 Total: -1.00 -37.44 408.57 -9.52 -46.96 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.04 Total: 5.75 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.87 Total: -15.40 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.15 Total: -44.38 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.17 Total: -21.05 kcal Atomic # 14 Polarization: 27.04 SS G_CDS: -5.08 Total: 21.96 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.44 -9.52 -46.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354309892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.491 kcal (2) G-P(sol) polarization free energy of solvation -37.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds