Wall clock time and date at job start Tue Mar 31 2020 17:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 N 1.46499 * 109.47223 * 120.00720 * 2 1 3 5 5 C 1.34774 * 120.00189 * 84.99863 * 4 2 1 6 6 O 1.21277 * 120.00075 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99799 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47066 * 179.97438 * 7 5 4 9 9 N 1.46503 * 109.47206 * 180.02562 * 8 7 5 10 10 C 1.34774 * 119.99939 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00090 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.52994 * 109.46995 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47363 * 54.05802 * 13 12 10 15 15 C 1.50705 * 109.47281 * 294.05789 * 13 12 10 16 16 H 1.07999 * 119.99468 * 330.08103 * 15 13 12 17 17 C 1.37873 * 120.00025 * 150.08844 * 15 13 12 18 18 N 1.31511 * 120.00099 * 6.55948 * 17 15 13 19 19 Si 1.86805 * 119.99647 * 186.56809 * 17 15 13 20 20 H 1.48498 * 109.47129 * 269.99471 * 19 17 15 21 21 H 1.48498 * 109.47291 * 29.99590 * 19 17 15 22 22 H 1.48503 * 109.46813 * 149.99580 * 19 17 15 23 23 C 1.50704 * 109.47072 * 174.05777 * 13 12 10 24 24 C 1.38232 * 120.00156 * 64.29986 * 23 13 12 25 25 C 1.38227 * 120.00423 * 179.81276 * 24 23 13 26 26 C 1.38243 * 119.99751 * 0.39675 * 25 24 23 27 27 C 1.38236 * 119.99618 * 359.85625 * 26 25 24 28 28 C 1.38229 * 120.00074 * 359.95579 * 27 26 25 29 29 H 1.08996 * 109.47441 * 59.99220 * 1 2 3 30 30 H 1.09001 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47155 * 299.99849 * 1 2 3 32 32 H 1.09008 * 109.46530 * 240.00572 * 2 1 3 33 33 H 1.09002 * 109.47374 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47424 * 300.00198 * 3 2 1 35 35 H 1.08998 * 109.47018 * 60.00867 * 3 2 1 36 36 H 0.97001 * 119.99177 * 264.99426 * 4 2 1 37 37 H 1.08999 * 109.47202 * 60.00122 * 7 5 4 38 38 H 1.09001 * 109.47665 * 299.99948 * 7 5 4 39 39 H 1.08997 * 109.47176 * 59.99628 * 8 7 5 40 40 H 1.09002 * 109.47082 * 299.99756 * 8 7 5 41 41 H 0.97001 * 120.00018 * 359.97438 * 9 8 7 42 42 H 1.08999 * 109.46642 * 59.99829 * 12 10 9 43 43 H 1.09002 * 109.46876 * 299.99722 * 12 10 9 44 44 H 0.96995 * 120.00371 * 354.73583 * 18 17 15 45 45 H 1.08007 * 119.99790 * 359.97438 * 24 23 13 46 46 H 1.08004 * 120.00499 * 180.23296 * 25 24 23 47 47 H 1.08002 * 119.99679 * 179.83680 * 26 25 24 48 48 H 1.08002 * 119.99754 * 179.97438 * 27 26 25 49 49 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -2.0323 1.1942 6 8 1.8582 -2.6678 0.2024 7 6 2.6500 -2.7427 2.4244 8 6 2.7007 -4.2486 2.1587 9 7 3.1890 -4.9394 3.3549 10 6 3.3176 -6.2809 3.3530 11 8 3.0287 -6.9165 2.3612 12 6 3.8205 -6.9914 4.5832 13 6 3.8711 -8.4973 4.3176 14 1 4.4580 -8.6882 3.4191 15 6 2.4712 -9.0206 4.1238 16 1 1.6422 -8.5431 4.6249 17 6 2.2489 -10.1088 3.3069 18 7 3.2669 -10.7693 2.8000 19 14 0.5018 -10.6447 2.9200 20 1 0.0493 -11.6287 3.9360 21 1 -0.3955 -9.4617 2.9427 22 1 0.4625 -11.2700 1.5736 23 6 4.5095 -9.1934 5.4919 24 6 3.8926 -9.1691 6.7287 25 6 4.4761 -9.8108 7.8050 26 6 5.6809 -10.4700 7.6464 27 6 6.3004 -10.4898 6.4108 28 6 5.7149 -9.8513 5.3337 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 2.2491 -0.1824 1.9893 37 1 1.9778 -2.5439 3.2591 38 1 3.6493 -2.3827 2.6689 39 1 3.3726 -4.4479 1.3239 40 1 1.7012 -4.6084 1.9145 41 1 3.4205 -4.4310 4.1479 42 1 3.1484 -6.7924 5.4179 43 1 4.8199 -6.6314 4.8277 44 1 4.1713 -10.4469 2.9376 45 1 2.9532 -8.6509 6.8535 46 1 3.9923 -9.7950 8.7704 47 1 6.1382 -10.9691 8.4880 48 1 7.2419 -11.0044 6.2870 49 1 6.1987 -9.8672 4.3683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354309892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:33 Heat of formation + Delta-G solvation = -97.258488 kcal Electronic energy + Delta-G solvation = -27694.301743 eV Core-core repulsion = 23812.201049 eV Total energy + Delta-G solvation = -3882.100695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.09624 -40.62600 -39.77745 -37.16876 -36.38213 -35.78938 -33.39024 -32.96992 -31.60852 -31.51042 -30.14233 -28.11494 -27.13250 -25.37182 -24.23702 -23.17737 -22.19503 -21.87810 -21.52070 -21.05559 -18.82161 -18.29470 -17.90355 -17.31764 -17.11679 -16.86286 -16.60775 -16.25226 -15.75293 -15.66588 -15.60619 -15.24640 -14.85902 -14.77140 -14.51473 -14.35385 -14.02237 -13.94467 -13.79349 -13.43990 -13.24664 -13.15397 -13.07675 -12.85330 -12.73526 -12.61890 -12.40740 -12.31312 -12.07510 -11.96594 -11.93238 -11.70974 -11.47732 -11.04154 -10.73324 -10.62581 -10.31427 -10.16349 -10.00607 -9.62547 -9.25840 -8.45224 -6.10777 0.69404 0.75405 1.45297 1.58459 1.59222 1.71047 1.89559 1.95374 2.55986 2.59934 3.11991 3.38735 3.61400 3.87817 4.03853 4.06817 4.13297 4.14646 4.15835 4.29719 4.30833 4.31515 4.45765 4.49815 4.51072 4.64621 4.72079 4.74227 4.83365 4.84443 4.87759 4.92121 4.94952 5.02540 5.14265 5.24851 5.25069 5.30835 5.42355 5.44127 5.53471 5.54710 5.76162 5.84086 5.95306 6.25094 6.31852 6.40519 6.54362 6.74658 6.79442 7.26056 7.54598 7.64944 8.95235 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.002377 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.325891 B =11776.011063 C =13091.933376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.129 3.871 3 C -0.150 4.150 4 N -0.711 5.711 5 C 0.512 3.488 6 O -0.591 6.591 7 C -0.134 4.134 8 C 0.139 3.861 9 N -0.722 5.722 10 C 0.507 3.493 11 O -0.565 6.565 12 C -0.109 4.109 13 C 0.072 3.928 14 H 0.004 0.996 15 C -0.556 4.556 16 H 0.040 0.960 17 C -0.028 4.028 18 N -0.944 5.944 19 Si 1.101 2.899 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.293 1.293 23 C -0.055 4.055 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.144 4.144 27 C -0.125 4.125 28 C -0.153 4.153 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.419 0.581 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.418 0.582 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.258 0.742 45 H 0.116 0.884 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.134 0.866 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 25.737 7.791 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 C -0.208 4.208 4 N -0.364 5.364 5 C 0.299 3.701 6 O -0.471 6.471 7 C -0.174 4.174 8 C 0.014 3.986 9 N -0.378 5.378 10 C 0.295 3.705 11 O -0.441 6.441 12 C -0.149 4.149 13 C 0.052 3.948 14 H 0.023 0.977 15 C -0.594 4.594 16 H 0.059 0.941 17 C -0.226 4.226 18 N -0.582 5.582 19 Si 0.926 3.074 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.220 1.220 23 C -0.055 4.055 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.162 4.162 27 C -0.143 4.143 28 C -0.172 4.172 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.257 0.743 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.255 0.745 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.134 0.866 46 H 0.162 0.838 47 H 0.164 0.836 48 H 0.152 0.848 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.211 23.711 5.589 24.362 hybrid contribution 0.955 1.021 0.474 1.476 sum 1.166 24.732 6.063 25.491 Atomic orbital electron populations 1.22161 0.95208 1.01086 1.03470 1.21017 0.94324 0.94294 0.87942 1.22009 1.01821 0.92677 1.04254 1.45985 1.66785 1.05977 1.17650 1.20904 0.76754 0.83091 0.89388 1.90760 1.51863 1.67190 1.37317 1.21739 1.06592 0.92024 0.97005 1.20749 0.98459 0.91854 0.87518 1.45773 1.68809 1.06194 1.17024 1.21134 0.77009 0.82295 0.90090 1.90753 1.49495 1.66911 1.36989 1.21577 1.02112 0.95920 0.95254 1.17711 0.95459 0.90710 0.90896 0.97741 1.21835 0.92160 1.16377 1.29020 0.94127 1.26733 1.07336 0.94770 0.93758 1.70812 0.99974 1.39494 1.47951 0.83144 0.71865 0.75889 0.76523 1.19574 1.20688 1.21982 1.20597 0.92575 0.96632 0.95725 1.21005 0.99433 1.01061 0.92462 1.21412 0.96076 0.97631 0.99016 1.21309 0.96315 1.01068 0.97528 1.21287 1.00579 0.99336 0.93117 1.21114 0.96601 1.00909 0.98538 0.90497 0.95204 0.90786 0.92317 0.91681 0.90150 0.90201 0.74292 0.84754 0.84485 0.94125 0.94499 0.74455 0.88091 0.88506 0.93159 0.86622 0.83837 0.83563 0.84829 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.48 71.98 0.68 -1.61 16 2 C 0.13 1.80 3.18 44.99 0.14 1.94 16 3 C -0.15 -0.99 9.38 71.98 0.68 -0.32 16 4 N -0.71 -9.19 5.08 -442.54 -2.25 -11.44 16 5 C 0.51 10.91 7.79 87.66 0.68 11.59 16 6 O -0.59 -19.96 15.64 -3.02 -0.05 -20.01 16 7 C -0.13 -2.08 5.81 29.85 0.17 -1.91 16 8 C 0.14 4.08 4.96 86.38 0.43 4.50 16 9 N -0.72 -20.50 5.56 -463.05 -2.57 -23.07 16 10 C 0.51 21.05 7.58 87.66 0.66 21.71 16 11 O -0.56 -31.26 15.02 -3.04 -0.05 -31.31 16 12 C -0.11 -4.19 4.94 29.85 0.15 -4.05 16 13 C 0.07 3.59 1.31 -12.29 -0.02 3.57 16 14 H 0.00 0.26 6.23 -2.39 -0.01 0.24 16 15 C -0.56 -31.75 6.40 25.60 0.16 -31.59 16 16 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 17 C -0.03 -1.70 5.45 84.65 0.46 -1.24 16 18 N -0.94 -61.98 13.63 21.45 0.29 -61.68 16 19 Si 1.10 56.23 29.91 68.60 2.05 58.28 16 20 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.29 -15.26 7.11 99.48 0.71 -14.56 16 23 C -0.05 -2.46 4.77 -19.87 -0.09 -2.55 16 24 C -0.12 -4.76 8.88 22.27 0.20 -4.56 16 25 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 26 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 27 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 28 C -0.15 -6.56 9.67 22.27 0.22 -6.35 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 1.18 7.58 -2.38 -0.02 1.17 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.26 8.14 -2.39 -0.02 0.25 16 36 H 0.42 2.04 8.60 -92.71 -0.80 1.24 16 37 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 40 H 0.04 1.35 8.10 -2.39 -0.02 1.33 16 41 H 0.42 7.44 8.47 -92.71 -0.79 6.66 16 42 H 0.10 3.44 7.86 -2.39 -0.02 3.42 16 43 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.26 17.02 6.68 -92.71 -0.62 16.40 16 45 H 0.12 4.40 7.80 -2.91 -0.02 4.37 16 46 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 47 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 48 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 49 H 0.09 4.16 7.95 -2.91 -0.02 4.14 16 Total: -1.00 -91.82 408.57 2.14 -89.68 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -0.49 Total: 22.52 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.20 Total: -22.97 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -4.53 Total: -96.19 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -0.09 Total: -51.31 kcal Atomic # 14 Polarization: 56.23 SS G_CDS: 2.05 Total: 58.28 kcal Total: -91.82 2.14 -89.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354309892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.582 kcal (2) G-P(sol) polarization free energy of solvation -91.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds