Wall clock time and date at job start Tue Mar 31 2020 17:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47562 * 2 1 4 4 N 1.46502 * 109.47080 * 120.00396 * 2 1 3 5 5 C 1.34778 * 120.00325 * 84.99851 * 4 2 1 6 6 O 1.21279 * 119.99742 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99792 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46839 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.46864 * 179.97438 * 8 7 5 10 10 C 1.34777 * 119.99559 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00046 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99686 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.46990 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.46934 * 305.97546 * 13 12 10 15 15 C 1.50700 * 109.47299 * 65.97885 * 13 12 10 16 16 H 1.08008 * 119.99531 * 26.90748 * 15 13 12 17 17 C 1.37869 * 120.00160 * 206.90965 * 15 13 12 18 18 N 1.31508 * 120.00032 * 353.27812 * 17 15 13 19 19 Si 1.86806 * 120.00073 * 173.54969 * 17 15 13 20 20 H 1.48497 * 109.46895 * 179.72442 * 19 17 15 21 21 H 1.48495 * 109.46957 * 299.72695 * 19 17 15 22 22 H 1.48501 * 109.46761 * 59.72686 * 19 17 15 23 23 C 1.50705 * 109.47056 * 185.97689 * 13 12 10 24 24 C 1.38237 * 120.00118 * 294.44966 * 23 13 12 25 25 C 1.38237 * 119.99818 * 179.78603 * 24 23 13 26 26 C 1.38236 * 120.00003 * 0.44191 * 25 24 23 27 27 C 1.38236 * 119.99991 * 359.81061 * 26 25 24 28 28 C 1.38228 * 119.99825 * 114.71859 * 23 13 12 29 29 H 1.09003 * 109.46822 * 60.00194 * 1 2 3 30 30 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47165 * 300.00174 * 1 2 3 32 32 H 1.09001 * 109.47165 * 239.99826 * 2 1 3 33 33 H 1.08997 * 109.47231 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46881 * 300.00316 * 3 2 1 35 35 H 1.09001 * 109.47023 * 59.99739 * 3 2 1 36 36 H 0.96998 * 119.99612 * 264.99582 * 4 2 1 37 37 H 1.08998 * 109.47269 * 59.99933 * 7 5 4 38 38 H 1.09005 * 109.46959 * 299.99625 * 7 5 4 39 39 H 1.08998 * 109.47146 * 59.99979 * 8 7 5 40 40 H 1.08995 * 109.46642 * 299.99606 * 8 7 5 41 41 H 0.97002 * 120.00062 * 0.02562 * 9 8 7 42 42 H 1.09000 * 109.47229 * 60.00363 * 12 10 9 43 43 H 1.09003 * 109.47630 * 300.00294 * 12 10 9 44 44 H 0.97008 * 120.00303 * 354.69126 * 18 17 15 45 45 H 1.08005 * 119.99967 * 359.97438 * 24 23 13 46 46 H 1.07999 * 119.99448 * 180.27078 * 25 24 23 47 47 H 1.07997 * 119.99991 * 179.83259 * 26 25 24 48 48 H 1.07993 * 119.99965 * 180.02562 * 27 26 25 49 49 H 1.07999 * 120.00249 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -2.0323 1.1943 6 8 1.8581 -2.6678 0.2026 7 6 2.6488 -2.7427 2.4250 8 6 2.6998 -4.2487 2.1593 9 7 3.1882 -4.9393 3.3555 10 6 3.3160 -6.2810 3.3540 11 8 3.0271 -6.9165 2.3622 12 6 3.8178 -6.9914 4.5846 13 6 3.8689 -8.4974 4.3189 14 1 2.8938 -8.8382 3.9711 15 6 4.9072 -8.7867 3.2657 16 1 5.7468 -8.1195 3.1375 17 6 4.7854 -9.9031 2.4659 18 7 3.8397 -10.7846 2.7068 19 14 5.9685 -10.1675 1.0446 20 1 5.6313 -11.4355 0.3493 21 1 5.8570 -9.0350 0.0906 22 1 7.3576 -10.2421 1.5643 23 6 4.2291 -9.2200 5.5914 24 6 5.4755 -9.0377 6.1607 25 6 5.8043 -9.6971 7.3303 26 6 4.8900 -10.5460 7.9256 27 6 3.6455 -10.7324 7.3534 28 6 3.3152 -10.0695 6.1861 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.2491 -0.1824 1.9894 37 1 1.9759 -2.5439 3.2591 38 1 3.6480 -2.3827 2.6704 39 1 3.3725 -4.4479 1.3251 40 1 1.7005 -4.6083 1.9143 41 1 3.4188 -4.4310 4.1488 42 1 3.1453 -6.7920 5.4189 43 1 4.8173 -6.6320 4.8296 44 1 3.2771 -10.6902 3.4915 45 1 6.1914 -8.3776 5.6934 46 1 6.7765 -9.5512 7.7774 47 1 5.1479 -11.0634 8.8379 48 1 2.9311 -11.3953 7.8187 49 1 2.3429 -10.2151 5.7392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354309893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:37 Heat of formation + Delta-G solvation = -71.010661 kcal Electronic energy + Delta-G solvation = -27685.540638 eV Core-core repulsion = 23804.578135 eV Total energy + Delta-G solvation = -3880.962503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.13708 -39.09343 -38.25547 -36.38620 -34.90489 -34.05996 -32.19548 -31.34858 -30.40152 -30.09374 -28.72690 -27.62786 -25.36621 -23.87033 -22.70533 -21.66311 -21.45078 -20.68426 -20.26805 -19.45131 -17.32856 -16.93891 -16.53796 -16.16519 -16.00849 -15.74185 -15.22979 -14.81975 -14.60539 -14.23454 -14.07101 -13.82978 -13.65357 -13.58547 -13.17335 -12.98949 -12.73086 -12.71131 -12.53292 -12.38063 -12.26562 -11.86088 -11.81221 -11.78374 -11.59349 -11.36118 -11.32382 -10.84109 -10.67389 -10.41508 -10.10952 -10.06340 -9.99581 -9.65140 -9.41531 -9.00099 -8.61880 -8.55005 -8.23730 -8.12500 -7.61698 -6.18176 -3.87078 2.20434 2.25964 2.43334 2.79019 3.51494 3.54442 3.61059 3.73449 3.75955 4.39894 4.56396 4.63619 4.63978 4.71508 4.82615 4.86536 4.90812 5.15550 5.22379 5.30474 5.37260 5.45739 5.52810 5.60829 5.64893 5.69012 5.71468 5.77699 5.88136 5.93543 6.01945 6.11743 6.14045 6.18922 6.24628 6.33250 6.43976 6.70915 6.80688 6.87620 6.94701 7.19152 7.22885 7.24822 7.40073 7.75561 7.87437 7.99736 8.04978 8.26554 8.55611 9.00700 9.06737 9.81762 11.21367 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.002353 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.338875 B =11895.227540 C =13110.386951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 C -0.160 4.160 4 N -0.731 5.731 5 C 0.517 3.483 6 O -0.529 6.529 7 C -0.152 4.152 8 C 0.137 3.863 9 N -0.752 5.752 10 C 0.511 3.489 11 O -0.494 6.494 12 C -0.115 4.115 13 C 0.072 3.928 14 H 0.050 0.950 15 C -0.567 4.567 16 H 0.045 0.955 17 C 0.032 3.968 18 N -0.906 5.906 19 Si 1.060 2.940 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.291 1.291 23 C -0.033 4.033 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.153 4.153 27 C -0.125 4.125 28 C -0.130 4.130 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.391 0.609 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.271 0.729 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 22.838 5.070 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.384 5.384 5 C 0.303 3.697 6 O -0.404 6.404 7 C -0.192 4.192 8 C 0.013 3.987 9 N -0.409 5.409 10 C 0.298 3.702 11 O -0.365 6.365 12 C -0.155 4.155 13 C 0.053 3.947 14 H 0.068 0.932 15 C -0.605 4.605 16 H 0.063 0.937 17 C -0.174 4.174 18 N -0.541 5.541 19 Si 0.889 3.111 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.218 1.218 23 C -0.033 4.033 24 C -0.124 4.124 25 C -0.148 4.148 26 C -0.171 4.171 27 C -0.143 4.143 28 C -0.148 4.148 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.224 0.776 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.838 20.846 2.269 21.161 hybrid contribution 0.002 1.559 2.107 2.621 sum -2.836 22.405 4.376 23.004 Atomic orbital electron populations 1.22191 0.95259 1.02825 1.01990 1.20943 0.94237 0.92784 0.89061 1.22073 1.01742 0.95039 1.02907 1.46136 1.68428 1.07053 1.16826 1.20529 0.77381 0.82125 0.89669 1.90770 1.48923 1.65735 1.35021 1.21832 1.03573 0.96820 0.96966 1.20854 1.01146 0.88017 0.88715 1.46159 1.70940 1.07871 1.15882 1.20859 0.77698 0.80831 0.90833 1.90774 1.46098 1.65191 1.34430 1.21656 1.00731 0.99185 0.93970 1.17868 0.99502 0.87424 0.89904 0.93235 1.21524 1.09410 1.11365 1.18184 0.93679 1.25577 0.98593 0.92744 1.00458 1.70733 1.18789 1.35888 1.28707 0.83691 0.74934 0.76228 0.76262 1.20940 1.21430 1.21763 1.20865 0.92756 0.95340 0.94375 1.20924 0.96613 1.00219 0.94677 1.21013 0.98633 0.98369 0.96833 1.20821 0.94776 1.00998 1.00483 1.20964 0.96629 1.00015 0.96679 1.21078 0.99627 0.98533 0.95581 0.91655 0.91918 0.92542 0.89365 0.91940 0.90929 0.92091 0.76687 0.88342 0.88271 0.91023 0.91199 0.77598 0.91653 0.90274 0.91807 0.86687 0.87475 0.87610 0.87470 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 2 C 0.13 0.99 3.18 -67.93 -0.22 0.77 16 3 C -0.16 -0.73 9.38 37.16 0.35 -0.38 16 4 N -0.73 -5.35 5.08 -53.80 -0.27 -5.62 16 5 C 0.52 5.61 7.79 -10.99 -0.09 5.53 16 6 O -0.53 -8.37 15.65 5.56 0.09 -8.29 16 7 C -0.15 -1.34 5.81 -27.88 -0.16 -1.50 16 8 C 0.14 1.97 4.96 -4.04 -0.02 1.95 16 9 N -0.75 -10.98 5.56 -60.29 -0.33 -11.31 16 10 C 0.51 10.36 7.58 -10.99 -0.08 10.28 16 11 O -0.49 -12.86 15.02 5.55 0.08 -12.77 16 12 C -0.12 -2.23 4.95 -27.88 -0.14 -2.37 16 13 C 0.07 1.75 1.23 -92.92 -0.11 1.63 16 14 H 0.05 1.36 6.59 -51.93 -0.34 1.02 16 15 C -0.57 -15.69 6.35 -34.44 -0.22 -15.91 16 16 H 0.04 1.25 7.82 -52.48 -0.41 0.84 16 17 C 0.03 0.94 5.45 -17.83 -0.10 0.84 16 18 N -0.91 -28.20 13.56 55.43 0.75 -27.45 16 19 Si 1.06 26.88 29.91 -169.99 -5.08 21.80 16 20 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C -0.03 -0.73 4.53 -104.62 -0.47 -1.20 16 24 C -0.11 -2.17 8.90 -39.58 -0.35 -2.53 16 25 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 26 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 27 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 28 C -0.13 -2.73 9.18 -39.58 -0.36 -3.10 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.85 7.58 -51.93 -0.39 0.45 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.40 1.67 8.60 -40.82 -0.35 1.32 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 41 H 0.39 4.09 8.47 -40.82 -0.35 3.75 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.41 7.96 -51.93 -0.41 1.00 16 44 H 0.27 8.27 6.24 -40.82 -0.25 8.02 16 45 H 0.12 2.30 7.85 -52.48 -0.41 1.89 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 LS Contribution 407.74 15.07 6.14 6.14 Total: -1.00 -37.57 407.74 -9.49 -47.07 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.05 Total: 5.77 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.82 Total: -15.33 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.14 Total: -44.39 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.17 Total: -21.06 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -5.08 Total: 21.80 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.57 -9.49 -47.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354309893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.942 kcal (2) G-P(sol) polarization free energy of solvation -37.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds