Wall clock time and date at job start Tue Mar 31 2020 17:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47562 * 2 1 4 4 N 1.46502 * 109.47080 * 120.00396 * 2 1 3 5 5 C 1.34778 * 120.00325 * 84.99851 * 4 2 1 6 6 O 1.21279 * 119.99742 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99792 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46839 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.46864 * 179.97438 * 8 7 5 10 10 C 1.34777 * 119.99559 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00046 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99686 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.46990 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.46934 * 305.97546 * 13 12 10 15 15 C 1.50700 * 109.47299 * 65.97885 * 13 12 10 16 16 H 1.08008 * 119.99531 * 26.90748 * 15 13 12 17 17 C 1.37869 * 120.00160 * 206.90965 * 15 13 12 18 18 N 1.31508 * 120.00032 * 353.27812 * 17 15 13 19 19 Si 1.86806 * 120.00073 * 173.54969 * 17 15 13 20 20 H 1.48497 * 109.46895 * 179.72442 * 19 17 15 21 21 H 1.48495 * 109.46957 * 299.72695 * 19 17 15 22 22 H 1.48501 * 109.46761 * 59.72686 * 19 17 15 23 23 C 1.50705 * 109.47056 * 185.97689 * 13 12 10 24 24 C 1.38237 * 120.00118 * 294.44966 * 23 13 12 25 25 C 1.38237 * 119.99818 * 179.78603 * 24 23 13 26 26 C 1.38236 * 120.00003 * 0.44191 * 25 24 23 27 27 C 1.38236 * 119.99991 * 359.81061 * 26 25 24 28 28 C 1.38228 * 119.99825 * 114.71859 * 23 13 12 29 29 H 1.09003 * 109.46822 * 60.00194 * 1 2 3 30 30 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47165 * 300.00174 * 1 2 3 32 32 H 1.09001 * 109.47165 * 239.99826 * 2 1 3 33 33 H 1.08997 * 109.47231 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46881 * 300.00316 * 3 2 1 35 35 H 1.09001 * 109.47023 * 59.99739 * 3 2 1 36 36 H 0.96998 * 119.99612 * 264.99582 * 4 2 1 37 37 H 1.08998 * 109.47269 * 59.99933 * 7 5 4 38 38 H 1.09005 * 109.46959 * 299.99625 * 7 5 4 39 39 H 1.08998 * 109.47146 * 59.99979 * 8 7 5 40 40 H 1.08995 * 109.46642 * 299.99606 * 8 7 5 41 41 H 0.97002 * 120.00062 * 0.02562 * 9 8 7 42 42 H 1.09000 * 109.47229 * 60.00363 * 12 10 9 43 43 H 1.09003 * 109.47630 * 300.00294 * 12 10 9 44 44 H 0.97008 * 120.00303 * 354.69126 * 18 17 15 45 45 H 1.08005 * 119.99967 * 359.97438 * 24 23 13 46 46 H 1.07999 * 119.99448 * 180.27078 * 25 24 23 47 47 H 1.07997 * 119.99991 * 179.83259 * 26 25 24 48 48 H 1.07993 * 119.99965 * 180.02562 * 27 26 25 49 49 H 1.07999 * 120.00249 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -2.0323 1.1943 6 8 1.8581 -2.6678 0.2026 7 6 2.6488 -2.7427 2.4250 8 6 2.6998 -4.2487 2.1593 9 7 3.1882 -4.9393 3.3555 10 6 3.3160 -6.2810 3.3540 11 8 3.0271 -6.9165 2.3622 12 6 3.8178 -6.9914 4.5846 13 6 3.8689 -8.4974 4.3189 14 1 2.8938 -8.8382 3.9711 15 6 4.9072 -8.7867 3.2657 16 1 5.7468 -8.1195 3.1375 17 6 4.7854 -9.9031 2.4659 18 7 3.8397 -10.7846 2.7068 19 14 5.9685 -10.1675 1.0446 20 1 5.6313 -11.4355 0.3493 21 1 5.8570 -9.0350 0.0906 22 1 7.3576 -10.2421 1.5643 23 6 4.2291 -9.2200 5.5914 24 6 5.4755 -9.0377 6.1607 25 6 5.8043 -9.6971 7.3303 26 6 4.8900 -10.5460 7.9256 27 6 3.6455 -10.7324 7.3534 28 6 3.3152 -10.0695 6.1861 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.2491 -0.1824 1.9894 37 1 1.9759 -2.5439 3.2591 38 1 3.6480 -2.3827 2.6704 39 1 3.3725 -4.4479 1.3251 40 1 1.7005 -4.6083 1.9143 41 1 3.4188 -4.4310 4.1488 42 1 3.1453 -6.7920 5.4189 43 1 4.8173 -6.6320 4.8296 44 1 3.2771 -10.6902 3.4915 45 1 6.1914 -8.3776 5.6934 46 1 6.7765 -9.5512 7.7774 47 1 5.1479 -11.0634 8.8379 48 1 2.9311 -11.3953 7.8187 49 1 2.3429 -10.2151 5.7392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354309893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:36 Heat of formation + Delta-G solvation = -97.969485 kcal Electronic energy + Delta-G solvation = -27686.709660 eV Core-core repulsion = 23804.578135 eV Total energy + Delta-G solvation = -3882.131526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.09735 -40.63028 -39.78556 -37.16833 -36.37947 -35.79581 -33.38872 -32.96852 -31.60935 -31.51151 -30.15804 -28.11491 -27.14104 -25.36895 -24.23593 -23.17454 -22.19522 -21.87302 -21.51740 -21.05101 -18.84777 -18.29687 -17.91479 -17.31036 -17.09704 -16.91070 -16.60815 -16.20457 -15.78991 -15.66082 -15.61075 -15.22677 -14.84661 -14.78989 -14.52401 -14.33730 -14.03694 -13.93396 -13.78719 -13.44532 -13.24865 -13.16097 -13.07468 -12.85157 -12.72045 -12.63247 -12.41174 -12.31351 -12.07918 -11.95674 -11.93243 -11.70758 -11.49780 -11.04374 -10.75560 -10.57822 -10.36432 -10.16331 -10.00876 -9.62709 -9.26016 -8.44599 -6.11265 0.69191 0.74942 1.46087 1.57644 1.59231 1.72747 1.89122 1.95196 2.55770 2.61715 3.11981 3.36368 3.61319 3.87809 4.03727 4.06783 4.13190 4.14875 4.15394 4.29620 4.30836 4.31255 4.45710 4.49802 4.50671 4.64274 4.72132 4.74268 4.83328 4.84285 4.87612 4.92035 4.94820 5.02619 5.13647 5.24757 5.24994 5.30853 5.41923 5.44434 5.53300 5.54598 5.76058 5.83586 5.95542 6.24941 6.32031 6.41504 6.54357 6.74350 6.79109 7.26077 7.54295 7.64001 8.95808 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.002353 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.338875 B =11895.227540 C =13110.386951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 C -0.150 4.150 4 N -0.711 5.711 5 C 0.512 3.488 6 O -0.591 6.591 7 C -0.134 4.134 8 C 0.139 3.861 9 N -0.722 5.722 10 C 0.507 3.493 11 O -0.565 6.565 12 C -0.108 4.108 13 C 0.073 3.927 14 H 0.001 0.999 15 C -0.556 4.556 16 H 0.040 0.960 17 C -0.028 4.028 18 N -0.945 5.945 19 Si 1.096 2.904 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.263 1.263 23 C -0.056 4.056 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.144 4.144 27 C -0.125 4.125 28 C -0.153 4.153 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.419 0.581 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.418 0.582 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.261 0.739 45 H 0.115 0.885 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.134 0.866 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 25.540 8.625 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 C -0.208 4.208 4 N -0.364 5.364 5 C 0.299 3.701 6 O -0.471 6.471 7 C -0.174 4.174 8 C 0.014 3.986 9 N -0.378 5.378 10 C 0.295 3.705 11 O -0.442 6.442 12 C -0.148 4.148 13 C 0.053 3.947 14 H 0.019 0.981 15 C -0.594 4.594 16 H 0.059 0.941 17 C -0.226 4.226 18 N -0.583 5.583 19 Si 0.920 3.080 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.188 1.188 23 C -0.057 4.057 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.161 4.161 27 C -0.143 4.143 28 C -0.171 4.171 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.257 0.743 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.256 0.744 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.071 0.929 45 H 0.133 0.867 46 H 0.161 0.839 47 H 0.164 0.836 48 H 0.152 0.848 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.951 23.672 5.918 24.419 hybrid contribution -0.623 0.826 1.103 1.512 sum -1.575 24.498 7.021 25.533 Atomic orbital electron populations 1.22156 0.95130 1.01108 1.03476 1.21019 0.94379 0.94275 0.87930 1.22010 1.01801 0.92703 1.04265 1.45986 1.66790 1.05976 1.17646 1.20908 0.76739 0.83097 0.89398 1.90761 1.51863 1.67202 1.37312 1.21741 1.06570 0.92009 0.97031 1.20751 0.98459 0.91880 0.87501 1.45771 1.68822 1.06206 1.16980 1.21132 0.76868 0.82409 0.90136 1.90757 1.49495 1.67118 1.36794 1.21561 1.02750 0.95994 0.94483 1.17698 0.95859 0.90730 0.90375 0.98072 1.21816 1.09260 1.09888 1.18482 0.94124 1.26727 0.99600 0.93378 1.02873 1.70812 1.20670 1.37506 1.29337 0.83227 0.74919 0.75642 0.74179 1.21463 1.21647 1.18758 1.20609 0.94285 0.96416 0.94365 1.21008 0.95657 1.01227 0.95956 1.21411 1.00223 0.97053 0.95504 1.21309 0.93631 0.99919 1.01281 1.21291 0.98003 0.99533 0.95494 1.21119 0.99251 0.99552 0.97195 0.90515 0.95154 0.90748 0.92374 0.91738 0.90150 0.90165 0.74292 0.84554 0.84662 0.94442 0.94183 0.74437 0.88466 0.88023 0.92906 0.86668 0.83865 0.83550 0.84783 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.48 71.98 0.68 -1.56 16 2 C 0.13 1.79 3.18 44.99 0.14 1.93 16 3 C -0.15 -1.01 9.38 71.98 0.68 -0.33 16 4 N -0.71 -9.18 5.08 -442.53 -2.25 -11.43 16 5 C 0.51 10.90 7.79 87.66 0.68 11.59 16 6 O -0.59 -19.97 15.65 -3.03 -0.05 -20.02 16 7 C -0.13 -2.07 5.81 29.85 0.17 -1.90 16 8 C 0.14 4.07 4.96 86.38 0.43 4.50 16 9 N -0.72 -20.48 5.56 -463.05 -2.57 -23.05 16 10 C 0.51 21.06 7.58 87.66 0.66 21.72 16 11 O -0.57 -31.36 15.02 -3.04 -0.05 -31.41 16 12 C -0.11 -4.17 4.95 29.85 0.15 -4.02 16 13 C 0.07 3.65 1.23 -12.28 -0.02 3.64 16 14 H 0.00 0.06 6.59 -2.39 -0.02 0.04 16 15 C -0.56 -31.82 6.35 25.60 0.16 -31.66 16 16 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 17 C -0.03 -1.69 5.45 84.65 0.46 -1.23 16 18 N -0.94 -62.03 13.56 21.44 0.29 -61.74 16 19 Si 1.10 55.92 29.91 68.60 2.05 57.97 16 20 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 21 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 22 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 23 C -0.06 -2.53 4.53 -19.87 -0.09 -2.62 16 24 C -0.12 -4.74 8.90 22.27 0.20 -4.54 16 25 C -0.12 -4.01 10.05 22.27 0.22 -3.79 16 26 C -0.14 -4.41 10.05 22.27 0.22 -4.18 16 27 C -0.13 -4.36 10.05 22.27 0.22 -4.13 16 28 C -0.15 -6.53 9.18 22.27 0.20 -6.32 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.18 7.58 -2.39 -0.02 1.16 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.42 2.03 8.60 -92.71 -0.80 1.23 16 37 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.14 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 40 H 0.04 1.42 8.10 -2.39 -0.02 1.40 16 41 H 0.42 7.42 8.47 -92.71 -0.79 6.63 16 42 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.10 3.46 7.96 -2.39 -0.02 3.44 16 44 H 0.26 17.04 6.24 -92.70 -0.58 16.47 16 45 H 0.12 4.42 7.85 -2.91 -0.02 4.40 16 46 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 47 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 48 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 49 H 0.09 4.17 7.95 -2.91 -0.02 4.15 16 Total: -1.00 -92.23 407.74 2.18 -90.05 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.45 Total: 22.52 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 5.19 Total: -22.90 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -4.53 Total: -96.22 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.09 Total: -51.43 kcal Atomic # 14 Polarization: 55.92 SS G_CDS: 2.05 Total: 57.97 kcal Total: -92.23 2.18 -90.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354309893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.917 kcal (2) G-P(sol) polarization free energy of solvation -92.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds