Wall clock time and date at job start Tue Mar 31 2020 17:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47680 * 2 1 4 4 N 1.46494 * 109.47230 * 179.97438 * 3 2 1 5 5 C 1.34782 * 119.99994 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99862 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00027 * 180.02562 * 5 4 3 8 8 C 1.53005 * 109.46871 * 180.02562 * 7 5 4 9 9 N 1.46506 * 109.46773 * 180.02562 * 8 7 5 10 10 C 1.34773 * 119.99707 * 179.97438 * 9 8 7 11 11 O 1.21284 * 120.00085 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.99804 * 179.97438 * 10 9 8 13 13 C 1.53001 * 109.47066 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47486 * 54.05268 * 13 12 10 15 15 C 1.50698 * 109.46901 * 294.05498 * 13 12 10 16 16 H 1.08002 * 120.00397 * 330.08136 * 15 13 12 17 17 C 1.37877 * 119.99983 * 150.08139 * 15 13 12 18 18 N 1.31513 * 120.00147 * 6.55933 * 17 15 13 19 19 Si 1.86806 * 120.00054 * 186.55449 * 17 15 13 20 20 H 1.48501 * 109.47229 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47340 * 300.00345 * 19 17 15 22 22 H 1.48505 * 109.46728 * 60.00313 * 19 17 15 23 23 C 1.50704 * 109.47322 * 174.05774 * 13 12 10 24 24 C 1.38232 * 120.00156 * 64.30019 * 23 13 12 25 25 C 1.38227 * 120.00423 * 179.81276 * 24 23 13 26 26 C 1.38243 * 119.99751 * 0.39675 * 25 24 23 27 27 C 1.38236 * 119.99618 * 359.85625 * 26 25 24 28 28 C 1.38229 * 120.00074 * 359.95579 * 27 26 25 29 29 H 1.08997 * 109.47357 * 300.00156 * 1 2 3 30 30 H 1.09002 * 109.46622 * 59.99858 * 1 2 3 31 31 H 1.08996 * 109.47640 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46885 * 239.99495 * 2 1 3 33 33 H 1.09002 * 109.46622 * 120.00141 * 2 1 3 34 34 H 1.08997 * 109.46853 * 59.99535 * 3 2 1 35 35 H 1.09003 * 109.46785 * 300.00111 * 3 2 1 36 36 H 0.96995 * 120.00196 * 0.02562 * 4 3 2 37 37 H 1.08997 * 109.47426 * 60.00330 * 7 5 4 38 38 H 1.09003 * 109.47451 * 300.00148 * 7 5 4 39 39 H 1.08999 * 109.47178 * 60.00604 * 8 7 5 40 40 H 1.08992 * 109.47341 * 299.99788 * 8 7 5 41 41 H 0.97001 * 120.00254 * 0.02562 * 9 8 7 42 42 H 1.08997 * 109.47426 * 60.00323 * 12 10 9 43 43 H 1.09004 * 109.47237 * 299.99638 * 12 10 9 44 44 H 0.96997 * 119.99910 * 354.72326 * 18 17 15 45 45 H 1.08007 * 119.99790 * 359.97438 * 24 23 13 46 46 H 1.08004 * 120.00499 * 180.23296 * 25 24 23 47 47 H 1.08002 * 119.99679 * 179.83680 * 26 25 24 48 48 H 1.07995 * 119.99385 * 179.97438 * 27 26 25 49 49 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1790 2.6095 0.0002 6 8 3.5727 3.6599 -0.0002 7 6 5.6860 2.6094 0.0003 8 6 6.1961 4.0519 0.0004 9 7 7.6611 4.0518 -0.0002 10 6 8.3350 5.2189 -0.0007 11 8 7.7287 6.2693 -0.0002 12 6 9.8420 5.2188 -0.0007 13 6 10.3521 6.6613 -0.0007 14 1 9.9045 7.2050 0.8312 15 6 9.9735 7.3279 -1.2981 16 1 9.8808 6.7409 -2.2000 17 6 9.7455 8.6872 -1.3339 18 7 9.9827 9.4220 -0.2693 19 14 9.0998 9.4852 -2.8946 20 1 8.9401 10.9451 -2.6746 21 1 10.0603 9.2533 -4.0032 22 1 7.7849 8.8915 -3.2465 23 6 11.8519 6.6638 0.1464 24 6 12.6442 6.1089 -0.8411 25 6 14.0201 6.1146 -0.7081 26 6 14.6034 6.6680 0.4165 27 6 13.8109 7.2182 1.4064 28 6 12.4352 7.2159 1.2715 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.6767 1.9562 0.8899 35 1 1.6768 1.9562 -0.8900 36 1 3.9900 0.6023 0.0006 37 1 6.0494 2.0953 -0.8895 38 1 6.0493 2.0958 0.8904 39 1 5.8328 4.5657 0.8904 40 1 5.8329 4.5658 -0.8895 41 1 8.1461 3.2117 -0.0009 42 1 10.2053 4.7046 -0.8905 43 1 10.2053 4.7054 0.8896 44 1 10.2445 8.9991 0.5634 45 1 12.1883 5.6731 -1.7179 46 1 14.6393 5.6844 -1.4814 47 1 15.6783 6.6701 0.5216 48 1 14.2666 7.6501 2.2851 49 1 11.8160 7.6462 2.0447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354813965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:40 Heat of formation + Delta-G solvation = -73.491223 kcal Electronic energy + Delta-G solvation = -27400.238413 eV Core-core repulsion = 23519.168344 eV Total energy + Delta-G solvation = -3881.070069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.03780 -39.07672 -38.24269 -36.22913 -34.91907 -34.05558 -33.03237 -31.44079 -30.76367 -30.09237 -28.80954 -26.76537 -25.12185 -23.51201 -22.58667 -22.04867 -21.64216 -20.60908 -20.23877 -19.44415 -17.23585 -16.92773 -16.48081 -16.37951 -16.14597 -15.70844 -15.58220 -15.15886 -14.67304 -14.25989 -14.11749 -13.84744 -13.62562 -13.55532 -13.31038 -12.99910 -12.87092 -12.62719 -12.52926 -12.36548 -12.27204 -11.87536 -11.81170 -11.61333 -11.60633 -11.37438 -11.32597 -10.85766 -10.66020 -10.41147 -10.12685 -10.09356 -9.99928 -9.61883 -9.40259 -8.99335 -8.63100 -8.54458 -8.21951 -8.12316 -7.60982 -6.18883 -3.86450 2.20769 2.26581 2.42263 2.78526 3.51408 3.54498 3.61372 3.73547 3.75469 4.34971 4.48296 4.53076 4.64005 4.70325 4.71835 4.85204 4.89215 5.15646 5.15837 5.22269 5.34287 5.47007 5.54076 5.61044 5.63623 5.65019 5.69977 5.73302 5.77924 5.93258 6.02020 6.08010 6.11983 6.17015 6.23226 6.33324 6.44248 6.71270 6.81066 6.87552 6.95262 7.15813 7.22762 7.24493 7.40558 7.74892 7.87793 7.97409 8.05154 8.26510 8.54853 9.01427 9.06890 9.82795 11.21496 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.002207 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.025743 B =12684.358210 C =13985.359104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.736 5.736 5 C 0.516 3.484 6 O -0.529 6.529 7 C -0.151 4.151 8 C 0.137 3.863 9 N -0.752 5.752 10 C 0.512 3.488 11 O -0.495 6.495 12 C -0.116 4.116 13 C 0.071 3.929 14 H 0.051 0.949 15 C -0.567 4.567 16 H 0.045 0.955 17 C 0.032 3.968 18 N -0.905 5.905 19 Si 1.062 2.938 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.288 1.288 23 C -0.030 4.030 24 C -0.108 4.108 25 C -0.130 4.130 26 C -0.153 4.153 27 C -0.124 4.124 28 C -0.130 4.130 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.400 0.600 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.391 0.609 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.269 0.731 45 H 0.114 0.886 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 -22.659 2.070 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.389 5.389 5 C 0.301 3.699 6 O -0.405 6.405 7 C -0.191 4.191 8 C 0.012 3.988 9 N -0.409 5.409 10 C 0.298 3.702 11 O -0.366 6.366 12 C -0.156 4.156 13 C 0.052 3.948 14 H 0.069 0.931 15 C -0.605 4.605 16 H 0.063 0.937 17 C -0.174 4.174 18 N -0.541 5.541 19 Si 0.891 3.109 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.031 4.031 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.172 4.172 27 C -0.143 4.143 28 C -0.148 4.148 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.224 0.776 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.132 0.868 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.118 -19.566 1.393 21.632 hybrid contribution 0.880 -2.371 0.558 2.590 sum -8.238 -21.938 1.950 23.514 Atomic orbital electron populations 1.21683 0.94498 1.02180 1.02479 1.21735 0.97091 0.95814 1.02690 1.21412 0.79587 0.97115 1.02641 1.46026 1.07394 1.08716 1.76803 1.20537 0.89977 0.83573 0.75783 1.90779 1.70403 1.31151 1.48122 1.21824 0.92239 1.00181 1.04888 1.20857 0.80638 0.93578 1.03692 1.46161 1.06094 1.09105 1.79498 1.20859 0.90678 0.82857 0.75779 1.90772 1.69874 1.30713 1.45193 1.21680 0.90736 1.01815 1.01406 1.17875 0.86374 0.90342 1.00217 0.93070 1.21513 1.50250 0.95458 0.93266 0.93684 1.25587 0.93971 0.94434 1.03405 1.70759 1.42944 1.38378 1.01980 0.83650 0.76388 0.76246 0.74570 1.20951 1.21798 1.21444 1.20832 0.98778 0.92150 0.91317 1.20911 0.92649 1.00350 0.98697 1.21007 0.95167 1.01066 0.97540 1.20819 0.98538 1.02278 0.95522 1.20962 0.94111 1.00453 0.98727 1.21067 0.94302 1.01166 0.98268 0.92285 0.92264 0.92161 0.91294 0.91312 0.91435 0.91410 0.76589 0.88236 0.88301 0.91173 0.91016 0.77593 0.90292 0.91689 0.91893 0.86754 0.87484 0.87620 0.87488 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.30 16 2 C -0.14 -0.62 6.05 -26.73 -0.16 -0.78 16 3 C 0.12 0.86 5.67 -4.05 -0.02 0.83 16 4 N -0.74 -5.45 5.56 -60.30 -0.33 -5.79 16 5 C 0.52 5.70 7.83 -10.98 -0.09 5.61 16 6 O -0.53 -8.56 15.98 5.55 0.09 -8.47 16 7 C -0.15 -1.34 5.81 -27.88 -0.16 -1.51 16 8 C 0.14 1.97 4.96 -4.04 -0.02 1.95 16 9 N -0.75 -11.01 5.56 -60.29 -0.33 -11.34 16 10 C 0.51 10.38 7.58 -10.99 -0.08 10.30 16 11 O -0.49 -12.88 15.02 5.55 0.08 -12.80 16 12 C -0.12 -2.25 4.94 -27.88 -0.14 -2.39 16 13 C 0.07 1.72 1.31 -92.92 -0.12 1.60 16 14 H 0.05 1.40 6.23 -51.93 -0.32 1.08 16 15 C -0.57 -15.67 6.40 -34.44 -0.22 -15.89 16 16 H 0.04 1.24 7.82 -52.49 -0.41 0.83 16 17 C 0.03 0.93 5.45 -17.82 -0.10 0.84 16 18 N -0.91 -28.16 13.63 55.43 0.76 -27.41 16 19 Si 1.06 26.95 29.91 -169.99 -5.08 21.87 16 20 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 16 24 C -0.11 -2.20 8.88 -39.59 -0.35 -2.56 16 25 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 26 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 27 C -0.12 -2.30 10.05 -39.59 -0.40 -2.69 16 28 C -0.13 -2.73 9.67 -39.59 -0.38 -3.12 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.40 1.65 8.47 -40.82 -0.35 1.31 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.39 4.10 8.47 -40.82 -0.35 3.75 16 42 H 0.08 1.41 7.87 -51.93 -0.41 1.00 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.27 8.28 6.68 -40.82 -0.27 8.01 16 45 H 0.11 2.27 7.80 -52.48 -0.41 1.86 16 46 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 47 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 48 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 LS Contribution 409.45 15.07 6.17 6.17 Total: -1.00 -37.73 409.45 -9.89 -47.62 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -8.07 Total: 5.21 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -3.17 Total: -15.06 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.09 Total: -44.54 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.17 Total: -21.27 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: -5.08 Total: 21.87 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.73 -9.89 -47.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354813965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.867 kcal (2) G-P(sol) polarization free energy of solvation -37.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds