Wall clock time and date at job start Tue Mar 31 2020 17:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47680 * 2 1 4 4 N 1.46494 * 109.47230 * 179.97438 * 3 2 1 5 5 C 1.34782 * 119.99994 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99862 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00027 * 180.02562 * 5 4 3 8 8 C 1.53005 * 109.46871 * 180.02562 * 7 5 4 9 9 N 1.46506 * 109.46773 * 180.02562 * 8 7 5 10 10 C 1.34773 * 119.99707 * 179.97438 * 9 8 7 11 11 O 1.21284 * 120.00085 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.99804 * 179.97438 * 10 9 8 13 13 C 1.53001 * 109.47066 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47486 * 54.05268 * 13 12 10 15 15 C 1.50698 * 109.46901 * 294.05498 * 13 12 10 16 16 H 1.08002 * 120.00397 * 330.08136 * 15 13 12 17 17 C 1.37877 * 119.99983 * 150.08139 * 15 13 12 18 18 N 1.31513 * 120.00147 * 6.55933 * 17 15 13 19 19 Si 1.86806 * 120.00054 * 186.55449 * 17 15 13 20 20 H 1.48501 * 109.47229 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47340 * 300.00345 * 19 17 15 22 22 H 1.48505 * 109.46728 * 60.00313 * 19 17 15 23 23 C 1.50704 * 109.47322 * 174.05774 * 13 12 10 24 24 C 1.38232 * 120.00156 * 64.30019 * 23 13 12 25 25 C 1.38227 * 120.00423 * 179.81276 * 24 23 13 26 26 C 1.38243 * 119.99751 * 0.39675 * 25 24 23 27 27 C 1.38236 * 119.99618 * 359.85625 * 26 25 24 28 28 C 1.38229 * 120.00074 * 359.95579 * 27 26 25 29 29 H 1.08997 * 109.47357 * 300.00156 * 1 2 3 30 30 H 1.09002 * 109.46622 * 59.99858 * 1 2 3 31 31 H 1.08996 * 109.47640 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46885 * 239.99495 * 2 1 3 33 33 H 1.09002 * 109.46622 * 120.00141 * 2 1 3 34 34 H 1.08997 * 109.46853 * 59.99535 * 3 2 1 35 35 H 1.09003 * 109.46785 * 300.00111 * 3 2 1 36 36 H 0.96995 * 120.00196 * 0.02562 * 4 3 2 37 37 H 1.08997 * 109.47426 * 60.00330 * 7 5 4 38 38 H 1.09003 * 109.47451 * 300.00148 * 7 5 4 39 39 H 1.08999 * 109.47178 * 60.00604 * 8 7 5 40 40 H 1.08992 * 109.47341 * 299.99788 * 8 7 5 41 41 H 0.97001 * 120.00254 * 0.02562 * 9 8 7 42 42 H 1.08997 * 109.47426 * 60.00323 * 12 10 9 43 43 H 1.09004 * 109.47237 * 299.99638 * 12 10 9 44 44 H 0.96997 * 119.99910 * 354.72326 * 18 17 15 45 45 H 1.08007 * 119.99790 * 359.97438 * 24 23 13 46 46 H 1.08004 * 120.00499 * 180.23296 * 25 24 23 47 47 H 1.08002 * 119.99679 * 179.83680 * 26 25 24 48 48 H 1.07995 * 119.99385 * 179.97438 * 27 26 25 49 49 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1790 2.6095 0.0002 6 8 3.5727 3.6599 -0.0002 7 6 5.6860 2.6094 0.0003 8 6 6.1961 4.0519 0.0004 9 7 7.6611 4.0518 -0.0002 10 6 8.3350 5.2189 -0.0007 11 8 7.7287 6.2693 -0.0002 12 6 9.8420 5.2188 -0.0007 13 6 10.3521 6.6613 -0.0007 14 1 9.9045 7.2050 0.8312 15 6 9.9735 7.3279 -1.2981 16 1 9.8808 6.7409 -2.2000 17 6 9.7455 8.6872 -1.3339 18 7 9.9827 9.4220 -0.2693 19 14 9.0998 9.4852 -2.8946 20 1 8.9401 10.9451 -2.6746 21 1 10.0603 9.2533 -4.0032 22 1 7.7849 8.8915 -3.2465 23 6 11.8519 6.6638 0.1464 24 6 12.6442 6.1089 -0.8411 25 6 14.0201 6.1146 -0.7081 26 6 14.6034 6.6680 0.4165 27 6 13.8109 7.2182 1.4064 28 6 12.4352 7.2159 1.2715 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.6767 1.9562 0.8899 35 1 1.6768 1.9562 -0.8900 36 1 3.9900 0.6023 0.0006 37 1 6.0494 2.0953 -0.8895 38 1 6.0493 2.0958 0.8904 39 1 5.8328 4.5657 0.8904 40 1 5.8329 4.5658 -0.8895 41 1 8.1461 3.2117 -0.0009 42 1 10.2053 4.7046 -0.8905 43 1 10.2053 4.7054 0.8896 44 1 10.2445 8.9991 0.5634 45 1 12.1883 5.6731 -1.7179 46 1 14.6393 5.6844 -1.4814 47 1 15.6783 6.6701 0.5216 48 1 14.2666 7.6501 2.2851 49 1 11.8160 7.6462 2.0447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354813965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:39 Heat of formation + Delta-G solvation = -100.555253 kcal Electronic energy + Delta-G solvation = -27401.411997 eV Core-core repulsion = 23519.168344 eV Total energy + Delta-G solvation = -3882.243653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.05180 -40.59096 -39.77089 -36.95974 -36.38327 -35.79465 -33.70136 -33.32408 -31.98147 -31.58620 -30.26129 -27.65658 -26.78862 -25.02550 -23.96094 -23.16538 -22.57905 -21.88606 -21.50635 -20.96505 -18.82163 -18.22998 -17.86576 -17.32588 -17.21011 -16.90699 -16.67168 -16.38805 -16.06396 -15.68453 -15.64716 -15.51172 -14.83617 -14.81420 -14.49528 -14.32848 -14.02111 -13.93033 -13.84020 -13.45515 -13.42830 -13.14836 -13.07291 -12.80715 -12.73941 -12.60562 -12.40040 -12.08429 -12.05325 -11.94789 -11.76774 -11.70639 -11.47185 -11.09120 -10.74156 -10.61805 -10.32037 -10.17229 -10.00837 -9.62281 -9.25555 -8.44817 -6.10385 0.69673 0.75682 1.45764 1.56461 1.58295 1.72165 1.89504 1.94100 2.55388 2.60487 3.12277 3.38958 3.60882 3.89217 4.02753 4.03318 4.08173 4.13679 4.15045 4.29920 4.31684 4.33861 4.45981 4.49786 4.51332 4.63543 4.64898 4.75213 4.83479 4.84579 4.86412 4.87967 4.94816 5.13490 5.14271 5.22986 5.25269 5.31868 5.42592 5.44342 5.46169 5.53920 5.76434 5.84356 5.95440 6.25327 6.32000 6.40703 6.50460 6.74732 6.79561 7.22097 7.54698 7.65261 8.95484 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.002207 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.025743 B =12684.358210 C =13985.359104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.113 3.887 4 N -0.714 5.714 5 C 0.510 3.490 6 O -0.593 6.593 7 C -0.133 4.133 8 C 0.138 3.862 9 N -0.722 5.722 10 C 0.508 3.492 11 O -0.566 6.566 12 C -0.109 4.109 13 C 0.071 3.929 14 H 0.004 0.996 15 C -0.555 4.555 16 H 0.041 0.959 17 C -0.029 4.029 18 N -0.943 5.943 19 Si 1.098 2.902 20 H -0.289 1.289 21 H -0.263 1.263 22 H -0.289 1.289 23 C -0.054 4.054 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.144 4.144 27 C -0.125 4.125 28 C -0.153 4.153 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.421 0.579 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.418 0.582 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.257 0.743 45 H 0.116 0.884 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.134 0.866 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.366 -26.745 1.230 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.011 4.011 4 N -0.368 5.368 5 C 0.297 3.703 6 O -0.473 6.473 7 C -0.173 4.173 8 C 0.013 3.987 9 N -0.378 5.378 10 C 0.295 3.705 11 O -0.442 6.442 12 C -0.149 4.149 13 C 0.051 3.949 14 H 0.023 0.977 15 C -0.593 4.593 16 H 0.059 0.941 17 C -0.227 4.227 18 N -0.582 5.582 19 Si 0.923 3.077 20 H -0.215 1.215 21 H -0.188 1.188 22 H -0.216 1.216 23 C -0.055 4.055 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.162 4.162 27 C -0.143 4.143 28 C -0.171 4.171 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.259 0.741 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.256 0.744 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.134 0.866 46 H 0.162 0.838 47 H 0.164 0.836 48 H 0.152 0.848 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.639 -23.810 0.543 24.724 hybrid contribution 0.140 -1.244 0.881 1.531 sum -6.499 -25.054 1.424 25.923 Atomic orbital electron populations 1.21712 0.94524 1.02835 1.02022 1.21676 0.96963 0.93598 1.03951 1.21462 0.79484 0.99017 1.01150 1.45863 1.07528 1.08634 1.74750 1.20946 0.90908 0.83511 0.74932 1.90768 1.71671 1.33552 1.51331 1.21733 0.90532 0.96483 1.08505 1.20758 0.80027 0.97159 1.00727 1.45771 1.06335 1.08724 1.76964 1.21133 0.91251 0.83255 0.74861 1.90756 1.71101 1.33548 1.48810 1.21578 0.90056 0.99315 1.03913 1.17721 0.88146 0.92310 0.96699 0.97727 1.21806 1.47996 0.95110 0.94396 0.94091 1.26742 0.94636 0.96150 1.05155 1.70848 1.46372 1.38642 1.02303 0.83188 0.76431 0.75175 0.72952 1.21531 1.18842 1.21559 1.20588 0.97360 0.94493 0.93027 1.21002 0.93957 1.00837 0.98144 1.21410 0.94284 0.99947 0.98497 1.21307 1.00504 1.00092 0.94307 1.21285 0.92875 0.99990 1.00182 1.21111 0.95846 1.02036 0.98152 0.92785 0.92815 0.90883 0.89990 0.89943 0.93006 0.93072 0.74130 0.84577 0.84398 0.94127 0.94456 0.74418 0.88036 0.88504 0.93219 0.86627 0.83850 0.83575 0.84846 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.45 16 2 C -0.12 -0.87 6.05 30.59 0.19 -0.69 16 3 C 0.11 1.60 5.67 86.38 0.49 2.09 16 4 N -0.71 -9.27 5.56 -463.07 -2.57 -11.85 16 5 C 0.51 10.91 7.83 87.66 0.69 11.60 16 6 O -0.59 -20.22 15.98 -3.04 -0.05 -20.27 16 7 C -0.13 -2.04 5.81 29.85 0.17 -1.86 16 8 C 0.14 4.04 4.96 86.38 0.43 4.47 16 9 N -0.72 -20.40 5.56 -463.05 -2.57 -22.97 16 10 C 0.51 21.01 7.58 87.66 0.66 21.67 16 11 O -0.57 -31.33 15.02 -3.04 -0.05 -31.38 16 12 C -0.11 -4.18 4.94 29.85 0.15 -4.03 16 13 C 0.07 3.53 1.31 -12.29 -0.02 3.52 16 14 H 0.00 0.27 6.23 -2.39 -0.01 0.25 16 15 C -0.55 -31.63 6.40 25.60 0.16 -31.46 16 16 H 0.04 2.30 7.82 -2.91 -0.02 2.28 16 17 C -0.03 -1.76 5.45 84.65 0.46 -1.29 16 18 N -0.94 -61.93 13.63 21.45 0.29 -61.64 16 19 Si 1.10 56.03 29.91 68.60 2.05 58.08 16 20 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 21 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 23 C -0.05 -2.43 4.77 -19.87 -0.09 -2.52 16 24 C -0.12 -4.74 8.88 22.27 0.20 -4.54 16 25 C -0.12 -3.97 10.05 22.27 0.22 -3.75 16 26 C -0.14 -4.42 10.05 22.27 0.22 -4.20 16 27 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 28 C -0.15 -6.54 9.67 22.27 0.22 -6.33 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.42 1.96 8.47 -92.71 -0.79 1.18 16 37 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.04 1.43 8.10 -2.39 -0.02 1.41 16 40 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 41 H 0.42 7.35 8.47 -92.71 -0.79 6.56 16 42 H 0.10 3.44 7.87 -2.39 -0.02 3.42 16 43 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 44 H 0.26 16.98 6.68 -92.71 -0.62 16.36 16 45 H 0.12 4.38 7.80 -2.91 -0.02 4.36 16 46 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 47 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 48 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 49 H 0.09 4.15 7.95 -2.91 -0.02 4.13 16 Total: -1.00 -92.02 409.45 1.72 -90.31 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.48 Total: 21.65 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 5.09 Total: -21.93 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -4.85 Total: -96.45 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -0.09 Total: -51.65 kcal Atomic # 14 Polarization: 56.03 SS G_CDS: 2.05 Total: 58.08 kcal Total: -92.02 1.72 -90.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354813965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.248 kcal (2) G-P(sol) polarization free energy of solvation -92.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds