Wall clock time and date at job start Tue Mar 31 2020 16:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47560 * 2 1 4 4 N 1.46501 * 109.47415 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99872 * 270.00109 * 4 3 2 6 6 C 1.50700 * 109.47214 * 269.99978 * 5 4 3 7 7 O 1.21284 * 120.00075 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00319 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00185 * 179.97438 * 8 6 5 10 10 C 1.34769 * 120.00199 * 90.00502 * 4 3 2 11 11 O 1.21284 * 120.00091 * 180.02562 * 10 4 3 12 12 C 1.50703 * 120.00156 * 359.97438 * 10 4 3 13 13 C 1.52995 * 109.47348 * 180.02562 * 12 10 4 14 14 H 1.08994 * 109.47385 * 53.81101 * 13 12 10 15 15 C 1.50707 * 109.46800 * 293.80633 * 13 12 10 16 16 H 1.07996 * 119.99939 * 324.79144 * 15 13 12 17 17 C 1.37876 * 119.99516 * 144.79724 * 15 13 12 18 18 N 1.31517 * 119.99498 * 181.40280 * 17 15 13 19 19 Si 1.86799 * 120.00347 * 1.40222 * 17 15 13 20 20 H 1.48496 * 109.47059 * 267.09616 * 19 17 15 21 21 H 1.48498 * 109.46945 * 27.10055 * 19 17 15 22 22 H 1.48502 * 109.46861 * 147.09689 * 19 17 15 23 23 C 1.50699 * 109.46966 * 173.80920 * 13 12 10 24 24 C 1.38237 * 120.00135 * 66.64777 * 23 13 12 25 25 C 1.38237 * 120.00124 * 179.80917 * 24 23 13 26 26 C 1.38241 * 119.99834 * 0.39586 * 25 24 23 27 27 C 1.38239 * 119.99727 * 359.85702 * 26 25 24 28 28 C 1.38229 * 120.00171 * 359.95425 * 27 26 25 29 29 H 1.08998 * 109.46861 * 299.99695 * 1 2 3 30 30 H 1.08999 * 109.47161 * 59.99729 * 1 2 3 31 31 H 1.09000 * 109.47471 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47351 * 239.99836 * 2 1 3 33 33 H 1.08999 * 109.47161 * 120.00271 * 2 1 3 34 34 H 1.09003 * 109.47194 * 60.00043 * 3 2 1 35 35 H 1.08999 * 109.47105 * 300.00305 * 3 2 1 36 36 H 1.08997 * 109.47103 * 29.99683 * 5 4 3 37 37 H 1.08995 * 109.46978 * 149.99676 * 5 4 3 38 38 H 0.97006 * 119.99613 * 0.02562 * 8 6 5 39 39 H 1.08997 * 109.47259 * 300.00369 * 9 8 6 40 40 H 1.09005 * 109.46891 * 60.01025 * 9 8 6 41 41 H 1.08999 * 109.46692 * 180.02562 * 9 8 6 42 42 H 1.09004 * 109.46561 * 60.00018 * 12 10 4 43 43 H 1.09003 * 109.46933 * 300.01124 * 12 10 4 44 44 H 0.96996 * 119.99967 * 179.97438 * 18 17 15 45 45 H 1.07999 * 120.00352 * 359.97438 * 24 23 13 46 46 H 1.07995 * 120.00255 * 180.23001 * 25 24 23 47 47 H 1.08003 * 119.99960 * 179.83276 * 26 25 24 48 48 H 1.08003 * 119.99758 * 179.97438 * 27 26 25 49 49 H 1.08004 * 119.99873 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2381 1.4421 1.2679 6 6 4.4895 2.8629 1.7031 7 8 4.0948 3.7849 1.0211 8 7 5.1520 3.1090 2.8506 9 6 5.3969 4.4901 3.2734 10 6 4.1784 1.4426 -1.1680 11 8 5.3913 1.4421 -1.1685 12 6 3.4244 1.4424 -2.4729 13 6 4.4182 1.4421 -3.6362 14 1 5.1155 0.6128 -3.5182 15 6 5.1806 2.7421 -3.6458 16 1 4.6888 3.6586 -3.3552 17 6 6.5058 2.7612 -4.0257 18 7 7.1787 3.8910 -4.0077 19 14 7.3455 1.1824 -4.5660 20 1 8.0108 0.5510 -3.3982 21 1 6.3336 0.2495 -5.1236 22 1 8.3595 1.4920 -5.6058 23 6 3.6704 1.2886 -4.9355 24 6 2.8272 2.2939 -5.3707 25 6 2.1443 2.1548 -6.5645 26 6 2.2984 1.0069 -7.3192 27 6 3.1376 -0.0006 -6.8814 28 6 3.8234 0.1402 -5.6896 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.6493 0.9283 2.0277 37 1 5.1903 0.9283 1.1371 38 1 5.4674 2.3715 3.3963 39 1 5.9862 5.0035 2.5137 40 1 4.4446 5.0044 3.4037 41 1 5.9422 4.4899 4.2171 42 1 2.7975 2.3322 -2.5303 43 1 2.7979 0.5522 -2.5303 44 1 8.1111 3.9045 -4.2746 45 1 2.7040 3.1891 -4.7793 46 1 1.4884 2.9418 -6.9063 47 1 1.7628 0.8970 -8.2506 48 1 3.2576 -0.8976 -7.4708 49 1 4.4794 -0.6468 -5.3478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354831529.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:23 Heat of formation + Delta-G solvation = -48.354670 kcal Electronic energy + Delta-G solvation = -29566.671600 eV Core-core repulsion = 25686.691534 eV Total energy + Delta-G solvation = -3879.980066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.02041 -38.86537 -38.25125 -35.88300 -34.43647 -34.11930 -32.76422 -31.59889 -30.17058 -29.72464 -28.41484 -26.33939 -26.13044 -24.70456 -22.52730 -21.84913 -21.67682 -20.68606 -19.68403 -18.44148 -17.24553 -16.87616 -16.74945 -16.30326 -15.89554 -15.21319 -15.03240 -14.63927 -14.52780 -14.45765 -14.12967 -13.74211 -13.41801 -13.28456 -13.14581 -13.04079 -12.68925 -12.48492 -12.30384 -12.26546 -12.08887 -12.04917 -11.82356 -11.73480 -11.50890 -11.31917 -11.04266 -10.71189 -10.65916 -10.47716 -10.29355 -9.87431 -9.79490 -9.55253 -9.08106 -9.05175 -8.90552 -8.36837 -8.27191 -8.15446 -7.76442 -5.89160 -3.86137 2.14176 2.19030 2.83777 3.02023 3.45989 3.48458 3.52185 3.53894 3.65008 4.56913 4.64266 4.84805 4.87132 4.94299 5.07104 5.20807 5.28868 5.35080 5.40605 5.44476 5.51768 5.55587 5.60779 5.64104 5.72601 5.75508 5.78144 5.82827 5.94111 5.99241 6.04501 6.09644 6.15156 6.22051 6.30568 6.38956 6.44863 6.66515 6.72922 6.78946 6.89226 7.07134 7.18648 7.31875 7.54063 7.63765 7.78195 7.87260 7.89627 8.40088 8.62397 8.98786 9.11785 9.75022 11.24098 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.004615 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.339087 B = 6066.210027 C = 7815.982623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.117 3.883 4 N -0.612 5.612 5 C 0.102 3.898 6 C 0.491 3.509 7 O -0.515 6.515 8 N -0.742 5.742 9 C 0.090 3.910 10 C 0.524 3.476 11 O -0.498 6.498 12 C -0.112 4.112 13 C 0.056 3.944 14 H 0.049 0.951 15 C -0.485 4.485 16 H 0.071 0.929 17 C 0.085 3.915 18 N -0.899 5.899 19 Si 0.869 3.131 20 H -0.278 1.278 21 H -0.255 1.255 22 H -0.295 1.295 23 C -0.039 4.039 24 C -0.100 4.100 25 C -0.128 4.128 26 C -0.150 4.150 27 C -0.128 4.128 28 C -0.135 4.135 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.399 0.601 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.260 0.740 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.849 -8.444 11.942 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.007 4.007 4 N -0.347 5.347 5 C -0.026 4.026 6 C 0.276 3.724 7 O -0.389 6.389 8 N -0.396 5.396 9 C -0.055 4.055 10 C 0.313 3.687 11 O -0.369 6.369 12 C -0.152 4.152 13 C 0.037 3.963 14 H 0.067 0.933 15 C -0.522 4.522 16 H 0.089 0.911 17 C -0.117 4.117 18 N -0.537 5.537 19 Si 0.697 3.303 20 H -0.204 1.204 21 H -0.179 1.179 22 H -0.222 1.222 23 C -0.039 4.039 24 C -0.118 4.118 25 C -0.146 4.146 26 C -0.168 4.168 27 C -0.146 4.146 28 C -0.153 4.153 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.231 0.769 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.264 -7.648 11.347 17.724 hybrid contribution 0.862 -0.868 0.033 1.224 sum -10.402 -8.517 11.380 17.614 Atomic orbital electron populations 1.21695 0.95287 1.01728 1.02009 1.22006 0.95980 0.97610 1.02685 1.21539 0.79561 0.96139 1.03448 1.47731 1.06159 1.76210 1.04594 1.21104 1.00248 0.93373 0.87862 1.21499 0.77765 0.92853 0.80332 1.90753 1.49600 1.46104 1.52437 1.45798 1.59952 1.08971 1.24894 1.21477 1.01243 0.83024 0.99742 1.20855 0.88351 0.74749 0.84717 1.90725 1.13810 1.45955 1.86452 1.21688 0.99076 1.01792 0.92625 1.18143 0.92403 0.99769 0.85998 0.93330 1.20614 0.95108 0.91995 1.44496 0.91089 1.24887 0.97028 0.95542 0.94267 1.69905 1.09504 1.25951 1.48294 0.86971 0.79769 0.85277 0.78253 1.20355 1.17948 1.22215 1.20761 0.92831 0.91654 0.98680 1.20996 0.96164 0.98692 0.95928 1.21056 1.00528 0.97366 0.95653 1.20856 1.00992 0.95053 0.99869 1.20952 0.98162 0.98685 0.96796 1.21138 1.00291 0.98131 0.95786 0.92811 0.92292 0.92649 0.91289 0.91995 0.91128 0.89859 0.88380 0.87189 0.76852 0.92153 0.92546 0.91030 0.89662 0.91367 0.93017 0.86188 0.87217 0.87485 0.87451 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.15 0.37 -0.85 16 2 C -0.14 -1.42 6.26 -26.74 -0.17 -1.59 16 3 C 0.12 1.44 5.21 -4.04 -0.02 1.42 16 4 N -0.61 -9.72 1.96 -175.06 -0.34 -10.07 16 5 C 0.10 1.36 5.89 -5.19 -0.03 1.33 16 6 C 0.49 7.72 7.90 -10.99 -0.09 7.63 16 7 O -0.52 -10.83 16.43 5.55 0.09 -10.74 16 8 N -0.74 -8.55 5.71 -67.08 -0.38 -8.93 16 9 C 0.09 0.97 10.70 59.85 0.64 1.61 16 10 C 0.52 10.85 7.43 -10.99 -0.08 10.77 16 11 O -0.50 -12.64 14.60 5.55 0.08 -12.56 16 12 C -0.11 -2.20 3.52 -27.88 -0.10 -2.30 16 13 C 0.06 1.32 1.17 -92.92 -0.11 1.22 16 14 H 0.05 1.21 4.94 -51.93 -0.26 0.95 16 15 C -0.49 -13.89 6.88 -34.44 -0.24 -14.12 16 16 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 17 C 0.08 2.58 5.47 -17.82 -0.10 2.48 16 18 N -0.90 -29.14 13.96 55.43 0.77 -28.37 16 19 Si 0.87 23.14 27.00 -169.99 -4.59 18.55 16 20 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 21 H -0.26 -6.23 4.72 56.52 0.27 -5.96 16 22 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 23 C -0.04 -0.83 4.65 -104.62 -0.49 -1.31 16 24 C -0.10 -2.01 8.93 -39.58 -0.35 -2.36 16 25 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 26 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 27 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 28 C -0.14 -2.69 8.70 -39.59 -0.34 -3.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.76 7.22 -51.93 -0.37 0.38 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.08 1.08 6.44 -51.93 -0.33 0.75 16 36 H 0.10 0.86 8.07 -51.93 -0.42 0.44 16 37 H 0.11 1.53 7.42 -51.93 -0.39 1.14 16 38 H 0.40 3.03 8.83 -40.82 -0.36 2.67 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 1.65 7.31 -51.93 -0.38 1.27 16 43 H 0.07 1.12 7.18 -51.93 -0.37 0.75 16 44 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 45 H 0.12 2.45 7.87 -52.49 -0.41 2.03 16 46 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 48 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 49 H 0.11 2.15 7.12 -52.48 -0.37 1.77 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -39.05 399.37 -8.66 -47.71 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.01 Total: 5.65 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.30 Total: -7.26 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.05 Total: -47.36 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.17 Total: -23.30 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.59 Total: 18.55 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.05 -8.66 -47.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354831529.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.647 kcal (2) G-P(sol) polarization free energy of solvation -39.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds