Wall clock time and date at job start Tue Mar 31 2020 16:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47560 * 2 1 4 4 N 1.46501 * 109.47415 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99872 * 270.00109 * 4 3 2 6 6 C 1.50700 * 109.47214 * 269.99978 * 5 4 3 7 7 O 1.21284 * 120.00075 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00319 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00185 * 179.97438 * 8 6 5 10 10 C 1.34769 * 120.00199 * 90.00502 * 4 3 2 11 11 O 1.21284 * 120.00091 * 180.02562 * 10 4 3 12 12 C 1.50703 * 120.00156 * 359.97438 * 10 4 3 13 13 C 1.52995 * 109.47348 * 180.02562 * 12 10 4 14 14 H 1.08994 * 109.47385 * 53.81101 * 13 12 10 15 15 C 1.50707 * 109.46800 * 293.80633 * 13 12 10 16 16 H 1.07996 * 119.99939 * 324.79144 * 15 13 12 17 17 C 1.37876 * 119.99516 * 144.79724 * 15 13 12 18 18 N 1.31517 * 119.99498 * 181.40280 * 17 15 13 19 19 Si 1.86799 * 120.00347 * 1.40222 * 17 15 13 20 20 H 1.48496 * 109.47059 * 267.09616 * 19 17 15 21 21 H 1.48498 * 109.46945 * 27.10055 * 19 17 15 22 22 H 1.48502 * 109.46861 * 147.09689 * 19 17 15 23 23 C 1.50699 * 109.46966 * 173.80920 * 13 12 10 24 24 C 1.38237 * 120.00135 * 66.64777 * 23 13 12 25 25 C 1.38237 * 120.00124 * 179.80917 * 24 23 13 26 26 C 1.38241 * 119.99834 * 0.39586 * 25 24 23 27 27 C 1.38239 * 119.99727 * 359.85702 * 26 25 24 28 28 C 1.38229 * 120.00171 * 359.95425 * 27 26 25 29 29 H 1.08998 * 109.46861 * 299.99695 * 1 2 3 30 30 H 1.08999 * 109.47161 * 59.99729 * 1 2 3 31 31 H 1.09000 * 109.47471 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47351 * 239.99836 * 2 1 3 33 33 H 1.08999 * 109.47161 * 120.00271 * 2 1 3 34 34 H 1.09003 * 109.47194 * 60.00043 * 3 2 1 35 35 H 1.08999 * 109.47105 * 300.00305 * 3 2 1 36 36 H 1.08997 * 109.47103 * 29.99683 * 5 4 3 37 37 H 1.08995 * 109.46978 * 149.99676 * 5 4 3 38 38 H 0.97006 * 119.99613 * 0.02562 * 8 6 5 39 39 H 1.08997 * 109.47259 * 300.00369 * 9 8 6 40 40 H 1.09005 * 109.46891 * 60.01025 * 9 8 6 41 41 H 1.08999 * 109.46692 * 180.02562 * 9 8 6 42 42 H 1.09004 * 109.46561 * 60.00018 * 12 10 4 43 43 H 1.09003 * 109.46933 * 300.01124 * 12 10 4 44 44 H 0.96996 * 119.99967 * 179.97438 * 18 17 15 45 45 H 1.07999 * 120.00352 * 359.97438 * 24 23 13 46 46 H 1.07995 * 120.00255 * 180.23001 * 25 24 23 47 47 H 1.08003 * 119.99960 * 179.83276 * 26 25 24 48 48 H 1.08003 * 119.99758 * 179.97438 * 27 26 25 49 49 H 1.08004 * 119.99873 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2381 1.4421 1.2679 6 6 4.4895 2.8629 1.7031 7 8 4.0948 3.7849 1.0211 8 7 5.1520 3.1090 2.8506 9 6 5.3969 4.4901 3.2734 10 6 4.1784 1.4426 -1.1680 11 8 5.3913 1.4421 -1.1685 12 6 3.4244 1.4424 -2.4729 13 6 4.4182 1.4421 -3.6362 14 1 5.1155 0.6128 -3.5182 15 6 5.1806 2.7421 -3.6458 16 1 4.6888 3.6586 -3.3552 17 6 6.5058 2.7612 -4.0257 18 7 7.1787 3.8910 -4.0077 19 14 7.3455 1.1824 -4.5660 20 1 8.0108 0.5510 -3.3982 21 1 6.3336 0.2495 -5.1236 22 1 8.3595 1.4920 -5.6058 23 6 3.6704 1.2886 -4.9355 24 6 2.8272 2.2939 -5.3707 25 6 2.1443 2.1548 -6.5645 26 6 2.2984 1.0069 -7.3192 27 6 3.1376 -0.0006 -6.8814 28 6 3.8234 0.1402 -5.6896 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.6493 0.9283 2.0277 37 1 5.1903 0.9283 1.1371 38 1 5.4674 2.3715 3.3963 39 1 5.9862 5.0035 2.5137 40 1 4.4446 5.0044 3.4037 41 1 5.9422 4.4899 4.2171 42 1 2.7975 2.3322 -2.5303 43 1 2.7979 0.5522 -2.5303 44 1 8.1111 3.9045 -4.2746 45 1 2.7040 3.1891 -4.7793 46 1 1.4884 2.9418 -6.9063 47 1 1.7628 0.8970 -8.2506 48 1 3.2576 -0.8976 -7.4708 49 1 4.4794 -0.6468 -5.3478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354831529.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:21 Heat of formation + Delta-G solvation = -75.903712 kcal Electronic energy + Delta-G solvation = -29567.866216 eV Core-core repulsion = 25686.691534 eV Total energy + Delta-G solvation = -3881.174682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.40006 -40.31506 -39.69057 -37.17580 -35.91608 -35.60937 -33.85578 -33.67447 -31.61074 -31.06649 -29.76628 -27.95768 -27.20403 -26.10531 -24.19044 -23.28132 -22.59500 -21.94876 -21.21296 -19.92298 -19.01464 -18.45103 -18.18903 -17.56256 -17.28148 -16.55620 -16.37864 -16.24396 -15.83665 -15.69321 -15.48729 -15.33835 -14.86889 -14.68001 -14.54225 -14.22139 -14.17222 -14.03092 -13.86186 -13.54229 -13.35164 -13.14732 -13.06139 -12.93485 -12.89094 -12.67477 -12.52618 -12.19951 -12.01815 -11.91347 -11.78745 -11.53022 -11.47920 -11.22286 -11.03722 -10.73571 -10.52642 -10.16201 -9.61160 -9.59628 -9.30099 -8.22234 -6.20396 0.68608 0.73311 1.30161 1.35306 1.41820 1.59524 1.73269 2.06341 2.40623 2.48706 3.08392 3.22716 3.74853 3.86081 4.01334 4.13034 4.17660 4.25447 4.28705 4.32192 4.41273 4.41972 4.43572 4.47586 4.54311 4.55852 4.59104 4.62970 4.76605 4.84497 4.86372 4.88757 5.01447 5.09231 5.18147 5.24440 5.29679 5.37769 5.40313 5.42494 5.51205 5.61963 5.68669 5.77112 5.82996 6.03260 6.32092 6.36370 6.46851 6.54454 6.79187 7.27458 7.42752 7.44428 8.95790 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.004615 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.339087 B = 6066.210027 C = 7815.982623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.111 3.889 4 N -0.604 5.604 5 C 0.099 3.901 6 C 0.482 3.518 7 O -0.582 6.582 8 N -0.723 5.723 9 C 0.086 3.914 10 C 0.516 3.484 11 O -0.559 6.559 12 C -0.105 4.105 13 C 0.060 3.940 14 H 0.037 0.963 15 C -0.465 4.465 16 H 0.020 0.980 17 C 0.017 3.983 18 N -0.958 5.958 19 Si 0.927 3.073 20 H -0.287 1.287 21 H -0.219 1.219 22 H -0.295 1.295 23 C -0.063 4.063 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.138 4.138 27 C -0.122 4.122 28 C -0.149 4.149 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.156 0.844 37 H 0.106 0.894 38 H 0.421 0.579 39 H 0.027 0.973 40 H 0.053 0.947 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.257 0.743 45 H 0.099 0.901 46 H 0.136 0.864 47 H 0.148 0.852 48 H 0.144 0.856 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.365 -11.917 11.914 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.011 4.011 4 N -0.337 5.337 5 C -0.028 4.028 6 C 0.268 3.732 7 O -0.460 6.460 8 N -0.377 5.377 9 C -0.058 4.058 10 C 0.306 3.694 11 O -0.435 6.435 12 C -0.145 4.145 13 C 0.041 3.959 14 H 0.055 0.945 15 C -0.502 4.502 16 H 0.038 0.962 17 C -0.178 4.178 18 N -0.600 5.600 19 Si 0.753 3.247 20 H -0.214 1.214 21 H -0.142 1.142 22 H -0.222 1.222 23 C -0.064 4.064 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.156 4.156 27 C -0.140 4.140 28 C -0.167 4.167 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.174 0.826 37 H 0.124 0.876 38 H 0.258 0.742 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.066 0.934 45 H 0.118 0.882 46 H 0.154 0.846 47 H 0.166 0.834 48 H 0.161 0.839 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.844 -11.176 11.392 21.127 hybrid contribution 1.463 0.275 0.142 1.496 sum -12.380 -10.901 11.535 20.128 Atomic orbital electron populations 1.21678 0.93732 1.02619 1.02364 1.21917 0.97148 0.95225 1.02993 1.21813 0.77236 0.98359 1.03730 1.47706 1.07720 1.74056 1.04257 1.21434 1.01039 0.92378 0.87910 1.21995 0.77344 0.93137 0.80701 1.90732 1.52683 1.47987 1.54637 1.45687 1.58019 1.10256 1.23766 1.21598 1.01218 0.82248 1.00732 1.21035 0.87757 0.74234 0.86363 1.90691 1.16088 1.49241 1.87525 1.21573 0.98389 1.03239 0.91310 1.17992 0.92901 0.96010 0.89026 0.94531 1.20778 0.95097 0.92557 1.41810 0.96159 1.25733 0.98091 0.98657 0.95330 1.70077 1.09771 1.28501 1.51642 0.86051 0.79201 0.82005 0.77459 1.21394 1.14170 1.22244 1.20460 0.94549 0.93538 0.97814 1.20970 0.97488 0.97978 0.97464 1.21369 0.99918 0.98730 0.94356 1.21340 0.99894 0.93709 1.00640 1.21354 0.96824 1.00091 0.95718 1.21260 1.01112 0.97551 0.96758 0.91694 0.92813 0.91446 0.92414 0.90264 0.89496 0.91123 0.82608 0.87623 0.74198 0.95401 0.92829 0.86404 0.90150 0.87672 0.93397 0.88243 0.84566 0.83429 0.83859 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.13 -2.30 6.26 30.59 0.19 -2.11 16 3 C 0.11 2.61 5.21 86.38 0.45 3.06 16 4 N -0.60 -19.21 1.96 -826.16 -1.62 -20.83 16 5 C 0.10 2.55 5.89 85.63 0.50 3.05 16 6 C 0.48 15.33 7.90 87.66 0.69 16.02 16 7 O -0.58 -25.77 16.43 -3.04 -0.05 -25.82 16 8 N -0.72 -16.04 5.71 -484.52 -2.77 -18.81 16 9 C 0.09 1.84 10.70 127.77 1.37 3.21 16 10 C 0.52 22.17 7.43 87.66 0.65 22.82 16 11 O -0.56 -29.87 14.60 -3.04 -0.04 -29.91 16 12 C -0.11 -4.28 3.52 29.85 0.11 -4.17 16 13 C 0.06 2.91 1.17 -12.29 -0.01 2.90 16 14 H 0.04 1.85 4.94 -2.39 -0.01 1.84 16 15 C -0.46 -28.35 6.88 25.60 0.18 -28.18 16 16 H 0.02 1.40 8.06 -2.91 -0.02 1.37 16 17 C 0.02 1.11 5.47 84.65 0.46 1.57 16 18 N -0.96 -66.33 13.96 21.45 0.30 -66.03 16 19 Si 0.93 49.57 27.00 68.60 1.85 51.42 16 20 H -0.29 -15.69 7.11 99.48 0.71 -14.98 16 21 H -0.22 -10.29 4.72 99.48 0.47 -9.82 16 22 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 23 C -0.06 -2.69 4.65 -19.87 -0.09 -2.79 16 24 C -0.12 -4.88 8.93 22.27 0.20 -4.68 16 25 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 26 C -0.14 -3.93 10.05 22.27 0.22 -3.71 16 27 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 28 C -0.15 -5.55 8.70 22.27 0.19 -5.36 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.14 7.22 -2.38 -0.02 1.12 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.79 8.07 -2.39 -0.02 1.77 16 35 H 0.07 1.84 6.44 -2.39 -0.02 1.83 16 36 H 0.16 2.15 8.07 -2.39 -0.02 2.13 16 37 H 0.11 2.90 7.42 -2.39 -0.02 2.88 16 38 H 0.42 5.45 8.83 -92.70 -0.82 4.64 16 39 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.08 3.31 7.31 -2.38 -0.02 3.29 16 43 H 0.11 3.42 7.18 -2.39 -0.02 3.40 16 44 H 0.26 16.88 8.31 -92.71 -0.77 16.11 16 45 H 0.10 4.31 7.87 -2.91 -0.02 4.29 16 46 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 47 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 48 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 49 H 0.11 4.11 7.12 -2.91 -0.02 4.09 16 Total: -1.00 -95.08 399.37 3.83 -91.25 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.11 Total: 25.68 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 6.27 Total: -6.95 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -4.09 Total: -105.67 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -0.09 Total: -55.73 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 1.85 Total: 51.42 kcal Total: -95.08 3.83 -91.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354831529.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.350 kcal (2) G-P(sol) polarization free energy of solvation -95.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds