Wall clock time and date at job start Tue Mar 31 2020 16:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47280 * 2 1 4 4 N 1.46494 * 109.47567 * 180.02562 * 3 2 1 5 5 C 1.46498 * 120.00046 * 270.00006 * 4 3 2 6 6 C 1.50692 * 109.47120 * 269.99630 * 5 4 3 7 7 O 1.21280 * 120.00156 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99903 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99755 * 180.02562 * 8 6 5 10 10 C 1.34777 * 120.00053 * 89.99585 * 4 3 2 11 11 O 1.21281 * 120.00154 * 180.02562 * 10 4 3 12 12 C 1.50699 * 119.99832 * 0.27946 * 10 4 3 13 13 C 1.53010 * 109.47135 * 179.72530 * 12 10 4 14 14 H 1.09005 * 109.46912 * 304.99877 * 13 12 10 15 15 C 1.50696 * 109.47034 * 64.99653 * 13 12 10 16 16 H 1.08001 * 120.00351 * 234.67562 * 15 13 12 17 17 C 1.37875 * 119.99792 * 54.68322 * 15 13 12 18 18 N 1.31513 * 120.00244 * 4.89230 * 17 15 13 19 19 Si 1.86799 * 119.99932 * 184.89053 * 17 15 13 20 20 H 1.48503 * 109.47005 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47359 * 119.99759 * 19 17 15 22 22 H 1.48500 * 109.47357 * 239.99888 * 19 17 15 23 23 C 1.50695 * 109.47293 * 185.00355 * 13 12 10 24 24 C 1.38229 * 120.00343 * 151.48460 * 23 13 12 25 25 C 1.38235 * 120.00048 * 179.78485 * 24 23 13 26 26 C 1.38231 * 120.00155 * 0.44059 * 25 24 23 27 27 C 1.38237 * 120.00039 * 359.81682 * 26 25 24 28 28 C 1.38234 * 119.99735 * 359.97184 * 27 26 25 29 29 H 1.08995 * 109.46996 * 299.99918 * 1 2 3 30 30 H 1.08997 * 109.47372 * 59.99908 * 1 2 3 31 31 H 1.09007 * 109.47273 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46873 * 239.99569 * 2 1 3 33 33 H 1.08997 * 109.47372 * 120.00091 * 2 1 3 34 34 H 1.09003 * 109.47312 * 59.99548 * 3 2 1 35 35 H 1.09005 * 109.46748 * 300.00122 * 3 2 1 36 36 H 1.09002 * 109.47284 * 30.00157 * 5 4 3 37 37 H 1.09009 * 109.47180 * 149.99610 * 5 4 3 38 38 H 0.96997 * 120.00132 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.47542 * 59.99639 * 9 8 6 40 40 H 1.08998 * 109.46802 * 179.97438 * 9 8 6 41 41 H 1.09002 * 109.46842 * 299.99535 * 9 8 6 42 42 H 1.09000 * 109.47186 * 299.71782 * 12 10 4 43 43 H 1.08993 * 109.47238 * 59.72643 * 12 10 4 44 44 H 0.96998 * 120.00245 * 180.02562 * 18 17 15 45 45 H 1.08004 * 120.00027 * 359.97438 * 24 23 13 46 46 H 1.08007 * 119.99924 * 180.27398 * 25 24 23 47 47 H 1.08001 * 120.00499 * 179.83293 * 26 25 24 48 48 H 1.08002 * 120.00576 * 180.02562 * 27 26 25 49 49 H 1.08008 * 119.99962 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4423 1.2678 6 6 4.4893 2.8630 1.7028 7 8 4.0954 3.7849 1.0204 8 7 5.1529 3.1091 2.8499 9 6 5.3967 4.4903 3.2732 10 6 4.1784 1.4426 -1.1681 11 8 5.3912 1.4422 -1.1686 12 6 3.4243 1.4490 -2.4729 13 6 4.4181 1.4547 -3.6363 14 1 5.1023 2.2961 -3.5255 15 6 5.2009 0.1671 -3.6345 16 1 6.2806 0.1914 -3.6194 17 6 4.5389 -1.0422 -3.6522 18 7 3.2292 -1.0732 -3.7678 19 14 5.5021 -2.6365 -3.5121 20 1 6.9505 -2.3309 -3.3930 21 1 5.0534 -3.3819 -2.3087 22 1 5.2682 -3.4642 -4.7227 23 6 3.6682 1.5851 -4.9369 24 6 4.2719 2.1859 -6.0256 25 6 3.5855 2.3015 -7.2199 26 6 2.2923 1.8243 -7.3229 27 6 1.6866 1.2281 -6.2326 28 6 2.3745 1.1087 -5.0396 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9562 -0.8900 36 1 3.6493 0.9283 2.0276 37 1 5.1904 0.9285 1.1370 38 1 5.4683 2.3718 3.3956 39 1 4.4442 5.0037 3.4046 40 1 5.9422 4.4902 4.2168 41 1 5.9849 5.0047 2.5132 42 1 2.7977 0.5593 -2.5348 43 1 2.7977 2.3393 -2.5260 44 1 2.7634 -1.9240 -3.7799 45 1 5.2809 2.5624 -5.9440 46 1 4.0588 2.7670 -8.0719 47 1 1.7551 1.9169 -8.2552 48 1 0.6764 0.8549 -6.3131 49 1 1.9015 0.6425 -4.1878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354831530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:28 Heat of formation + Delta-G solvation = -45.680794 kcal Electronic energy + Delta-G solvation = -29904.990463 eV Core-core repulsion = 26025.126346 eV Total energy + Delta-G solvation = -3879.864118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -39.94241 -38.72868 -37.94265 -35.65887 -34.50467 -34.23301 -32.55286 -31.05263 -29.83148 -29.41674 -28.06272 -26.30407 -25.94925 -24.68973 -22.50101 -21.48110 -21.32528 -20.64621 -19.70094 -18.35423 -17.20336 -16.67275 -16.39992 -15.95460 -15.53491 -15.09145 -14.98939 -14.84846 -14.32889 -14.27284 -13.81745 -13.65561 -13.33324 -13.17566 -13.14467 -12.80395 -12.52136 -12.38129 -12.17927 -11.93872 -11.85129 -11.59093 -11.51150 -11.39263 -11.22723 -11.11842 -10.87986 -10.72689 -10.52284 -10.25056 -10.11996 -9.91369 -9.88363 -9.22860 -9.14136 -9.11777 -8.73740 -8.38937 -8.10418 -7.75321 -7.38652 -5.93579 -4.02828 2.54986 2.63688 2.77520 3.06964 3.29881 3.38326 3.45835 3.62947 3.83536 4.45911 4.85991 5.02963 5.08286 5.13556 5.18898 5.28711 5.33596 5.40971 5.48511 5.57110 5.62355 5.69551 5.85784 5.87077 5.94178 6.00906 6.02836 6.08082 6.19793 6.36956 6.37775 6.45642 6.51290 6.58779 6.67345 6.75825 6.83349 6.96770 7.20081 7.22624 7.31807 7.48564 7.53488 7.60277 7.73593 7.97482 8.06461 8.19285 8.23411 8.32324 8.40037 8.93678 9.20579 9.59654 11.00364 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.004156 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.217906 B = 6736.147926 C = 7036.189263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.122 3.878 4 N -0.611 5.611 5 C 0.100 3.900 6 C 0.495 3.505 7 O -0.525 6.525 8 N -0.742 5.742 9 C 0.090 3.910 10 C 0.534 3.466 11 O -0.525 6.525 12 C -0.134 4.134 13 C 0.086 3.914 14 H 0.036 0.964 15 C -0.466 4.466 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.286 1.286 23 C -0.025 4.025 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.154 4.154 27 C -0.143 4.143 28 C -0.068 4.068 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.400 0.600 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.135 0.865 43 H 0.052 0.948 44 H 0.259 0.741 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 4.096 11.924 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C -0.002 4.002 4 N -0.346 5.346 5 C -0.028 4.028 6 C 0.280 3.720 7 O -0.399 6.399 8 N -0.396 5.396 9 C -0.055 4.055 10 C 0.325 3.675 11 O -0.399 6.399 12 C -0.174 4.174 13 C 0.067 3.933 14 H 0.054 0.946 15 C -0.504 4.504 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.213 1.213 23 C -0.026 4.026 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.173 4.173 27 C -0.161 4.161 28 C -0.086 4.086 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.233 0.767 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.153 0.847 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.352 4.642 11.364 13.024 hybrid contribution 0.651 -1.447 0.365 1.628 sum -3.700 3.195 11.729 12.707 Atomic orbital electron populations 1.21663 0.95553 1.01605 1.01537 1.22022 0.95749 0.97500 1.03350 1.21493 0.79409 0.96447 1.02814 1.47765 1.06266 1.76155 1.04431 1.21093 1.00498 0.92819 0.88409 1.21627 0.77239 0.92993 0.80168 1.90696 1.50024 1.46316 1.52905 1.45840 1.59845 1.08956 1.24976 1.21467 1.01225 0.83114 0.99655 1.21183 0.88194 0.73138 0.84950 1.90593 1.14416 1.48025 1.86881 1.21959 1.00539 1.03587 0.91282 1.17666 0.92042 0.96990 0.86637 0.94571 1.21015 0.93072 0.89366 1.46954 0.92320 1.24862 0.94992 0.98740 0.95292 1.69691 1.06646 1.25178 1.51331 0.86561 0.80635 0.83737 0.77321 1.19904 1.21234 1.21284 1.20326 0.93114 0.92133 0.97013 1.20900 0.99172 1.01593 0.93369 1.20791 0.95311 1.02691 0.97182 1.20755 0.95798 1.02762 0.97957 1.21039 0.99294 1.01387 0.94429 1.21350 0.94371 0.95090 0.97806 0.93321 0.92298 0.92761 0.89881 0.92517 0.91697 0.89926 0.88467 0.87169 0.76682 0.92543 0.90985 0.92391 0.84723 0.92928 0.93070 0.87709 0.88141 0.88346 0.88114 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.28 16 2 C -0.15 -2.01 6.26 -26.73 -0.17 -2.18 16 3 C 0.12 1.78 5.22 -4.05 -0.02 1.76 16 4 N -0.61 -10.73 1.96 -175.07 -0.34 -11.07 16 5 C 0.10 1.43 5.89 -5.20 -0.03 1.39 16 6 C 0.49 7.46 7.90 -10.99 -0.09 7.37 16 7 O -0.52 -10.27 16.43 5.56 0.09 -10.18 16 8 N -0.74 -7.94 5.71 -67.08 -0.38 -8.33 16 9 C 0.09 0.85 10.70 59.85 0.64 1.49 16 10 C 0.53 11.82 7.42 -10.99 -0.08 11.74 16 11 O -0.53 -13.35 14.56 5.56 0.08 -13.27 16 12 C -0.13 -2.97 2.63 -27.88 -0.07 -3.05 16 13 C 0.09 2.13 1.97 -92.92 -0.18 1.94 16 14 H 0.04 0.93 7.91 -51.93 -0.41 0.52 16 15 C -0.47 -12.60 7.27 -34.44 -0.25 -12.85 16 16 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 17 C 0.06 1.58 5.12 -17.82 -0.09 1.49 16 18 N -0.89 -22.27 7.99 55.43 0.44 -21.83 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C -0.03 -0.59 4.69 -104.63 -0.49 -1.08 16 24 C -0.13 -2.91 9.71 -39.59 -0.38 -3.30 16 25 C -0.14 -2.80 10.05 -39.59 -0.40 -3.20 16 26 C -0.15 -2.97 10.05 -39.58 -0.40 -3.37 16 27 C -0.14 -2.89 10.05 -39.58 -0.40 -3.29 16 28 C -0.07 -1.51 7.45 -39.58 -0.30 -1.80 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 32 H 0.08 1.40 7.25 -51.93 -0.38 1.02 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 36 H 0.10 1.00 8.07 -51.93 -0.42 0.58 16 37 H 0.11 1.65 7.42 -51.92 -0.39 1.27 16 38 H 0.40 2.87 8.83 -40.82 -0.36 2.51 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.14 3.05 3.78 -51.93 -0.20 2.85 16 43 H 0.05 1.10 7.40 -51.93 -0.38 0.71 16 44 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 45 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 46 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 47 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 48 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 49 H 0.14 3.13 5.18 -52.48 -0.27 2.86 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -32.90 395.47 -9.26 -42.16 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.75 Total: 8.46 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.34 Total: -8.21 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.28 Total: -41.22 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.45 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.90 -9.26 -42.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354831530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.519 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds