Wall clock time and date at job start Tue Mar 31 2020 16:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47280 * 2 1 4 4 N 1.46494 * 109.47567 * 180.02562 * 3 2 1 5 5 C 1.46498 * 120.00046 * 270.00006 * 4 3 2 6 6 C 1.50692 * 109.47120 * 269.99630 * 5 4 3 7 7 O 1.21280 * 120.00156 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99903 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99755 * 180.02562 * 8 6 5 10 10 C 1.34777 * 120.00053 * 89.99585 * 4 3 2 11 11 O 1.21281 * 120.00154 * 180.02562 * 10 4 3 12 12 C 1.50699 * 119.99832 * 0.27946 * 10 4 3 13 13 C 1.53010 * 109.47135 * 179.72530 * 12 10 4 14 14 H 1.09005 * 109.46912 * 304.99877 * 13 12 10 15 15 C 1.50696 * 109.47034 * 64.99653 * 13 12 10 16 16 H 1.08001 * 120.00351 * 234.67562 * 15 13 12 17 17 C 1.37875 * 119.99792 * 54.68322 * 15 13 12 18 18 N 1.31513 * 120.00244 * 4.89230 * 17 15 13 19 19 Si 1.86799 * 119.99932 * 184.89053 * 17 15 13 20 20 H 1.48503 * 109.47005 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47359 * 119.99759 * 19 17 15 22 22 H 1.48500 * 109.47357 * 239.99888 * 19 17 15 23 23 C 1.50695 * 109.47293 * 185.00355 * 13 12 10 24 24 C 1.38229 * 120.00343 * 151.48460 * 23 13 12 25 25 C 1.38235 * 120.00048 * 179.78485 * 24 23 13 26 26 C 1.38231 * 120.00155 * 0.44059 * 25 24 23 27 27 C 1.38237 * 120.00039 * 359.81682 * 26 25 24 28 28 C 1.38234 * 119.99735 * 359.97184 * 27 26 25 29 29 H 1.08995 * 109.46996 * 299.99918 * 1 2 3 30 30 H 1.08997 * 109.47372 * 59.99908 * 1 2 3 31 31 H 1.09007 * 109.47273 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46873 * 239.99569 * 2 1 3 33 33 H 1.08997 * 109.47372 * 120.00091 * 2 1 3 34 34 H 1.09003 * 109.47312 * 59.99548 * 3 2 1 35 35 H 1.09005 * 109.46748 * 300.00122 * 3 2 1 36 36 H 1.09002 * 109.47284 * 30.00157 * 5 4 3 37 37 H 1.09009 * 109.47180 * 149.99610 * 5 4 3 38 38 H 0.96997 * 120.00132 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.47542 * 59.99639 * 9 8 6 40 40 H 1.08998 * 109.46802 * 179.97438 * 9 8 6 41 41 H 1.09002 * 109.46842 * 299.99535 * 9 8 6 42 42 H 1.09000 * 109.47186 * 299.71782 * 12 10 4 43 43 H 1.08993 * 109.47238 * 59.72643 * 12 10 4 44 44 H 0.96998 * 120.00245 * 180.02562 * 18 17 15 45 45 H 1.08004 * 120.00027 * 359.97438 * 24 23 13 46 46 H 1.08007 * 119.99924 * 180.27398 * 25 24 23 47 47 H 1.08001 * 120.00499 * 179.83293 * 26 25 24 48 48 H 1.08002 * 120.00576 * 180.02562 * 27 26 25 49 49 H 1.08008 * 119.99962 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4423 1.2678 6 6 4.4893 2.8630 1.7028 7 8 4.0954 3.7849 1.0204 8 7 5.1529 3.1091 2.8499 9 6 5.3967 4.4903 3.2732 10 6 4.1784 1.4426 -1.1681 11 8 5.3912 1.4422 -1.1686 12 6 3.4243 1.4490 -2.4729 13 6 4.4181 1.4547 -3.6363 14 1 5.1023 2.2961 -3.5255 15 6 5.2009 0.1671 -3.6345 16 1 6.2806 0.1914 -3.6194 17 6 4.5389 -1.0422 -3.6522 18 7 3.2292 -1.0732 -3.7678 19 14 5.5021 -2.6365 -3.5121 20 1 6.9505 -2.3309 -3.3930 21 1 5.0534 -3.3819 -2.3087 22 1 5.2682 -3.4642 -4.7227 23 6 3.6682 1.5851 -4.9369 24 6 4.2719 2.1859 -6.0256 25 6 3.5855 2.3015 -7.2199 26 6 2.2923 1.8243 -7.3229 27 6 1.6866 1.2281 -6.2326 28 6 2.3745 1.1087 -5.0396 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9562 -0.8900 36 1 3.6493 0.9283 2.0276 37 1 5.1904 0.9285 1.1370 38 1 5.4683 2.3718 3.3956 39 1 4.4442 5.0037 3.4046 40 1 5.9422 4.4902 4.2168 41 1 5.9849 5.0047 2.5132 42 1 2.7977 0.5593 -2.5348 43 1 2.7977 2.3393 -2.5260 44 1 2.7634 -1.9240 -3.7799 45 1 5.2809 2.5624 -5.9440 46 1 4.0588 2.7670 -8.0719 47 1 1.7551 1.9169 -8.2552 48 1 0.6764 0.8549 -6.3131 49 1 1.9015 0.6425 -4.1878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354831530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:26 Heat of formation + Delta-G solvation = -65.304422 kcal Electronic energy + Delta-G solvation = -29905.841408 eV Core-core repulsion = 26025.126346 eV Total energy + Delta-G solvation = -3880.715062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.33164 -40.22725 -39.52426 -37.09287 -36.07059 -35.57952 -33.75969 -32.96293 -31.45376 -30.81356 -29.55357 -27.83101 -27.16853 -26.08588 -24.22942 -23.01051 -22.55823 -21.89950 -21.30390 -19.89523 -18.43363 -18.27003 -18.04935 -17.37457 -17.07960 -16.85629 -16.23703 -16.16048 -15.88016 -15.49287 -15.43420 -15.22744 -14.86495 -14.53452 -14.38680 -14.14679 -13.99092 -13.78958 -13.40750 -13.29354 -13.15649 -13.10610 -12.95901 -12.91457 -12.79638 -12.68976 -12.47760 -12.29746 -12.10739 -11.86307 -11.69073 -11.49966 -11.20480 -11.05333 -11.03447 -10.58787 -10.27873 -10.14221 -9.53143 -9.40355 -9.11468 -7.91563 -6.07586 0.88563 1.00134 1.35831 1.39765 1.50403 1.59745 1.85711 2.09426 2.46967 2.55235 3.21495 3.37697 3.86020 3.89619 4.05085 4.21848 4.31821 4.32903 4.40951 4.45918 4.47279 4.51339 4.55010 4.60316 4.60878 4.67973 4.76953 4.81584 4.90919 4.91612 5.03653 5.08085 5.14370 5.23195 5.32381 5.37889 5.43512 5.52142 5.53897 5.61530 5.67533 5.74051 5.91028 5.94618 6.09029 6.36305 6.42407 6.54499 6.55882 6.58333 6.85005 7.25802 7.52441 7.55140 8.98299 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.004156 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.217906 B = 6736.147926 C = 7036.189263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.138 4.138 3 C 0.119 3.881 4 N -0.607 5.607 5 C 0.095 3.905 6 C 0.491 3.509 7 O -0.579 6.579 8 N -0.723 5.723 9 C 0.086 3.914 10 C 0.526 3.474 11 O -0.571 6.571 12 C -0.121 4.121 13 C 0.088 3.912 14 H 0.003 0.997 15 C -0.491 4.491 16 H 0.024 0.976 17 C 0.038 3.962 18 N -0.881 5.881 19 Si 0.930 3.070 20 H -0.290 1.290 21 H -0.275 1.275 22 H -0.281 1.281 23 C -0.051 4.051 24 C -0.155 4.155 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.080 4.080 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.420 0.580 39 H 0.052 0.948 40 H 0.115 0.885 41 H 0.036 0.964 42 H 0.134 0.866 43 H 0.058 0.942 44 H 0.263 0.737 45 H 0.099 0.901 46 H 0.132 0.868 47 H 0.138 0.862 48 H 0.129 0.871 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.741 3.366 12.845 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C -0.004 4.004 4 N -0.340 5.340 5 C -0.032 4.032 6 C 0.277 3.723 7 O -0.458 6.458 8 N -0.377 5.377 9 C -0.058 4.058 10 C 0.317 3.683 11 O -0.450 6.450 12 C -0.161 4.161 13 C 0.068 3.932 14 H 0.021 0.979 15 C -0.529 4.529 16 H 0.043 0.957 17 C -0.161 4.161 18 N -0.520 5.520 19 Si 0.758 3.242 20 H -0.216 1.216 21 H -0.201 1.201 22 H -0.207 1.207 23 C -0.051 4.051 24 C -0.173 4.173 25 C -0.157 4.157 26 C -0.166 4.166 27 C -0.163 4.163 28 C -0.098 4.098 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.165 0.835 37 H 0.120 0.880 38 H 0.257 0.743 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.055 0.945 42 H 0.151 0.849 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.117 0.883 46 H 0.150 0.850 47 H 0.155 0.845 48 H 0.147 0.853 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.511 3.892 12.359 14.501 hybrid contribution 1.308 -1.158 0.116 1.750 sum -5.203 2.734 12.475 13.790 Atomic orbital electron populations 1.21628 0.93460 1.02305 1.02429 1.21910 0.97465 0.96120 1.02212 1.21699 0.77539 0.97540 1.03583 1.47700 1.07594 1.74300 1.04383 1.21397 1.00785 0.93076 0.87937 1.21724 0.77219 0.92551 0.80819 1.90679 1.52665 1.47624 1.54798 1.45709 1.57844 1.10476 1.23645 1.21630 1.01317 0.81927 1.00897 1.21161 0.87696 0.73066 0.86346 1.90559 1.16122 1.50501 1.87770 1.21760 0.99744 1.03544 0.91077 1.17538 0.92129 0.94714 0.88775 0.97892 1.20877 0.91624 0.91175 1.49202 0.95717 1.25196 0.95918 0.99973 0.95048 1.69764 1.06440 1.25587 1.50166 0.85940 0.78898 0.81619 0.77738 1.21551 1.20069 1.20689 1.20298 0.94076 0.94087 0.96674 1.21068 0.99457 1.02415 0.94378 1.21146 0.95671 1.01940 0.96980 1.21202 0.95461 1.00855 0.99073 1.21376 1.00434 1.00800 0.93712 1.21307 0.94011 0.95729 0.98776 0.91029 0.92835 0.92151 0.93607 0.90989 0.88938 0.91165 0.83520 0.88030 0.74323 0.92879 0.86643 0.94532 0.84909 0.92397 0.92739 0.88294 0.85023 0.84451 0.85323 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.91 71.98 0.71 -2.15 16 2 C -0.14 -3.59 6.26 30.59 0.19 -3.40 16 3 C 0.12 3.38 5.22 86.38 0.45 3.83 16 4 N -0.61 -21.50 1.96 -826.18 -1.62 -23.12 16 5 C 0.09 2.62 5.89 85.63 0.50 3.13 16 6 C 0.49 14.57 7.90 87.65 0.69 15.27 16 7 O -0.58 -23.10 16.43 -3.03 -0.05 -23.15 16 8 N -0.72 -14.27 5.71 -484.52 -2.77 -17.04 16 9 C 0.09 1.50 10.70 127.77 1.37 2.87 16 10 C 0.53 24.47 7.42 87.66 0.65 25.12 16 11 O -0.57 -30.97 14.56 -3.03 -0.04 -31.02 16 12 C -0.12 -5.70 2.63 29.85 0.08 -5.62 16 13 C 0.09 4.64 1.97 -12.29 -0.02 4.61 16 14 H 0.00 0.15 7.91 -2.38 -0.02 0.13 16 15 C -0.49 -28.16 7.27 25.60 0.19 -27.97 16 16 H 0.02 1.53 7.82 -2.91 -0.02 1.51 16 17 C 0.04 2.06 5.12 84.65 0.43 2.49 16 18 N -0.88 -44.68 7.99 21.45 0.17 -44.51 16 19 Si 0.93 44.43 29.54 68.60 2.03 46.45 16 20 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 C -0.05 -2.47 4.69 -19.87 -0.09 -2.56 16 24 C -0.15 -7.00 9.71 22.27 0.22 -6.79 16 25 C -0.14 -5.29 10.05 22.27 0.22 -5.07 16 26 C -0.15 -5.24 10.05 22.27 0.22 -5.02 16 27 C -0.15 -5.56 10.05 22.27 0.22 -5.34 16 28 C -0.08 -3.57 7.45 22.27 0.17 -3.40 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.05 1.54 7.25 -2.39 -0.02 1.53 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 2.15 8.07 -2.39 -0.02 2.13 16 35 H 0.07 2.17 6.43 -2.38 -0.02 2.16 16 36 H 0.15 2.54 8.07 -2.39 -0.02 2.52 16 37 H 0.10 3.05 7.42 -2.38 -0.02 3.03 16 38 H 0.42 4.91 8.83 -92.71 -0.82 4.09 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.13 6.27 3.78 -2.39 -0.01 6.26 16 43 H 0.06 2.57 7.40 -2.39 -0.02 2.55 16 44 H 0.26 12.75 8.31 -92.71 -0.77 11.98 16 45 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 46 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 47 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 48 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 49 H 0.13 5.97 5.18 -2.91 -0.02 5.96 16 Total: -1.00 -76.49 395.47 4.05 -72.44 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.13 Total: 29.93 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 6.20 Total: -9.99 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -4.22 Total: -84.67 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.09 Total: -54.17 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -76.49 4.05 -72.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354831530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.136 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds