Wall clock time and date at job start Tue Mar 31 2020 17:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46959 * 2 1 4 4 O 1.42907 * 109.46883 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46685 * 119.99689 * 2 1 3 6 6 N 1.46495 * 109.47497 * 299.99866 * 5 2 1 7 7 C 1.34779 * 120.00215 * 180.02562 * 6 5 2 8 8 O 1.21588 * 119.99918 * 4.68983 * 7 6 5 9 9 N 1.34778 * 119.99733 * 184.68795 * 7 6 5 10 10 C 1.46498 * 119.99663 * 184.73370 * 9 7 6 11 11 C 1.52998 * 109.47310 * 184.70876 * 10 9 7 12 12 C 1.50704 * 115.54563 * 294.79303 * 11 10 9 13 13 H 1.08007 * 119.99953 * 121.64940 * 12 11 10 14 14 C 1.37876 * 120.00263 * 301.36461 * 12 11 10 15 15 N 1.31508 * 120.00236 * 173.19361 * 14 12 11 16 16 Si 1.86808 * 119.99838 * 353.19801 * 14 12 11 17 17 H 1.48501 * 109.46996 * 94.23909 * 16 14 12 18 18 H 1.48498 * 109.46839 * 214.23956 * 16 14 12 19 19 H 1.48499 * 109.46858 * 334.23980 * 16 14 12 20 20 C 1.53001 * 117.50012 * 80.46176 * 11 10 9 21 21 C 1.53001 * 117.50291 * 149.12365 * 11 10 9 22 22 C 1.50695 * 109.47107 * 239.99791 * 2 1 3 23 23 C 1.38243 * 119.99776 * 239.72989 * 22 2 1 24 24 C 1.38234 * 119.99731 * 179.81442 * 23 22 2 25 25 C 1.38236 * 120.00229 * 0.39257 * 24 23 22 26 26 C 1.38243 * 119.99797 * 359.85738 * 25 24 23 27 27 C 1.38229 * 120.00136 * 59.99972 * 22 2 1 28 28 H 1.08998 * 109.47261 * 300.00115 * 1 2 3 29 29 H 1.08993 * 109.46699 * 60.00235 * 1 2 3 30 30 H 1.08994 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47360 * 299.99480 * 3 2 1 32 32 H 1.08998 * 109.47228 * 59.99865 * 3 2 1 33 33 H 0.96701 * 113.99494 * 180.02562 * 4 3 2 34 34 H 1.09007 * 109.46955 * 180.02562 * 5 2 1 35 35 H 1.08994 * 109.47280 * 60.00514 * 5 2 1 36 36 H 0.97004 * 120.00011 * 0.02562 * 6 5 2 37 37 H 0.96995 * 120.00503 * 4.73942 * 9 7 6 38 38 H 1.08998 * 109.47069 * 64.70597 * 10 9 7 39 39 H 1.09003 * 109.47733 * 304.70710 * 10 9 7 40 40 H 0.97001 * 120.00265 * 180.02562 * 15 14 12 41 41 H 1.09000 * 117.49568 * 215.00735 * 20 11 10 42 42 H 1.08993 * 117.49839 * 0.02562 * 20 11 10 43 43 H 1.09005 * 117.49511 * 359.97403 * 21 11 10 44 44 H 1.08997 * 117.49732 * 144.97003 * 21 11 10 45 45 H 1.07994 * 119.99881 * 359.97438 * 23 22 2 46 46 H 1.08005 * 120.00167 * 180.22572 * 24 23 22 47 47 H 1.08004 * 120.00411 * 179.83694 * 25 24 23 48 48 H 1.07998 * 119.99893 * 179.97438 * 26 25 24 49 49 H 1.07998 * 120.00372 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -0.0306 2.4454 7 6 1.8776 -0.4907 3.6696 8 8 2.6454 -1.4267 3.7827 9 7 1.3525 0.0867 4.7684 10 6 1.7853 -0.3440 6.1000 11 6 0.9581 0.3799 7.1642 12 6 1.1498 1.8731 7.2318 13 1 0.3051 2.5327 7.0979 14 6 2.4026 2.3972 7.4705 15 7 2.5970 3.6958 7.3971 16 14 3.8238 1.2626 7.8979 17 1 4.5732 0.9209 6.6622 18 1 4.7315 1.9452 8.8546 19 1 3.2962 0.0200 8.5166 20 6 -0.4383 -0.1675 7.4668 21 6 0.6949 -0.3588 8.4779 22 6 2.0324 -0.7104 -1.2304 23 6 2.8318 -1.8311 -1.1035 24 6 3.2894 -2.4851 -2.2321 25 6 2.9544 -2.0136 -3.4877 26 6 2.1593 -0.8899 -3.6146 27 6 1.6985 -0.2382 -2.4859 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.8623 2.3259 0.0010 34 1 3.1300 -0.7208 1.2496 35 1 1.6767 -1.7488 1.2493 36 1 0.9937 0.7579 2.3564 37 1 0.6880 0.7874 4.6775 38 1 2.8401 -0.1043 6.2344 39 1 1.6420 -1.4201 6.1983 40 1 3.4785 4.0645 7.5646 41 1 -1.2182 0.5524 7.7148 42 1 -0.7673 -1.0436 6.9081 43 1 1.1109 -1.3608 8.5839 44 1 0.6610 0.2352 9.3912 45 1 3.0966 -2.1972 -0.1226 46 1 3.9109 -3.3628 -2.1330 47 1 3.3141 -2.5230 -4.3695 48 1 1.8979 -0.5213 -4.5955 49 1 1.0772 0.6396 -2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355832747.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:48 Heat of formation + Delta-G solvation = -29.401837 kcal Electronic energy + Delta-G solvation = -28894.643970 eV Core-core repulsion = 25015.485761 eV Total energy + Delta-G solvation = -3879.158209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.43605 -39.26166 -37.60149 -36.97018 -35.36852 -33.38213 -32.94051 -32.20332 -31.15904 -29.74202 -27.40328 -26.40500 -25.97388 -24.77399 -22.95597 -22.29725 -21.58914 -20.39195 -19.46203 -19.30281 -18.00352 -17.46327 -17.00518 -16.64881 -15.71421 -15.57296 -15.27509 -15.11335 -14.85684 -14.57066 -14.34332 -14.00878 -13.86631 -13.62036 -13.38045 -13.13828 -13.06787 -12.90187 -12.66857 -12.46494 -12.24645 -12.18644 -12.04371 -11.61889 -11.43197 -11.04836 -10.96346 -10.66276 -10.61355 -10.55260 -10.23466 -10.10304 -9.78476 -9.49145 -9.18676 -9.05460 -8.87126 -8.83976 -8.76617 -8.49265 -8.08384 -6.19274 -4.20561 1.22210 1.27678 3.14293 3.31331 3.40491 3.46101 3.63762 3.75238 3.98853 4.30611 4.38804 4.58243 4.66326 4.74601 4.84228 4.85705 4.97301 5.01560 5.10764 5.23020 5.23555 5.30309 5.30905 5.41031 5.54578 5.61217 5.70085 5.78218 5.87096 5.88584 5.90051 5.97877 6.05168 6.16068 6.28359 6.32008 6.37864 6.45903 6.47874 6.52095 6.71890 6.77856 6.85985 6.94154 7.08879 7.23433 7.45202 7.52833 7.67156 8.40267 8.59586 8.82523 9.14506 9.45118 10.91615 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.002753 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.467553 B =10167.053569 C =10423.515593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.033 4.033 3 C 0.089 3.911 4 O -0.562 6.562 5 C 0.154 3.846 6 N -0.749 5.749 7 C 0.701 3.299 8 O -0.604 6.604 9 N -0.719 5.719 10 C 0.172 3.828 11 C -0.016 4.016 12 C -0.489 4.489 13 H 0.077 0.923 14 C 0.084 3.916 15 N -0.892 5.892 16 Si 0.870 3.130 17 H -0.277 1.277 18 H -0.293 1.293 19 H -0.252 1.252 20 C -0.180 4.180 21 C -0.189 4.189 22 C -0.052 4.052 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.115 4.115 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.379 0.621 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.392 0.608 37 H 0.402 0.598 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.265 0.735 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.128 0.872 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -6.394 -20.777 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C 0.011 3.989 4 O -0.367 6.367 5 C 0.030 3.970 6 N -0.406 5.406 7 C 0.401 3.599 8 O -0.484 6.484 9 N -0.373 5.373 10 C 0.048 3.952 11 C -0.017 4.017 12 C -0.526 4.526 13 H 0.095 0.905 14 C -0.120 4.120 15 N -0.529 5.529 16 Si 0.698 3.302 17 H -0.204 1.204 18 H -0.220 1.220 19 H -0.176 1.176 20 C -0.218 4.218 21 C -0.227 4.227 22 C -0.053 4.053 23 C -0.131 4.131 24 C -0.135 4.135 25 C -0.146 4.146 26 C -0.139 4.139 27 C -0.133 4.133 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.226 0.774 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.227 0.773 37 H 0.236 0.764 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.146 0.854 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.010 -7.752 -20.617 22.231 hybrid contribution 0.431 0.920 0.160 1.028 sum -2.579 -6.833 -20.457 21.722 Atomic orbital electron populations 1.21862 0.92203 1.03257 1.02407 1.19792 0.96015 0.94473 0.93101 1.22177 0.82031 0.94867 0.99874 1.86519 1.18919 1.33628 1.97615 1.21151 0.99860 0.94744 0.81261 1.45076 1.57752 1.33372 1.04449 1.15971 0.80944 0.82578 0.80423 1.90863 1.40129 1.31336 1.86077 1.44971 1.45717 1.42062 1.04520 1.20926 0.97862 0.96240 0.80135 1.19605 0.94128 0.95461 0.92499 1.20244 0.95565 0.86789 1.49997 0.90451 1.24903 0.98542 0.94745 0.93788 1.69890 1.23317 1.11455 1.48204 0.87006 0.82429 0.82082 0.78677 1.20354 1.22023 1.17578 1.22770 0.92658 1.01874 1.04449 1.23061 1.03941 1.00264 0.95440 1.19446 0.97211 0.95249 0.93376 1.21237 0.97139 0.95416 0.99277 1.21153 0.99873 0.99929 0.92537 1.21122 0.99006 0.97051 0.97372 1.21061 0.98423 0.96141 0.98250 1.20877 1.00582 0.99917 0.91900 0.91612 0.91898 0.91322 0.93433 0.93003 0.77374 0.90512 0.91805 0.77326 0.76363 0.92979 0.93313 0.92476 0.89729 0.90875 0.91116 0.89295 0.85404 0.86134 0.86396 0.86331 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.11 37.16 0.30 -0.87 16 2 C -0.03 -0.34 0.45 -155.66 -0.07 -0.41 16 3 C 0.09 0.86 5.56 37.15 0.21 1.07 16 4 O -0.56 -6.45 12.61 -35.23 -0.44 -6.90 16 5 C 0.15 2.07 3.08 -4.04 -0.01 2.06 16 6 N -0.75 -10.98 4.96 -65.23 -0.32 -11.30 16 7 C 0.70 13.63 8.55 -86.92 -0.74 12.88 16 8 O -0.60 -14.02 16.33 5.29 0.09 -13.93 16 9 N -0.72 -14.13 5.48 -65.23 -0.36 -14.49 16 10 C 0.17 3.80 5.08 -4.04 -0.02 3.78 16 11 C -0.02 -0.35 0.85 -155.66 -0.13 -0.48 16 12 C -0.49 -12.76 9.19 -34.44 -0.32 -13.08 16 13 H 0.08 2.18 8.06 -52.48 -0.42 1.75 16 14 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 15 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 16 Si 0.87 21.68 24.69 -169.99 -4.20 17.48 16 17 H -0.28 -7.12 6.96 56.52 0.39 -6.73 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 19 H -0.25 -5.96 6.12 56.52 0.35 -5.61 16 20 C -0.18 -3.46 9.96 -26.69 -0.27 -3.73 16 21 C -0.19 -3.87 8.70 -26.69 -0.23 -4.10 16 22 C -0.05 -0.56 4.41 -104.63 -0.46 -1.02 16 23 C -0.11 -1.28 8.98 -39.58 -0.36 -1.63 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 26 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 27 C -0.11 -1.07 8.71 -39.59 -0.34 -1.42 16 28 H 0.06 0.52 6.86 -51.93 -0.36 0.16 16 29 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.38 7.39 -51.93 -0.38 0.00 16 32 H 0.05 0.50 6.86 -51.93 -0.36 0.14 16 33 H 0.38 2.93 9.12 45.56 0.42 3.35 16 34 H 0.08 1.22 7.04 -51.93 -0.37 0.86 16 35 H 0.06 0.88 7.53 -51.93 -0.39 0.49 16 36 H 0.39 4.78 6.19 -40.82 -0.25 4.52 16 37 H 0.40 7.27 8.36 -40.82 -0.34 6.92 16 38 H 0.05 1.28 4.25 -51.93 -0.22 1.06 16 39 H 0.05 1.04 8.06 -51.93 -0.42 0.63 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 45 H 0.13 1.51 5.90 -52.49 -0.31 1.20 16 46 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 47 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 48 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.12 0.89 7.10 -52.49 -0.37 0.52 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -33.51 388.74 -9.08 -42.59 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -6.74 Total: 15.31 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -3.74 Total: -9.31 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.09 Total: -51.11 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.36 Total: -20.83 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.20 Total: 17.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.51 -9.08 -42.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355832747.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.191 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds