Wall clock time and date at job start Tue Mar 31 2020 17:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46959 * 2 1 4 4 O 1.42907 * 109.46883 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46685 * 119.99689 * 2 1 3 6 6 N 1.46495 * 109.47497 * 299.99866 * 5 2 1 7 7 C 1.34779 * 120.00215 * 180.02562 * 6 5 2 8 8 O 1.21588 * 119.99918 * 4.68983 * 7 6 5 9 9 N 1.34778 * 119.99733 * 184.68795 * 7 6 5 10 10 C 1.46498 * 119.99663 * 184.73370 * 9 7 6 11 11 C 1.52998 * 109.47310 * 184.70876 * 10 9 7 12 12 C 1.50704 * 115.54563 * 294.79303 * 11 10 9 13 13 H 1.08007 * 119.99953 * 121.64940 * 12 11 10 14 14 C 1.37876 * 120.00263 * 301.36461 * 12 11 10 15 15 N 1.31508 * 120.00236 * 173.19361 * 14 12 11 16 16 Si 1.86808 * 119.99838 * 353.19801 * 14 12 11 17 17 H 1.48501 * 109.46996 * 94.23909 * 16 14 12 18 18 H 1.48498 * 109.46839 * 214.23956 * 16 14 12 19 19 H 1.48499 * 109.46858 * 334.23980 * 16 14 12 20 20 C 1.53001 * 117.50012 * 80.46176 * 11 10 9 21 21 C 1.53001 * 117.50291 * 149.12365 * 11 10 9 22 22 C 1.50695 * 109.47107 * 239.99791 * 2 1 3 23 23 C 1.38243 * 119.99776 * 239.72989 * 22 2 1 24 24 C 1.38234 * 119.99731 * 179.81442 * 23 22 2 25 25 C 1.38236 * 120.00229 * 0.39257 * 24 23 22 26 26 C 1.38243 * 119.99797 * 359.85738 * 25 24 23 27 27 C 1.38229 * 120.00136 * 59.99972 * 22 2 1 28 28 H 1.08998 * 109.47261 * 300.00115 * 1 2 3 29 29 H 1.08993 * 109.46699 * 60.00235 * 1 2 3 30 30 H 1.08994 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47360 * 299.99480 * 3 2 1 32 32 H 1.08998 * 109.47228 * 59.99865 * 3 2 1 33 33 H 0.96701 * 113.99494 * 180.02562 * 4 3 2 34 34 H 1.09007 * 109.46955 * 180.02562 * 5 2 1 35 35 H 1.08994 * 109.47280 * 60.00514 * 5 2 1 36 36 H 0.97004 * 120.00011 * 0.02562 * 6 5 2 37 37 H 0.96995 * 120.00503 * 4.73942 * 9 7 6 38 38 H 1.08998 * 109.47069 * 64.70597 * 10 9 7 39 39 H 1.09003 * 109.47733 * 304.70710 * 10 9 7 40 40 H 0.97001 * 120.00265 * 180.02562 * 15 14 12 41 41 H 1.09000 * 117.49568 * 215.00735 * 20 11 10 42 42 H 1.08993 * 117.49839 * 0.02562 * 20 11 10 43 43 H 1.09005 * 117.49511 * 359.97403 * 21 11 10 44 44 H 1.08997 * 117.49732 * 144.97003 * 21 11 10 45 45 H 1.07994 * 119.99881 * 359.97438 * 23 22 2 46 46 H 1.08005 * 120.00167 * 180.22572 * 24 23 22 47 47 H 1.08004 * 120.00411 * 179.83694 * 25 24 23 48 48 H 1.07998 * 119.99893 * 179.97438 * 26 25 24 49 49 H 1.07998 * 120.00372 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -0.0306 2.4454 7 6 1.8776 -0.4907 3.6696 8 8 2.6454 -1.4267 3.7827 9 7 1.3525 0.0867 4.7684 10 6 1.7853 -0.3440 6.1000 11 6 0.9581 0.3799 7.1642 12 6 1.1498 1.8731 7.2318 13 1 0.3051 2.5327 7.0979 14 6 2.4026 2.3972 7.4705 15 7 2.5970 3.6958 7.3971 16 14 3.8238 1.2626 7.8979 17 1 4.5732 0.9209 6.6622 18 1 4.7315 1.9452 8.8546 19 1 3.2962 0.0200 8.5166 20 6 -0.4383 -0.1675 7.4668 21 6 0.6949 -0.3588 8.4779 22 6 2.0324 -0.7104 -1.2304 23 6 2.8318 -1.8311 -1.1035 24 6 3.2894 -2.4851 -2.2321 25 6 2.9544 -2.0136 -3.4877 26 6 2.1593 -0.8899 -3.6146 27 6 1.6985 -0.2382 -2.4859 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.8623 2.3259 0.0010 34 1 3.1300 -0.7208 1.2496 35 1 1.6767 -1.7488 1.2493 36 1 0.9937 0.7579 2.3564 37 1 0.6880 0.7874 4.6775 38 1 2.8401 -0.1043 6.2344 39 1 1.6420 -1.4201 6.1983 40 1 3.4785 4.0645 7.5646 41 1 -1.2182 0.5524 7.7148 42 1 -0.7673 -1.0436 6.9081 43 1 1.1109 -1.3608 8.5839 44 1 0.6610 0.2352 9.3912 45 1 3.0966 -2.1972 -0.1226 46 1 3.9109 -3.3628 -2.1330 47 1 3.3141 -2.5230 -4.3695 48 1 1.8979 -0.5213 -4.5955 49 1 1.0772 0.6396 -2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355832747.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:46 Heat of formation + Delta-G solvation = -53.766236 kcal Electronic energy + Delta-G solvation = -28895.700490 eV Core-core repulsion = 25015.485761 eV Total energy + Delta-G solvation = -3880.214729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.46654 -40.55245 -38.86403 -38.24332 -36.36209 -35.00698 -34.29614 -34.11085 -31.89230 -30.50906 -28.86179 -27.70499 -27.05604 -26.36539 -23.77695 -23.23124 -23.03736 -21.85483 -21.11310 -20.34247 -19.46464 -18.40823 -18.28783 -17.86428 -17.15963 -17.07350 -16.57704 -16.18169 -16.07945 -15.62966 -15.39449 -15.29349 -15.11364 -14.91684 -14.84848 -14.41228 -14.15916 -14.09814 -13.94095 -13.86440 -13.40133 -13.17213 -13.02214 -12.84328 -12.64150 -12.47374 -12.22095 -12.16258 -12.06951 -11.72725 -11.54244 -11.40714 -11.33610 -11.04116 -10.89568 -10.71279 -10.38552 -10.28843 -9.78155 -9.63251 -9.56732 -8.32976 -6.34011 0.49743 0.54219 1.29924 1.37156 1.45992 1.74697 2.18229 2.32570 2.91019 2.93149 3.20520 3.30796 3.47066 3.56438 3.80567 3.91354 4.02573 4.12352 4.17593 4.30126 4.30690 4.32091 4.48215 4.52519 4.53592 4.55811 4.62600 4.65629 4.71654 4.78530 4.87169 4.90449 4.93292 4.99413 5.07192 5.15586 5.18801 5.26025 5.27477 5.45625 5.52018 5.61017 5.64248 5.67335 5.69138 5.72206 6.06075 6.15815 6.29910 6.71404 6.87603 7.15423 7.33380 7.61015 8.81178 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.002753 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.467553 B =10167.053569 C =10423.515593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 C 0.085 3.915 4 O -0.587 6.587 5 C 0.160 3.840 6 N -0.729 5.729 7 C 0.697 3.303 8 O -0.644 6.644 9 N -0.717 5.717 10 C 0.179 3.821 11 C -0.042 4.042 12 C -0.473 4.473 13 H 0.050 0.950 14 C 0.039 3.961 15 N -0.936 5.936 16 Si 0.916 3.084 17 H -0.294 1.294 18 H -0.296 1.296 19 H -0.230 1.230 20 C -0.152 4.152 21 C -0.185 4.185 22 C -0.063 4.063 23 C -0.139 4.139 24 C -0.129 4.129 25 C -0.132 4.132 26 C -0.122 4.122 27 C -0.118 4.118 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.407 0.593 37 H 0.409 0.591 38 H 0.024 0.976 39 H 0.058 0.942 40 H 0.264 0.736 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.129 0.871 47 H 0.140 0.860 48 H 0.145 0.855 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 -7.047 -22.405 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 C 0.007 3.993 4 O -0.395 6.395 5 C 0.035 3.965 6 N -0.386 5.386 7 C 0.397 3.603 8 O -0.527 6.527 9 N -0.371 5.371 10 C 0.054 3.946 11 C -0.043 4.043 12 C -0.510 4.510 13 H 0.068 0.932 14 C -0.160 4.160 15 N -0.575 5.575 16 Si 0.744 3.256 17 H -0.222 1.222 18 H -0.223 1.223 19 H -0.153 1.153 20 C -0.189 4.189 21 C -0.224 4.224 22 C -0.063 4.063 23 C -0.157 4.157 24 C -0.147 4.147 25 C -0.150 4.150 26 C -0.140 4.140 27 C -0.136 4.136 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.242 0.758 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.244 0.756 37 H 0.245 0.755 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.127 0.873 46 H 0.147 0.853 47 H 0.158 0.842 48 H 0.163 0.837 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.673 -8.388 -22.261 24.244 hybrid contribution 0.892 1.115 0.588 1.545 sum -3.781 -7.273 -21.673 23.171 Atomic orbital electron populations 1.21874 0.90396 1.03426 1.03787 1.19764 0.97306 0.94401 0.91129 1.22310 0.81323 0.94516 1.01119 1.86493 1.20081 1.35186 1.97723 1.21132 0.98146 0.94994 0.82189 1.44927 1.56915 1.33400 1.03347 1.16161 0.80572 0.82182 0.81417 1.90833 1.41877 1.33204 1.86786 1.44865 1.45877 1.42273 1.04054 1.20734 0.96224 0.96651 0.80991 1.19442 0.97309 0.93320 0.94207 1.20379 0.94155 0.88790 1.47687 0.93194 1.25471 1.00662 0.95432 0.94483 1.69988 1.23727 1.12967 1.50823 0.86277 0.80147 0.81551 0.77671 1.22179 1.22346 1.15279 1.22819 0.91148 1.02148 1.02783 1.23112 1.04251 1.00684 0.94311 1.19529 0.97483 0.95187 0.94133 1.21265 0.98720 0.96717 0.99043 1.21355 1.00170 1.00378 0.92818 1.21440 0.98741 0.97294 0.97555 1.21441 0.97532 0.95655 0.99342 1.21132 1.00632 1.00541 0.91287 0.91121 0.89617 0.91786 0.90809 0.92973 0.75808 0.93473 0.92487 0.75596 0.75497 0.95753 0.92421 0.92662 0.89355 0.88341 0.89158 0.89779 0.87256 0.85278 0.84189 0.83695 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.11 71.98 0.58 -1.42 16 2 C -0.03 -0.50 0.45 -52.93 -0.02 -0.52 16 3 C 0.08 1.53 5.56 71.98 0.40 1.93 16 4 O -0.59 -13.24 12.61 -148.98 -1.88 -15.12 16 5 C 0.16 4.37 3.08 86.38 0.27 4.64 16 6 N -0.73 -21.19 4.96 -478.54 -2.37 -23.57 16 7 C 0.70 27.11 8.55 179.05 1.53 28.64 16 8 O -0.64 -30.37 16.33 -3.99 -0.07 -30.44 16 9 N -0.72 -27.72 5.48 -478.54 -2.62 -30.34 16 10 C 0.18 7.69 5.08 86.38 0.44 8.13 16 11 C -0.04 -1.78 0.85 -52.93 -0.04 -1.82 16 12 C -0.47 -24.61 9.19 25.60 0.24 -24.38 16 13 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 14 C 0.04 2.15 5.46 84.66 0.46 2.61 16 15 N -0.94 -55.86 13.96 21.45 0.30 -55.56 16 16 Si 0.92 45.15 24.69 68.60 1.69 46.84 16 17 H -0.29 -15.23 6.96 99.48 0.69 -14.54 16 18 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 19 H -0.23 -10.38 6.12 99.48 0.61 -9.77 16 20 C -0.15 -5.36 9.96 30.62 0.30 -5.06 16 21 C -0.19 -7.07 8.70 30.62 0.27 -6.80 16 22 C -0.06 -1.28 4.41 -19.87 -0.09 -1.37 16 23 C -0.14 -3.25 8.98 22.27 0.20 -3.05 16 24 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 25 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 26 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 27 C -0.12 -1.92 8.71 22.27 0.19 -1.73 16 28 H 0.07 0.95 6.86 -2.39 -0.02 0.93 16 29 H 0.08 0.88 7.39 -2.39 -0.02 0.86 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.95 7.39 -2.39 -0.02 0.94 16 32 H 0.05 0.92 6.86 -2.39 -0.02 0.90 16 33 H 0.39 5.86 9.12 -74.06 -0.68 5.19 16 34 H 0.05 1.59 7.04 -2.38 -0.02 1.57 16 35 H 0.06 1.63 7.53 -2.39 -0.02 1.62 16 36 H 0.41 9.47 6.19 -92.70 -0.57 8.89 16 37 H 0.41 14.42 8.36 -92.71 -0.78 13.65 16 38 H 0.02 1.19 4.25 -2.39 -0.01 1.18 16 39 H 0.06 2.37 8.06 -2.39 -0.02 2.35 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.10 3.02 8.14 -2.39 -0.02 3.01 16 43 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 44 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.11 2.84 5.90 -2.91 -0.02 2.82 16 46 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 47 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 48 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 49 H 0.14 1.59 7.10 -2.91 -0.02 1.57 16 Total: -1.00 -73.65 388.74 -0.70 -74.35 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: -1.15 Total: 39.89 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 5.40 Total: -6.06 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -4.70 Total: -109.46 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -1.94 Total: -45.56 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.69 Total: 46.84 kcal Total: -73.65 -0.70 -74.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355832747.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.585 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds