Wall clock time and date at job start Tue Mar 31 2020 17:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47085 * 2 1 4 4 O 1.42901 * 109.46769 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47494 * 239.99389 * 2 1 3 6 6 N 1.46499 * 109.47058 * 60.00131 * 5 2 1 7 7 C 1.34783 * 120.00220 * 179.97438 * 6 5 2 8 8 O 1.21582 * 119.99598 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99955 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99967 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47311 * 178.28962 * 10 9 7 12 12 C 1.50702 * 115.54745 * 65.14283 * 11 10 9 13 13 H 1.07995 * 119.99800 * 265.40062 * 12 11 10 14 14 C 1.37879 * 119.99778 * 85.40476 * 12 11 10 15 15 N 1.31510 * 120.00271 * 353.55801 * 14 12 11 16 16 Si 1.86802 * 119.99660 * 173.54966 * 14 12 11 17 17 H 1.48504 * 109.46548 * 90.00327 * 16 14 12 18 18 H 1.48500 * 109.47034 * 209.99958 * 16 14 12 19 19 H 1.48497 * 109.47456 * 330.00396 * 16 14 12 20 20 C 1.52998 * 117.49672 * 279.47263 * 11 10 9 21 21 C 1.52999 * 117.49630 * 210.81080 * 11 10 9 22 22 C 1.50707 * 109.46597 * 119.99542 * 2 1 3 23 23 C 1.38232 * 119.99940 * 300.00007 * 22 2 1 24 24 C 1.38238 * 119.99881 * 180.02562 * 23 22 2 25 25 C 1.38238 * 119.99649 * 359.95755 * 24 23 22 26 26 C 1.38230 * 120.00430 * 0.27644 * 25 24 23 27 27 C 1.38234 * 119.99836 * 120.02379 * 22 2 1 28 28 H 1.08993 * 109.47125 * 300.00776 * 1 2 3 29 29 H 1.09004 * 109.46243 * 60.00614 * 1 2 3 30 30 H 1.08992 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46757 * 299.99312 * 3 2 1 32 32 H 1.08993 * 109.47773 * 59.99620 * 3 2 1 33 33 H 0.96704 * 113.99646 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47578 * 180.02562 * 5 2 1 35 35 H 1.09005 * 109.47518 * 300.00696 * 5 2 1 36 36 H 0.96998 * 120.00119 * 0.02562 * 6 5 2 37 37 H 0.96998 * 120.00385 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.47421 * 298.28787 * 10 9 7 39 39 H 1.08999 * 109.47424 * 58.29025 * 10 9 7 40 40 H 0.97001 * 120.00070 * 185.07042 * 15 14 12 41 41 H 1.08994 * 117.50098 * 0.02562 * 20 11 10 42 42 H 1.08995 * 117.49468 * 145.02384 * 20 11 10 43 43 H 1.09004 * 117.49924 * 214.97756 * 21 11 10 44 44 H 1.08997 * 117.50446 * 359.97438 * 21 11 10 45 45 H 1.08003 * 120.00620 * 0.02562 * 23 22 2 46 46 H 1.08004 * 119.99859 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.99460 * 180.02562 * 25 24 23 48 48 H 1.07993 * 119.99977 * 179.72921 * 26 25 24 49 49 H 1.07999 * 120.00214 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 2.0401 -0.7213 -1.2491 6 7 1.5519 -0.0308 -2.4453 7 6 1.8779 -0.4911 -3.6695 8 8 2.5770 -1.4796 -3.7808 9 7 1.4292 0.1445 -4.7699 10 6 1.7841 -0.3555 -6.1004 11 6 1.1164 0.5148 -7.1671 12 6 1.5851 1.9460 -7.2251 13 1 1.0441 2.7133 -6.6914 14 6 2.7045 2.2755 -7.9594 15 7 3.4357 1.3281 -8.5047 16 14 3.1823 4.0679 -8.1801 17 1 4.0895 4.4775 -7.0781 18 1 3.8763 4.2385 -9.4819 19 1 1.9611 4.9124 -8.1558 20 6 -0.3550 0.2399 -7.4837 21 6 0.7312 -0.1564 -8.4869 22 6 2.0323 -0.7104 1.2306 23 6 1.6983 -0.2380 2.4860 24 6 2.1594 -0.8893 3.6148 25 6 2.9538 -2.0135 3.4880 26 6 3.2918 -2.4830 2.2326 27 6 2.8274 -1.8340 1.1039 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 3.8624 2.3258 0.0002 34 1 3.1301 -0.7217 -1.2489 35 1 1.6767 -1.7490 -1.2491 36 1 0.9945 0.7580 -2.3565 37 1 0.8718 0.9333 -4.6810 38 1 2.8662 -0.3179 -6.2260 39 1 1.4417 -1.3850 -6.2050 40 1 4.2626 1.5543 -8.9585 41 1 -0.8475 -0.5606 -6.9318 42 1 -0.9839 1.0941 -7.7343 43 1 0.8163 0.4372 -9.3971 44 1 0.9538 -1.2179 -8.5955 45 1 1.0770 0.6399 2.5851 46 1 1.8987 -0.5199 4.5957 47 1 3.3137 -2.5225 4.3700 48 1 3.9160 -3.3587 2.1337 49 1 3.0883 -2.2031 0.1230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355832759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:52 Heat of formation + Delta-G solvation = -34.071713 kcal Electronic energy + Delta-G solvation = -28648.872523 eV Core-core repulsion = 24769.511813 eV Total energy + Delta-G solvation = -3879.360710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.41308 -39.14441 -37.53768 -36.68039 -35.35306 -33.27483 -32.86291 -31.95408 -31.14770 -29.72867 -27.17734 -26.33068 -25.73353 -24.79379 -22.93797 -22.27484 -21.19168 -20.28701 -19.46111 -19.35179 -17.93038 -17.48396 -16.97896 -16.34258 -15.63722 -15.48573 -15.06411 -15.05035 -14.66401 -14.55417 -14.33491 -13.95485 -13.81156 -13.66778 -13.39816 -13.13956 -12.98893 -12.68006 -12.54238 -12.46458 -12.14704 -11.86043 -11.58147 -11.54914 -11.36644 -11.00150 -10.95598 -10.91937 -10.60952 -10.52684 -10.25709 -10.12380 -9.70116 -9.49029 -9.04408 -8.95047 -8.83382 -8.74626 -8.48454 -8.23473 -7.92121 -6.06658 -4.15280 1.22944 1.28469 3.24643 3.25453 3.33317 3.34546 3.64555 3.87773 3.98359 4.31231 4.35374 4.58988 4.74344 4.84681 4.86156 4.88213 4.98175 5.09673 5.21469 5.22137 5.27428 5.31291 5.38060 5.41935 5.55508 5.61898 5.79800 5.88442 5.90047 5.90976 6.04314 6.08315 6.32572 6.36416 6.38917 6.48760 6.49591 6.62821 6.71136 6.82865 6.87031 6.88836 7.10697 7.37293 7.43492 7.49692 7.50533 7.63626 7.82043 8.35449 8.71133 8.85260 9.27018 9.51208 11.01183 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.002580 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.445752 B =10851.832225 C =11413.495745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.033 4.033 3 C 0.089 3.911 4 O -0.561 6.561 5 C 0.155 3.845 6 N -0.752 5.752 7 C 0.699 3.301 8 O -0.603 6.603 9 N -0.721 5.721 10 C 0.183 3.817 11 C 0.029 3.971 12 C -0.500 4.500 13 H 0.059 0.941 14 C 0.074 3.926 15 N -0.873 5.873 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.211 4.211 21 C -0.148 4.148 22 C -0.053 4.053 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.116 4.116 27 C -0.113 4.113 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.379 0.621 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.389 0.611 37 H 0.394 0.606 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.262 0.738 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 -1.114 22.495 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C 0.011 3.989 4 O -0.366 6.366 5 C 0.030 3.970 6 N -0.409 5.409 7 C 0.399 3.601 8 O -0.482 6.482 9 N -0.373 5.373 10 C 0.059 3.941 11 C 0.028 3.972 12 C -0.538 4.538 13 H 0.077 0.923 14 C -0.130 4.130 15 N -0.509 5.509 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.248 4.248 21 C -0.186 4.186 22 C -0.053 4.053 23 C -0.133 4.133 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.134 4.134 27 C -0.130 4.130 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.225 0.775 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.223 0.777 37 H 0.227 0.773 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.544 -2.725 22.162 22.786 hybrid contribution -0.012 2.354 -0.083 2.356 sum -4.556 -0.371 22.079 22.547 Atomic orbital electron populations 1.21859 0.92265 1.03287 1.02284 1.19791 0.95961 0.94418 0.93199 1.22168 0.82025 0.94951 0.99730 1.86533 1.18905 1.33546 1.97603 1.21124 0.99733 0.94846 0.81250 1.45101 1.57765 1.33475 1.04577 1.16003 0.80544 0.83248 0.80350 1.90868 1.43111 1.28205 1.86030 1.45120 1.55044 1.32007 1.05160 1.20834 1.00469 0.94106 0.78703 1.19040 0.90242 0.95275 0.92670 1.20317 1.12093 0.90563 1.30794 0.92308 1.24985 0.96377 0.96991 0.94685 1.69973 1.13215 1.31937 1.35807 0.86642 0.78594 0.85430 0.77628 1.20701 1.21164 1.19883 1.23014 0.93688 1.01748 1.06347 1.22491 1.02529 0.98395 0.95191 1.19449 0.97262 0.95240 0.93368 1.20870 1.00593 0.99944 0.91917 1.21058 0.98479 0.96143 0.98230 1.21119 0.99002 0.97046 0.97384 1.21157 0.99789 0.99974 0.92523 1.21251 0.97092 0.95371 0.99326 0.91968 0.91682 0.91299 0.93117 0.93511 0.77455 0.90620 0.91800 0.77665 0.77257 0.91260 0.94772 0.92841 0.91655 0.90448 0.89841 0.91641 0.86464 0.86360 0.86404 0.86102 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.11 37.16 0.30 -0.85 16 2 C -0.03 -0.33 0.45 -155.66 -0.07 -0.40 16 3 C 0.09 0.83 5.56 37.16 0.21 1.04 16 4 O -0.56 -6.19 12.61 -35.23 -0.44 -6.63 16 5 C 0.16 2.08 3.08 -4.05 -0.01 2.07 16 6 N -0.75 -10.87 4.96 -65.23 -0.32 -11.20 16 7 C 0.70 13.68 8.57 -86.92 -0.74 12.94 16 8 O -0.60 -14.29 16.34 5.29 0.09 -14.21 16 9 N -0.72 -14.26 5.48 -65.22 -0.36 -14.62 16 10 C 0.18 4.23 5.50 -4.04 -0.02 4.21 16 11 C 0.03 0.67 1.38 -155.66 -0.21 0.46 16 12 C -0.50 -12.83 8.63 -34.44 -0.30 -13.13 16 13 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 14 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 15 N -0.87 -24.39 12.91 55.43 0.72 -23.68 16 16 Si 0.89 20.52 29.55 -169.99 -5.02 15.49 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 21 C -0.15 -3.39 9.42 -26.69 -0.25 -3.64 16 22 C -0.05 -0.56 4.41 -104.62 -0.46 -1.02 16 23 C -0.12 -1.07 8.71 -39.58 -0.34 -1.41 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 25 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 26 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 27 C -0.11 -1.28 8.98 -39.58 -0.36 -1.63 16 28 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 29 H 0.06 0.50 6.86 -51.93 -0.36 0.15 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.45 6.86 -51.93 -0.36 0.09 16 32 H 0.05 0.35 7.39 -51.93 -0.38 -0.03 16 33 H 0.38 2.71 9.12 45.56 0.42 3.12 16 34 H 0.08 1.20 7.05 -51.93 -0.37 0.84 16 35 H 0.06 0.90 7.51 -51.93 -0.39 0.51 16 36 H 0.39 4.55 6.18 -40.82 -0.25 4.30 16 37 H 0.39 7.01 8.38 -40.82 -0.34 6.66 16 38 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 44 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.12 0.87 7.10 -52.48 -0.37 0.50 16 46 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 48 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 49 H 0.13 1.53 5.90 -52.49 -0.31 1.22 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -32.60 398.44 -10.03 -42.63 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -6.87 Total: 14.92 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -3.82 Total: -8.71 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.03 Total: -49.49 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.36 Total: -20.84 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.60 -10.03 -42.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355832759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.556 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds