Wall clock time and date at job start Tue Mar 31 2020 17:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47085 * 2 1 4 4 O 1.42901 * 109.46769 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47494 * 239.99389 * 2 1 3 6 6 N 1.46499 * 109.47058 * 60.00131 * 5 2 1 7 7 C 1.34783 * 120.00220 * 179.97438 * 6 5 2 8 8 O 1.21582 * 119.99598 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99955 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99967 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47311 * 178.28962 * 10 9 7 12 12 C 1.50702 * 115.54745 * 65.14283 * 11 10 9 13 13 H 1.07995 * 119.99800 * 265.40062 * 12 11 10 14 14 C 1.37879 * 119.99778 * 85.40476 * 12 11 10 15 15 N 1.31510 * 120.00271 * 353.55801 * 14 12 11 16 16 Si 1.86802 * 119.99660 * 173.54966 * 14 12 11 17 17 H 1.48504 * 109.46548 * 90.00327 * 16 14 12 18 18 H 1.48500 * 109.47034 * 209.99958 * 16 14 12 19 19 H 1.48497 * 109.47456 * 330.00396 * 16 14 12 20 20 C 1.52998 * 117.49672 * 279.47263 * 11 10 9 21 21 C 1.52999 * 117.49630 * 210.81080 * 11 10 9 22 22 C 1.50707 * 109.46597 * 119.99542 * 2 1 3 23 23 C 1.38232 * 119.99940 * 300.00007 * 22 2 1 24 24 C 1.38238 * 119.99881 * 180.02562 * 23 22 2 25 25 C 1.38238 * 119.99649 * 359.95755 * 24 23 22 26 26 C 1.38230 * 120.00430 * 0.27644 * 25 24 23 27 27 C 1.38234 * 119.99836 * 120.02379 * 22 2 1 28 28 H 1.08993 * 109.47125 * 300.00776 * 1 2 3 29 29 H 1.09004 * 109.46243 * 60.00614 * 1 2 3 30 30 H 1.08992 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46757 * 299.99312 * 3 2 1 32 32 H 1.08993 * 109.47773 * 59.99620 * 3 2 1 33 33 H 0.96704 * 113.99646 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47578 * 180.02562 * 5 2 1 35 35 H 1.09005 * 109.47518 * 300.00696 * 5 2 1 36 36 H 0.96998 * 120.00119 * 0.02562 * 6 5 2 37 37 H 0.96998 * 120.00385 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.47421 * 298.28787 * 10 9 7 39 39 H 1.08999 * 109.47424 * 58.29025 * 10 9 7 40 40 H 0.97001 * 120.00070 * 185.07042 * 15 14 12 41 41 H 1.08994 * 117.50098 * 0.02562 * 20 11 10 42 42 H 1.08995 * 117.49468 * 145.02384 * 20 11 10 43 43 H 1.09004 * 117.49924 * 214.97756 * 21 11 10 44 44 H 1.08997 * 117.50446 * 359.97438 * 21 11 10 45 45 H 1.08003 * 120.00620 * 0.02562 * 23 22 2 46 46 H 1.08004 * 119.99859 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.99460 * 180.02562 * 25 24 23 48 48 H 1.07993 * 119.99977 * 179.72921 * 26 25 24 49 49 H 1.07999 * 120.00214 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 2.0401 -0.7213 -1.2491 6 7 1.5519 -0.0308 -2.4453 7 6 1.8779 -0.4911 -3.6695 8 8 2.5770 -1.4796 -3.7808 9 7 1.4292 0.1445 -4.7699 10 6 1.7841 -0.3555 -6.1004 11 6 1.1164 0.5148 -7.1671 12 6 1.5851 1.9460 -7.2251 13 1 1.0441 2.7133 -6.6914 14 6 2.7045 2.2755 -7.9594 15 7 3.4357 1.3281 -8.5047 16 14 3.1823 4.0679 -8.1801 17 1 4.0895 4.4775 -7.0781 18 1 3.8763 4.2385 -9.4819 19 1 1.9611 4.9124 -8.1558 20 6 -0.3550 0.2399 -7.4837 21 6 0.7312 -0.1564 -8.4869 22 6 2.0323 -0.7104 1.2306 23 6 1.6983 -0.2380 2.4860 24 6 2.1594 -0.8893 3.6148 25 6 2.9538 -2.0135 3.4880 26 6 3.2918 -2.4830 2.2326 27 6 2.8274 -1.8340 1.1039 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 3.8624 2.3258 0.0002 34 1 3.1301 -0.7217 -1.2489 35 1 1.6767 -1.7490 -1.2491 36 1 0.9945 0.7580 -2.3565 37 1 0.8718 0.9333 -4.6810 38 1 2.8662 -0.3179 -6.2260 39 1 1.4417 -1.3850 -6.2050 40 1 4.2626 1.5543 -8.9585 41 1 -0.8475 -0.5606 -6.9318 42 1 -0.9839 1.0941 -7.7343 43 1 0.8163 0.4372 -9.3971 44 1 0.9538 -1.2179 -8.5955 45 1 1.0770 0.6399 2.5851 46 1 1.8987 -0.5199 4.5957 47 1 3.3137 -2.5225 4.3700 48 1 3.9160 -3.3587 2.1337 49 1 3.0883 -2.2031 0.1230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355832759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:51 Heat of formation + Delta-G solvation = -56.320123 kcal Electronic energy + Delta-G solvation = -28649.837286 eV Core-core repulsion = 24769.511813 eV Total energy + Delta-G solvation = -3880.325474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.41976 -40.48348 -38.66029 -38.18289 -36.33067 -34.96517 -34.12796 -33.90128 -31.87979 -30.48856 -28.54841 -27.55513 -27.04122 -26.35945 -23.74896 -23.09905 -22.92080 -21.80124 -21.22441 -20.31794 -19.37333 -18.26464 -18.08209 -17.84264 -17.01177 -16.75154 -16.54150 -16.13626 -16.08615 -15.69558 -15.39184 -15.26806 -15.05590 -14.93970 -14.42158 -14.36051 -14.07034 -13.97565 -13.70766 -13.48439 -13.32384 -13.15159 -12.90737 -12.84140 -12.81576 -12.45761 -12.33236 -12.20675 -12.02597 -11.71038 -11.51909 -11.38802 -11.28423 -10.86300 -10.83705 -10.45187 -10.28259 -10.03097 -9.76799 -9.56626 -9.55513 -8.08224 -6.21495 0.50876 0.55131 1.42644 1.45210 1.53669 1.81523 2.26515 2.43424 2.92147 3.19836 3.23525 3.37014 3.51804 3.65724 3.83140 3.93556 4.13716 4.18547 4.26707 4.31311 4.33932 4.55330 4.57684 4.58210 4.63699 4.67365 4.69022 4.73300 4.75625 4.87579 4.90969 5.00263 5.01613 5.05637 5.16838 5.19866 5.28725 5.29040 5.49238 5.60348 5.62742 5.64773 5.68113 5.72655 5.73770 5.80108 6.13734 6.17556 6.38271 6.85664 6.91889 7.24841 7.47878 7.69886 8.99406 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.002580 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.445752 B =10851.832225 C =11413.495745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 C 0.086 3.914 4 O -0.588 6.588 5 C 0.160 3.840 6 N -0.727 5.727 7 C 0.695 3.305 8 O -0.648 6.648 9 N -0.713 5.713 10 C 0.200 3.800 11 C 0.006 3.994 12 C -0.503 4.503 13 H 0.066 0.934 14 C 0.023 3.977 15 N -0.909 5.909 16 Si 0.951 3.049 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.261 1.261 20 C -0.174 4.174 21 C -0.161 4.161 22 C -0.063 4.063 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.141 4.141 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.393 0.607 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.407 0.593 37 H 0.407 0.593 38 H 0.023 0.977 39 H 0.031 0.969 40 H 0.258 0.742 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.142 0.858 46 H 0.146 0.854 47 H 0.140 0.860 48 H 0.128 0.872 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 0.891 24.978 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 C 0.008 3.992 4 O -0.395 6.395 5 C 0.036 3.964 6 N -0.385 5.385 7 C 0.395 3.605 8 O -0.531 6.531 9 N -0.367 5.367 10 C 0.075 3.925 11 C 0.005 3.995 12 C -0.541 4.541 13 H 0.084 0.916 14 C -0.178 4.178 15 N -0.547 5.547 16 Si 0.777 3.223 17 H -0.206 1.206 18 H -0.217 1.217 19 H -0.186 1.186 20 C -0.211 4.211 21 C -0.199 4.199 22 C -0.064 4.064 23 C -0.135 4.135 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.148 4.148 27 C -0.159 4.159 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.242 0.758 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.244 0.756 37 H 0.242 0.758 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.159 0.841 46 H 0.164 0.836 47 H 0.158 0.842 48 H 0.146 0.854 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.770 -0.661 24.688 25.608 hybrid contribution 0.683 1.681 -0.787 1.977 sum -6.087 1.019 23.901 24.685 Atomic orbital electron populations 1.21874 0.90418 1.03328 1.03859 1.19766 0.97276 0.94579 0.90948 1.22304 0.81315 0.94281 1.01272 1.86508 1.20101 1.35204 1.97729 1.21096 0.98022 0.94945 0.82334 1.44870 1.56850 1.33564 1.03168 1.16192 0.80098 0.82733 0.81464 1.90839 1.45102 1.30324 1.86836 1.44862 1.55226 1.32410 1.04165 1.20389 0.97576 0.94176 0.80391 1.19046 0.92753 0.94597 0.93055 1.20662 1.11739 0.91700 1.29952 0.91600 1.25736 0.96707 1.00561 0.94800 1.70112 1.13639 1.33820 1.37111 0.85671 0.78477 0.81141 0.77029 1.20635 1.21726 1.18552 1.22999 0.92047 1.02250 1.03776 1.22439 1.04596 0.98300 0.94552 1.19551 0.97454 0.95097 0.94259 1.21136 1.00584 1.00587 0.91203 1.21446 0.97524 0.95601 0.99390 1.21432 0.98789 0.97347 0.97488 1.21347 1.00135 1.00416 0.92868 1.21271 0.98828 0.96796 0.98985 0.89513 0.90962 0.92077 0.92583 0.90777 0.75771 0.93602 0.92965 0.75550 0.75786 0.95854 0.95080 0.93297 0.89361 0.89373 0.91716 0.91268 0.84059 0.83644 0.84235 0.85409 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.11 71.98 0.58 -1.33 16 2 C -0.03 -0.47 0.45 -52.93 -0.02 -0.50 16 3 C 0.09 1.40 5.56 71.98 0.40 1.80 16 4 O -0.59 -12.42 12.61 -148.98 -1.88 -14.30 16 5 C 0.16 4.41 3.08 86.38 0.27 4.67 16 6 N -0.73 -20.75 4.96 -478.55 -2.37 -23.13 16 7 C 0.70 27.59 8.57 179.05 1.53 29.12 16 8 O -0.65 -32.00 16.34 -3.97 -0.06 -32.07 16 9 N -0.71 -28.09 5.48 -478.54 -2.62 -30.72 16 10 C 0.20 9.44 5.50 86.38 0.48 9.91 16 11 C 0.01 0.29 1.38 -52.93 -0.07 0.22 16 12 C -0.50 -25.50 8.63 25.60 0.22 -25.28 16 13 H 0.07 3.18 7.82 -2.91 -0.02 3.16 16 14 C 0.02 1.20 5.39 84.66 0.46 1.65 16 15 N -0.91 -52.03 12.91 21.45 0.28 -51.75 16 16 Si 0.95 42.07 29.55 68.60 2.03 44.10 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 20 C -0.17 -6.84 9.96 30.62 0.30 -6.53 16 21 C -0.16 -7.35 9.42 30.62 0.29 -7.06 16 22 C -0.06 -1.28 4.41 -19.86 -0.09 -1.36 16 23 C -0.12 -1.85 8.71 22.27 0.19 -1.66 16 24 C -0.12 -1.79 10.05 22.27 0.22 -1.56 16 25 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 26 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 27 C -0.14 -3.32 8.98 22.27 0.20 -3.12 16 28 H 0.09 0.81 7.39 -2.39 -0.02 0.79 16 29 H 0.07 0.89 6.86 -2.39 -0.02 0.88 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.84 6.86 -2.38 -0.02 0.82 16 32 H 0.07 0.83 7.39 -2.39 -0.02 0.81 16 33 H 0.39 5.15 9.12 -74.05 -0.68 4.48 16 34 H 0.05 1.55 7.05 -2.39 -0.02 1.53 16 35 H 0.05 1.55 7.51 -2.38 -0.02 1.54 16 36 H 0.41 8.77 6.18 -92.71 -0.57 8.20 16 37 H 0.41 13.86 8.38 -92.71 -0.78 13.08 16 38 H 0.02 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.03 1.46 8.09 -2.39 -0.02 1.45 16 40 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 41 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.06 3.18 8.14 -2.38 -0.02 3.16 16 44 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.14 1.49 7.10 -2.91 -0.02 1.47 16 46 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 47 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 48 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 49 H 0.11 2.87 5.90 -2.91 -0.02 2.86 16 Total: -1.00 -72.67 398.44 -0.27 -72.94 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: -1.04 Total: 40.28 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 5.41 Total: -5.35 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -4.72 Total: -105.60 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -1.94 Total: -46.37 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -72.67 -0.27 -72.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355832759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.620 kcal (2) G-P(sol) polarization free energy of solvation -72.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds