Wall clock time and date at job start Tue Mar 31 2020 17:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47355 * 2 1 4 4 C 1.52998 * 109.46802 * 119.99413 * 2 1 3 5 5 N 1.46495 * 109.47536 * 305.00383 * 4 2 1 6 6 C 1.34775 * 120.00503 * 179.97438 * 5 4 2 7 7 O 1.21594 * 119.99912 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00604 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00582 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46757 * 34.99754 * 9 8 6 11 11 C 1.52993 * 109.47535 * 155.00401 * 9 8 6 12 12 C 1.50703 * 109.46988 * 295.00287 * 11 9 8 13 13 H 1.08004 * 120.00074 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99970 * 180.02562 * 12 11 9 15 15 N 1.31507 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99829 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47137 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46750 * 119.99849 * 16 14 12 19 19 H 1.48491 * 109.47203 * 239.99629 * 16 14 12 20 20 C 1.50700 * 109.46772 * 275.00414 * 9 8 6 21 21 C 1.38239 * 120.00402 * 319.72085 * 20 9 8 22 22 C 1.38229 * 120.00251 * 179.79083 * 21 20 9 23 23 C 1.38241 * 119.99994 * 0.43955 * 22 21 20 24 24 C 1.38237 * 120.00043 * 359.81806 * 23 22 21 25 25 C 1.38234 * 120.00082 * 139.99847 * 20 9 8 26 26 C 1.52998 * 109.47613 * 239.99438 * 2 1 3 27 27 C 1.53000 * 117.49463 * 351.38234 * 26 2 1 28 28 C 1.52997 * 60.00347 * 107.48750 * 27 26 2 29 29 H 1.08997 * 109.47353 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47578 * 300.00309 * 1 2 3 31 31 H 1.09000 * 109.47081 * 60.00372 * 1 2 3 32 32 H 0.96692 * 114.00369 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47299 * 65.00486 * 4 2 1 34 34 H 1.09004 * 109.47402 * 184.99837 * 4 2 1 35 35 H 0.97005 * 120.00062 * 359.97438 * 5 4 2 36 36 H 0.97003 * 119.99894 * 0.02562 * 8 6 5 37 37 H 1.09006 * 109.47171 * 54.99747 * 11 9 8 38 38 H 1.08992 * 109.47214 * 175.00072 * 11 9 8 39 39 H 0.97001 * 119.99853 * 180.02562 * 15 14 12 40 40 H 1.08004 * 119.99315 * 0.02562 * 21 20 9 41 41 H 1.08000 * 120.00452 * 180.27908 * 22 21 20 42 42 H 1.07994 * 120.00283 * 179.83277 * 23 22 21 43 43 H 1.07997 * 120.00214 * 179.97438 * 24 23 22 44 44 H 1.08007 * 119.99749 * 359.97438 * 25 20 9 45 45 H 1.08990 * 115.56470 * 205.69284 * 26 2 1 46 46 H 1.09002 * 117.49696 * 214.97963 * 27 26 2 47 47 H 1.09002 * 117.50343 * 359.97438 * 27 26 2 48 48 H 1.08999 * 117.49685 * 252.51237 * 28 27 26 49 49 H 1.08997 * 117.50044 * 107.48590 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.4557 -0.1035 2.4424 6 6 1.7637 -0.5772 3.6660 7 8 2.5269 -1.5170 3.7797 8 7 1.2267 -0.0087 4.7636 9 6 1.5619 -0.5233 6.0937 10 1 2.5990 -0.8586 6.1027 11 6 1.3752 0.5853 7.1314 12 6 2.3661 1.6902 6.8699 13 1 3.0600 1.6095 6.0462 14 6 2.3877 2.8036 7.6829 15 7 1.5432 2.9016 8.6862 16 14 3.6165 4.1728 7.3592 17 1 4.4481 3.8230 6.1797 18 1 2.8877 5.4390 7.0924 19 1 4.4898 4.3454 8.5477 20 6 0.6568 -1.6811 6.4271 21 6 -0.6828 -1.6308 6.0895 22 6 -1.5121 -2.6947 6.3915 23 6 -1.0038 -3.8051 7.0393 24 6 0.3346 -3.8532 7.3816 25 6 1.1648 -2.7911 7.0757 26 6 2.0401 -0.7213 -1.2491 27 6 1.0105 -1.4542 -2.1115 28 6 1.6358 -0.1497 -2.6096 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.9703 1.4236 0.0004 33 1 1.7516 -1.7714 1.2057 34 1 3.1262 -0.6443 1.2953 35 1 0.8471 0.6464 2.3517 36 1 0.6181 0.7412 4.6730 37 1 0.3622 0.9817 7.0614 38 1 1.5384 0.1796 8.1298 39 1 1.5581 3.6851 9.2579 40 1 -1.0806 -0.7618 5.5864 41 1 -2.5577 -2.6573 6.1238 42 1 -1.6523 -4.6352 7.2776 43 1 0.7316 -4.7206 7.8881 44 1 2.2106 -2.8287 7.3431 45 1 3.0322 -1.1645 -1.1641 46 1 1.3254 -2.3796 -2.5939 47 1 -0.0302 -1.4228 -1.7888 48 1 1.0065 0.7403 -2.6146 49 1 2.3621 -0.2168 -3.4196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440255896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:51 Heat of formation + Delta-G solvation = -37.076912 kcal Electronic energy + Delta-G solvation = -28760.910891 eV Core-core repulsion = 24881.419865 eV Total energy + Delta-G solvation = -3879.491026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.09557 -39.33019 -38.40270 -35.92672 -35.20099 -34.01657 -32.69152 -31.29242 -30.47113 -30.13817 -28.72043 -26.97524 -24.86397 -23.33638 -22.61986 -22.24115 -21.90114 -20.63018 -20.01425 -19.70558 -18.11897 -17.15527 -16.82695 -16.16488 -16.06970 -15.54103 -15.39387 -14.88700 -14.63837 -14.52190 -14.34674 -14.09137 -13.73237 -13.36368 -13.13788 -13.03149 -12.86028 -12.64451 -12.49422 -12.41227 -12.08261 -12.01342 -11.54408 -11.49386 -11.10032 -11.06941 -10.89907 -10.80723 -10.70986 -10.56016 -10.50536 -10.41870 -10.13199 -9.74147 -9.63435 -9.24550 -8.86078 -8.49584 -8.43385 -8.24034 -8.12570 -6.06625 -4.09466 1.82737 1.85048 3.10725 3.28022 3.36459 3.41281 3.42200 3.75894 4.12106 4.22557 4.28656 4.42348 4.46312 4.60712 4.72130 4.83220 4.89032 5.09019 5.30180 5.30471 5.31872 5.32996 5.41879 5.48433 5.51750 5.58569 5.60644 5.71303 5.75505 5.81049 5.84451 5.95733 5.98805 6.00751 6.20414 6.40676 6.47436 6.62998 6.75532 6.88887 6.89881 7.01689 7.16050 7.37679 7.45463 7.46502 7.55351 7.72172 7.90867 8.29251 8.57982 8.96853 9.15844 9.55442 11.03989 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.003852 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.736011 B = 7267.895146 C =10044.429265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 O -0.551 6.551 4 C 0.123 3.877 5 N -0.747 5.747 6 C 0.703 3.297 7 O -0.601 6.601 8 N -0.716 5.716 9 C 0.202 3.798 10 H 0.086 0.914 11 C 0.023 3.977 12 C -0.517 4.517 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.070 4.070 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.108 4.108 26 C -0.186 4.186 27 C -0.177 4.177 28 C -0.164 4.164 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.379 0.621 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.396 0.604 37 H 0.024 0.976 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.098 0.902 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 -8.711 -17.341 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.111 3.889 3 O -0.358 6.358 4 C -0.003 4.003 5 N -0.404 5.404 6 C 0.403 3.597 7 O -0.480 6.480 8 N -0.368 5.368 9 C 0.097 3.903 10 H 0.104 0.896 11 C -0.014 4.014 12 C -0.555 4.555 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.071 4.071 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.205 4.205 27 C -0.214 4.214 28 C -0.201 4.201 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.227 0.773 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.230 0.770 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.121 0.879 48 H 0.117 0.883 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.541 -9.326 -17.067 19.972 hybrid contribution 0.761 1.339 -0.123 1.545 sum -3.781 -7.987 -17.189 19.328 Atomic orbital electron populations 1.21865 0.92417 1.02651 1.02997 1.20849 0.94953 0.82060 0.91068 1.86555 1.27117 1.25234 1.96852 1.21677 0.98103 0.97260 0.83255 1.44997 1.52746 1.38376 1.04311 1.15996 0.80868 0.82407 0.80426 1.90869 1.40334 1.30867 1.85910 1.45115 1.50503 1.36468 1.04717 1.20102 0.96630 0.92009 0.81519 0.89630 1.19401 0.97903 0.91237 0.92859 1.21182 1.17941 1.02620 1.13776 0.92321 1.24988 0.95783 0.98384 0.95050 1.69969 1.36610 1.29241 1.17346 0.86544 0.81337 0.81956 0.78229 1.19761 1.21070 1.21020 1.20614 0.94759 0.95698 0.96034 1.20889 0.93307 0.98168 1.00105 1.21029 0.99193 0.94278 0.99918 1.20979 0.95529 0.98288 1.00630 1.21034 0.93935 0.98481 1.00702 1.21022 0.99831 0.93094 0.98713 1.22911 1.00454 1.04860 0.92282 1.23133 0.98767 0.96221 1.03242 1.22860 1.03623 0.97601 0.95972 0.90568 0.91532 0.91623 0.77290 0.91064 0.91723 0.76815 0.76990 0.95773 0.94719 0.92973 0.86668 0.86848 0.86926 0.86669 0.86208 0.87372 0.88759 0.87888 0.88334 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.21 37.16 0.27 -0.99 16 2 C 0.15 1.42 0.88 -90.62 -0.08 1.34 16 3 O -0.55 -5.62 12.83 -35.23 -0.45 -6.08 16 4 C 0.12 1.48 4.80 -4.05 -0.02 1.46 16 5 N -0.75 -10.51 5.19 -65.23 -0.34 -10.85 16 6 C 0.70 12.98 8.52 -86.92 -0.74 12.24 16 7 O -0.60 -13.27 16.01 5.28 0.08 -13.18 16 8 N -0.72 -13.27 4.05 -59.82 -0.24 -13.51 16 9 C 0.20 4.22 2.11 -69.09 -0.15 4.07 16 10 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 11 C 0.02 0.57 4.49 -27.89 -0.13 0.44 16 12 C -0.52 -13.83 8.84 -34.44 -0.30 -14.13 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.07 -1.33 4.91 -104.62 -0.51 -1.84 16 21 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 22 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 23 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 24 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 25 C -0.11 -1.93 9.67 -39.58 -0.38 -2.32 16 26 C -0.19 -1.49 5.36 -90.62 -0.49 -1.98 16 27 C -0.18 -1.25 9.57 -26.73 -0.26 -1.51 16 28 C -0.16 -1.19 9.80 -26.73 -0.26 -1.45 16 29 H 0.08 0.61 6.98 -51.93 -0.36 0.25 16 30 H 0.07 0.62 6.57 -51.93 -0.34 0.28 16 31 H 0.06 0.54 7.07 -51.93 -0.37 0.17 16 32 H 0.38 2.98 9.04 45.56 0.41 3.39 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.40 4.95 7.00 -40.82 -0.29 4.66 16 36 H 0.40 6.76 8.62 -40.82 -0.35 6.41 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.12 1.86 7.73 -52.48 -0.41 1.45 16 41 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.12 2.06 8.04 -52.48 -0.42 1.64 16 45 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.70 5.85 -51.93 -0.30 0.39 16 48 H 0.10 0.76 7.61 -51.93 -0.40 0.37 16 49 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -32.69 402.45 -10.85 -43.55 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -6.98 Total: 15.11 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -4.71 Total: -12.32 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.16 Total: -49.38 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.37 Total: -19.26 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.69 -10.85 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440255896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.469 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds