Wall clock time and date at job start Tue Mar 31 2020 17:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47355 * 2 1 4 4 C 1.52998 * 109.46802 * 119.99413 * 2 1 3 5 5 N 1.46495 * 109.47536 * 305.00383 * 4 2 1 6 6 C 1.34775 * 120.00503 * 179.97438 * 5 4 2 7 7 O 1.21594 * 119.99912 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00604 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00582 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46757 * 34.99754 * 9 8 6 11 11 C 1.52993 * 109.47535 * 155.00401 * 9 8 6 12 12 C 1.50703 * 109.46988 * 295.00287 * 11 9 8 13 13 H 1.08004 * 120.00074 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99970 * 180.02562 * 12 11 9 15 15 N 1.31507 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99829 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47137 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46750 * 119.99849 * 16 14 12 19 19 H 1.48491 * 109.47203 * 239.99629 * 16 14 12 20 20 C 1.50700 * 109.46772 * 275.00414 * 9 8 6 21 21 C 1.38239 * 120.00402 * 319.72085 * 20 9 8 22 22 C 1.38229 * 120.00251 * 179.79083 * 21 20 9 23 23 C 1.38241 * 119.99994 * 0.43955 * 22 21 20 24 24 C 1.38237 * 120.00043 * 359.81806 * 23 22 21 25 25 C 1.38234 * 120.00082 * 139.99847 * 20 9 8 26 26 C 1.52998 * 109.47613 * 239.99438 * 2 1 3 27 27 C 1.53000 * 117.49463 * 351.38234 * 26 2 1 28 28 C 1.52997 * 60.00347 * 107.48750 * 27 26 2 29 29 H 1.08997 * 109.47353 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47578 * 300.00309 * 1 2 3 31 31 H 1.09000 * 109.47081 * 60.00372 * 1 2 3 32 32 H 0.96692 * 114.00369 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47299 * 65.00486 * 4 2 1 34 34 H 1.09004 * 109.47402 * 184.99837 * 4 2 1 35 35 H 0.97005 * 120.00062 * 359.97438 * 5 4 2 36 36 H 0.97003 * 119.99894 * 0.02562 * 8 6 5 37 37 H 1.09006 * 109.47171 * 54.99747 * 11 9 8 38 38 H 1.08992 * 109.47214 * 175.00072 * 11 9 8 39 39 H 0.97001 * 119.99853 * 180.02562 * 15 14 12 40 40 H 1.08004 * 119.99315 * 0.02562 * 21 20 9 41 41 H 1.08000 * 120.00452 * 180.27908 * 22 21 20 42 42 H 1.07994 * 120.00283 * 179.83277 * 23 22 21 43 43 H 1.07997 * 120.00214 * 179.97438 * 24 23 22 44 44 H 1.08007 * 119.99749 * 359.97438 * 25 20 9 45 45 H 1.08990 * 115.56470 * 205.69284 * 26 2 1 46 46 H 1.09002 * 117.49696 * 214.97963 * 27 26 2 47 47 H 1.09002 * 117.50343 * 359.97438 * 27 26 2 48 48 H 1.08999 * 117.49685 * 252.51237 * 28 27 26 49 49 H 1.08997 * 117.50044 * 107.48590 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.4557 -0.1035 2.4424 6 6 1.7637 -0.5772 3.6660 7 8 2.5269 -1.5170 3.7797 8 7 1.2267 -0.0087 4.7636 9 6 1.5619 -0.5233 6.0937 10 1 2.5990 -0.8586 6.1027 11 6 1.3752 0.5853 7.1314 12 6 2.3661 1.6902 6.8699 13 1 3.0600 1.6095 6.0462 14 6 2.3877 2.8036 7.6829 15 7 1.5432 2.9016 8.6862 16 14 3.6165 4.1728 7.3592 17 1 4.4481 3.8230 6.1797 18 1 2.8877 5.4390 7.0924 19 1 4.4898 4.3454 8.5477 20 6 0.6568 -1.6811 6.4271 21 6 -0.6828 -1.6308 6.0895 22 6 -1.5121 -2.6947 6.3915 23 6 -1.0038 -3.8051 7.0393 24 6 0.3346 -3.8532 7.3816 25 6 1.1648 -2.7911 7.0757 26 6 2.0401 -0.7213 -1.2491 27 6 1.0105 -1.4542 -2.1115 28 6 1.6358 -0.1497 -2.6096 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.9703 1.4236 0.0004 33 1 1.7516 -1.7714 1.2057 34 1 3.1262 -0.6443 1.2953 35 1 0.8471 0.6464 2.3517 36 1 0.6181 0.7412 4.6730 37 1 0.3622 0.9817 7.0614 38 1 1.5384 0.1796 8.1298 39 1 1.5581 3.6851 9.2579 40 1 -1.0806 -0.7618 5.5864 41 1 -2.5577 -2.6573 6.1238 42 1 -1.6523 -4.6352 7.2776 43 1 0.7316 -4.7206 7.8881 44 1 2.2106 -2.8287 7.3431 45 1 3.0322 -1.1645 -1.1641 46 1 1.3254 -2.3796 -2.5939 47 1 -0.0302 -1.4228 -1.7888 48 1 1.0065 0.7403 -2.6146 49 1 2.3621 -0.2168 -3.4196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440255896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:50 Heat of formation + Delta-G solvation = -58.427542 kcal Electronic energy + Delta-G solvation = -28761.836723 eV Core-core repulsion = 24881.419865 eV Total energy + Delta-G solvation = -3880.416858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.35147 -40.37629 -39.64460 -36.96549 -36.49806 -35.26620 -34.70500 -32.62429 -31.70159 -31.15759 -30.46890 -27.96691 -26.59051 -24.27203 -23.77078 -23.33923 -23.17532 -22.00117 -21.29002 -20.71097 -19.46437 -18.65178 -17.97456 -17.63342 -17.20928 -16.68684 -16.57343 -16.49893 -16.06801 -15.79748 -15.51384 -15.05279 -14.97398 -14.79841 -14.48213 -14.17239 -14.13893 -13.89317 -13.65397 -13.50956 -13.41195 -13.29914 -12.92238 -12.84065 -12.62210 -12.47103 -12.12919 -12.10583 -11.86221 -11.80189 -11.58188 -11.43986 -11.32128 -11.29635 -11.11264 -10.83352 -10.58869 -10.28275 -9.75687 -9.68164 -9.49095 -8.20116 -6.29820 0.53046 0.57870 1.37934 1.40372 1.52073 1.81114 2.26469 2.40045 2.78169 2.97270 3.13255 3.35582 3.47344 3.54620 3.78372 3.90779 4.02238 4.05504 4.11907 4.19597 4.22605 4.33616 4.36393 4.45471 4.63071 4.67293 4.75756 4.77293 4.79951 4.80776 4.87012 4.95292 5.06222 5.14543 5.16209 5.21750 5.29685 5.30296 5.32297 5.43994 5.53661 5.62876 5.64402 5.66146 5.78882 5.89654 6.12527 6.17835 6.22581 6.77237 6.82771 7.17963 7.39123 7.68622 8.90791 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.003852 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.736011 B = 7267.895146 C =10044.429265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.162 3.838 3 O -0.563 6.563 4 C 0.122 3.878 5 N -0.729 5.729 6 C 0.701 3.299 7 O -0.639 6.639 8 N -0.712 5.712 9 C 0.219 3.781 10 H 0.055 0.945 11 C 0.039 3.961 12 C -0.527 4.527 13 H 0.051 0.949 14 C 0.011 3.989 15 N -0.925 5.925 16 Si 0.957 3.043 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.281 1.281 20 C -0.097 4.097 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.195 4.195 27 C -0.173 4.173 28 C -0.158 4.158 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.388 0.612 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.407 0.593 36 H 0.403 0.597 37 H 0.012 0.988 38 H 0.005 0.995 39 H 0.264 0.736 40 H 0.119 0.881 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 -9.290 -18.873 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.121 3.879 3 O -0.371 6.371 4 C -0.003 4.003 5 N -0.386 5.386 6 C 0.401 3.599 7 O -0.521 6.521 8 N -0.365 5.365 9 C 0.113 3.887 10 H 0.073 0.927 11 C 0.001 3.999 12 C -0.565 4.565 13 H 0.069 0.931 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.782 3.218 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.207 1.207 20 C -0.098 4.098 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.152 4.152 26 C -0.214 4.214 27 C -0.209 4.209 28 C -0.195 4.195 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.244 0.756 36 H 0.238 0.762 37 H 0.031 0.969 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.121 0.879 47 H 0.125 0.875 48 H 0.113 0.887 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.766 -9.881 -18.638 21.869 hybrid contribution 1.112 1.456 0.353 1.866 sum -4.654 -8.425 -18.284 20.663 Atomic orbital electron populations 1.21907 0.91827 1.03265 1.03084 1.20749 0.95285 0.81618 0.90212 1.86534 1.28126 1.25626 1.96809 1.21846 0.97627 0.97372 0.83471 1.44894 1.52178 1.38126 1.03446 1.16117 0.80449 0.82046 0.81300 1.90837 1.42062 1.32644 1.86577 1.44921 1.50642 1.36735 1.04185 1.19565 0.95733 0.91679 0.81688 0.92709 1.19132 0.96539 0.91686 0.92535 1.21412 1.18140 1.03446 1.13487 0.93060 1.25767 0.97492 1.00730 0.94790 1.70073 1.38139 1.30116 1.18225 0.85523 0.79046 0.79155 0.78032 1.19539 1.20088 1.20682 1.20488 0.95490 0.95608 0.98239 1.21042 0.92795 0.99389 1.00584 1.21430 1.00468 0.93473 0.98900 1.21463 0.95455 0.98981 0.98848 1.21383 0.94326 0.98349 1.00123 1.21179 1.00215 0.94133 0.99716 1.22836 1.00935 1.05691 0.91965 1.23231 0.98712 0.96542 1.02454 1.22889 1.03617 0.97555 0.95466 0.89724 0.92209 0.90756 0.76262 0.91533 0.92595 0.75640 0.76191 0.96936 0.97677 0.92722 0.86297 0.83619 0.83095 0.83863 0.87027 0.87239 0.87858 0.87452 0.88719 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 7.21 71.98 0.52 -1.80 16 2 C 0.16 2.88 0.88 -10.80 -0.01 2.87 16 3 O -0.56 -10.88 12.83 -148.98 -1.91 -12.79 16 4 C 0.12 2.91 4.80 86.38 0.41 3.32 16 5 N -0.73 -20.57 5.19 -478.54 -2.49 -23.05 16 6 C 0.70 26.56 8.52 179.06 1.53 28.09 16 7 O -0.64 -29.23 16.01 -4.01 -0.06 -29.30 16 8 N -0.71 -27.37 4.05 -461.42 -1.87 -29.23 16 9 C 0.22 9.65 2.11 44.24 0.09 9.74 16 10 H 0.05 2.71 7.44 -2.39 -0.02 2.70 16 11 C 0.04 1.97 4.49 29.85 0.13 2.10 16 12 C -0.53 -29.09 8.84 25.60 0.23 -28.87 16 13 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 14 C 0.01 0.60 5.46 84.66 0.46 1.07 16 15 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 16 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 C -0.10 -3.81 4.91 -19.87 -0.10 -3.91 16 21 C -0.12 -4.09 9.32 22.27 0.21 -3.89 16 22 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 23 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 24 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 25 C -0.13 -4.92 9.67 22.27 0.22 -4.70 16 26 C -0.20 -2.85 5.36 -10.79 -0.06 -2.91 16 27 C -0.17 -2.10 9.57 30.59 0.29 -1.80 16 28 C -0.16 -1.99 9.80 30.60 0.30 -1.70 16 29 H 0.08 1.22 6.98 -2.39 -0.02 1.20 16 30 H 0.06 1.04 6.57 -2.39 -0.02 1.02 16 31 H 0.07 1.08 7.07 -2.39 -0.02 1.07 16 32 H 0.39 5.78 9.04 -74.06 -0.67 5.11 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.41 9.97 7.00 -92.70 -0.65 9.32 16 36 H 0.40 14.15 8.62 -92.71 -0.80 13.35 16 37 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.12 3.83 7.73 -2.91 -0.02 3.81 16 41 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 43 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.11 4.11 8.04 -2.91 -0.02 4.09 16 45 H 0.11 1.57 8.11 -2.39 -0.02 1.55 16 46 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.11 1.21 5.85 -2.39 -0.01 1.20 16 48 H 0.09 1.29 7.61 -2.39 -0.02 1.27 16 49 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -71.90 402.45 -0.26 -72.16 By element: Atomic # 1 Polarization: 43.65 SS G_CDS: -1.14 Total: 42.50 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 4.90 Total: -12.25 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -4.07 Total: -106.41 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.98 Total: -42.09 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.90 -0.26 -72.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440255896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.733 kcal (2) G-P(sol) polarization free energy of solvation -71.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds