Wall clock time and date at job start Tue Mar 31 2020 17:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46698 * 2 1 4 4 C 1.53002 * 109.47280 * 119.99583 * 2 1 3 5 5 N 1.46506 * 109.47042 * 305.00643 * 4 2 1 6 6 C 1.34771 * 119.99515 * 180.02562 * 5 4 2 7 7 O 1.21583 * 120.00543 * 0.26795 * 6 5 4 8 8 N 1.34784 * 119.99547 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99971 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.46956 * 325.00197 * 9 8 6 11 11 C 1.52999 * 109.47155 * 205.00183 * 9 8 6 12 12 C 1.50699 * 109.47123 * 65.00154 * 11 9 8 13 13 H 1.08000 * 120.00148 * 359.97438 * 12 11 9 14 14 C 1.37875 * 119.99668 * 180.02562 * 12 11 9 15 15 N 1.31518 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00138 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47052 * 59.99759 * 16 14 12 18 18 H 1.48497 * 109.47369 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46757 * 300.00126 * 16 14 12 20 20 C 1.50701 * 109.47118 * 84.99565 * 9 8 6 21 21 C 1.38242 * 119.99723 * 39.73149 * 20 9 8 22 22 C 1.38237 * 119.99711 * 179.80885 * 21 20 9 23 23 C 1.38230 * 120.00188 * 0.39065 * 22 21 20 24 24 C 1.38239 * 120.00206 * 359.86275 * 23 22 21 25 25 C 1.38237 * 120.00201 * 219.99877 * 20 9 8 26 26 C 1.52999 * 109.47187 * 240.00016 * 2 1 3 27 27 C 1.53001 * 117.49952 * 128.62108 * 26 2 1 28 28 C 1.52994 * 60.00011 * 252.50811 * 27 26 2 29 29 H 1.08997 * 109.47507 * 300.00177 * 1 2 3 30 30 H 1.09001 * 109.47239 * 60.00420 * 1 2 3 31 31 H 1.08999 * 109.46729 * 180.02562 * 1 2 3 32 32 H 0.96702 * 113.99511 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47407 * 184.99976 * 4 2 1 34 34 H 1.09000 * 109.46986 * 65.00205 * 4 2 1 35 35 H 0.96999 * 120.00076 * 359.97438 * 5 4 2 36 36 H 0.96999 * 120.00044 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.46897 * 185.00130 * 11 9 8 38 38 H 1.08995 * 109.47110 * 304.99454 * 11 9 8 39 39 H 0.97002 * 119.99585 * 180.02562 * 15 14 12 40 40 H 1.08002 * 119.99647 * 359.97438 * 21 20 9 41 41 H 1.08000 * 119.99604 * 180.22896 * 22 21 20 42 42 H 1.07996 * 119.99963 * 179.83465 * 23 22 21 43 43 H 1.07994 * 120.00554 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.99841 * 359.97438 * 25 20 9 45 45 H 1.09003 * 115.54736 * 274.32366 * 26 2 1 46 46 H 1.09006 * 117.49925 * 359.97438 * 27 26 2 47 47 H 1.08997 * 117.49714 * 145.01156 * 27 26 2 48 48 H 1.08999 * 117.50103 * 252.51008 * 28 27 26 49 49 H 1.09004 * 117.49711 * 107.48645 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.4558 -0.1035 2.4424 6 6 1.7648 -0.5767 3.6660 7 8 2.5321 -1.5128 3.7799 8 7 1.2276 -0.0081 4.7637 9 6 1.5630 -0.5227 6.0937 10 1 1.6895 -1.6043 6.0435 11 6 0.4344 -0.1859 7.0703 12 6 -0.8177 -0.9192 6.6632 13 1 -0.8094 -1.5608 5.7946 14 6 -1.9740 -0.7699 7.3992 15 7 -1.9841 0.0119 8.4567 16 14 -3.5263 -1.6782 6.8943 17 1 -3.2731 -3.1413 6.9166 18 1 -4.6216 -1.3514 7.8423 19 1 -3.9179 -1.2644 5.5229 20 6 2.8448 0.1113 6.5691 21 6 3.0860 1.4503 6.3239 22 6 4.2600 2.0329 6.7635 23 6 5.1964 1.2747 7.4411 24 6 4.9575 -0.0655 7.6817 25 6 3.7818 -0.6472 7.2455 26 6 2.0400 -0.7212 -1.2492 27 6 3.0742 0.0052 -2.1117 28 6 1.6358 -0.1496 -2.6096 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.9703 1.4237 0.0004 33 1 3.1263 -0.6443 1.2952 34 1 1.7517 -1.7714 1.2057 35 1 0.8472 0.6463 2.3518 36 1 0.6190 0.7417 4.6730 37 1 0.7223 -0.4895 8.0768 38 1 0.2483 0.8879 7.0541 39 1 -2.7975 0.1165 8.9747 40 1 2.3560 2.0417 5.7913 41 1 4.4468 3.0798 6.5751 42 1 6.1147 1.7292 7.7821 43 1 5.6892 -0.6580 8.2107 44 1 3.5950 -1.6942 7.4336 45 1 2.1268 -1.8045 -1.1641 46 1 3.3909 0.9972 -1.7893 47 1 3.8417 -0.6001 -2.5940 48 1 1.4569 -0.8566 -3.4196 49 1 1.0065 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440255898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:55 Heat of formation + Delta-G solvation = -39.009642 kcal Electronic energy + Delta-G solvation = -28755.619968 eV Core-core repulsion = 24876.045133 eV Total energy + Delta-G solvation = -3879.574835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.10372 -39.34893 -38.41032 -35.70182 -35.12446 -34.05600 -32.70039 -31.46728 -30.53576 -30.27800 -28.72750 -26.79886 -24.83216 -23.15294 -22.59018 -22.23418 -21.89935 -20.63589 -20.22919 -19.72011 -18.10738 -17.29918 -16.83587 -16.16035 -16.07340 -15.52735 -15.38006 -14.80539 -14.61716 -14.50986 -14.40341 -14.06271 -13.71019 -13.33965 -13.02576 -12.92562 -12.87475 -12.55929 -12.52302 -12.41508 -12.07640 -12.04450 -11.67197 -11.49804 -11.25471 -11.10415 -10.88730 -10.83555 -10.68972 -10.60518 -10.41329 -10.40746 -10.13643 -9.73916 -9.63785 -9.27706 -8.86186 -8.49055 -8.43012 -8.24143 -8.11982 -6.06803 -4.09915 1.83311 1.85660 3.12001 3.29611 3.34788 3.37652 3.43967 3.75105 3.97465 4.24791 4.31413 4.41579 4.47898 4.58565 4.74873 4.87931 4.98142 5.05546 5.29795 5.30942 5.32571 5.33364 5.42369 5.50263 5.54896 5.60100 5.61451 5.72856 5.79345 5.81725 5.87841 5.96407 5.99362 6.04452 6.20673 6.41144 6.47913 6.63125 6.75281 6.89623 6.90380 7.01770 7.16456 7.36100 7.39604 7.46061 7.54977 7.72278 7.90337 8.28901 8.57947 8.95856 9.15747 9.54756 11.03751 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008027 B = 0.003844 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3487.578036 B = 7281.793270 C =10070.514455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.152 3.848 3 O -0.553 6.553 4 C 0.123 3.877 5 N -0.747 5.747 6 C 0.703 3.297 7 O -0.601 6.601 8 N -0.716 5.716 9 C 0.202 3.798 10 H 0.086 0.914 11 C 0.024 3.976 12 C -0.519 4.519 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.070 4.070 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.124 4.124 25 C -0.108 4.108 26 C -0.183 4.183 27 C -0.177 4.177 28 C -0.166 4.166 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.376 0.624 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.397 0.603 36 H 0.396 0.604 37 H 0.035 0.965 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.161 3.285 -16.369 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.110 3.890 3 O -0.360 6.360 4 C -0.003 4.003 5 N -0.404 5.404 6 C 0.403 3.597 7 O -0.480 6.480 8 N -0.368 5.368 9 C 0.097 3.903 10 H 0.104 0.896 11 C -0.013 4.013 12 C -0.557 4.557 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.071 4.071 21 C -0.124 4.124 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.202 4.202 27 C -0.214 4.214 28 C -0.203 4.203 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.225 0.775 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.232 0.768 36 H 0.230 0.770 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.118 0.882 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.096 2.600 -16.093 19.174 hybrid contribution -0.844 0.030 -0.262 0.884 sum 9.252 2.630 -16.355 18.974 Atomic orbital electron populations 1.21726 0.91739 1.02946 1.02971 1.20907 0.95213 0.81724 0.91116 1.86566 1.26945 1.25753 1.96785 1.21665 0.98030 0.97315 0.83256 1.44999 1.52661 1.38481 1.04308 1.15995 0.80874 0.82408 0.80419 1.90867 1.40249 1.30922 1.85928 1.45120 1.49764 1.37216 1.04718 1.20105 0.91421 0.97670 0.81068 0.89632 1.19388 0.90763 0.97622 0.93552 1.21105 0.94663 1.27738 1.12189 0.92433 1.24986 0.98923 0.95309 0.94937 1.69953 1.28286 1.37754 1.17171 0.86655 0.82703 0.80368 0.78251 1.20242 1.21338 1.20315 1.20613 0.96321 0.93981 0.96196 1.20895 0.96926 0.94706 0.99916 1.21031 0.94664 0.99283 0.99429 1.20977 0.99272 0.94465 1.00714 1.21033 0.97385 0.95139 1.00614 1.21020 0.93460 0.99854 0.98334 1.22968 1.05073 0.99988 0.92142 1.22978 0.92705 1.02151 1.03597 1.22885 0.97987 1.03192 0.96226 0.91504 0.91638 0.90720 0.77499 0.91717 0.91067 0.76792 0.76983 0.94728 0.95776 0.92847 0.86657 0.86841 0.86928 0.86675 0.86213 0.86926 0.88235 0.88763 0.88892 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.46 37.16 0.31 -0.99 16 2 C 0.15 1.41 0.88 -90.62 -0.08 1.33 16 3 O -0.55 -5.22 12.08 -35.23 -0.43 -5.65 16 4 C 0.12 1.47 4.80 -4.04 -0.02 1.45 16 5 N -0.75 -10.49 5.19 -65.22 -0.34 -10.83 16 6 C 0.70 12.95 8.52 -86.92 -0.74 12.21 16 7 O -0.60 -13.23 16.01 5.29 0.08 -13.14 16 8 N -0.72 -13.26 4.02 -59.81 -0.24 -13.50 16 9 C 0.20 4.21 2.11 -69.08 -0.15 4.07 16 10 H 0.09 1.96 7.44 -51.92 -0.39 1.58 16 11 C 0.02 0.58 4.50 -27.88 -0.13 0.46 16 12 C -0.52 -13.82 8.84 -34.44 -0.30 -14.12 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.07 -1.33 4.92 -104.62 -0.51 -1.84 16 21 C -0.11 -1.84 9.33 -39.58 -0.37 -2.21 16 22 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 23 C -0.14 -2.00 10.05 -39.58 -0.40 -2.39 16 24 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 25 C -0.11 -1.94 9.67 -39.58 -0.38 -2.32 16 26 C -0.18 -1.46 5.15 -90.62 -0.47 -1.93 16 27 C -0.18 -1.23 9.74 -26.73 -0.26 -1.49 16 28 C -0.17 -1.21 9.67 -26.74 -0.26 -1.47 16 29 H 0.07 0.68 6.57 -51.93 -0.34 0.34 16 30 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.38 2.69 7.57 45.56 0.34 3.04 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 4.94 7.00 -40.82 -0.29 4.65 16 36 H 0.40 6.77 8.62 -40.82 -0.35 6.42 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.12 1.89 7.71 -52.49 -0.40 1.48 16 41 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 42 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 44 H 0.12 2.06 8.04 -52.49 -0.42 1.64 16 45 H 0.11 0.89 8.11 -51.93 -0.42 0.46 16 46 H 0.10 0.64 6.38 -51.93 -0.33 0.31 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.77 7.61 -51.93 -0.40 0.37 16 LS Contribution 403.17 15.07 6.08 6.08 Total: -1.00 -32.28 403.17 -10.91 -43.19 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -7.14 Total: 15.04 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -4.64 Total: -12.34 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.16 Total: -49.30 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.34 Total: -18.79 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.28 -10.91 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440255898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.182 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds