Wall clock time and date at job start Tue Mar 31 2020 17:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46505 * 109.46707 * 60.00045 * 4 2 1 6 6 C 1.34783 * 119.99576 * 179.97438 * 5 4 2 7 7 O 1.21583 * 120.00184 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99644 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99847 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47159 * 325.00053 * 9 8 6 11 11 C 1.52999 * 109.47278 * 205.00081 * 9 8 6 12 12 C 1.50698 * 109.47511 * 64.99606 * 11 9 8 13 13 H 1.07998 * 119.99652 * 0.02562 * 12 11 9 14 14 C 1.37875 * 120.00433 * 180.02562 * 12 11 9 15 15 N 1.31514 * 119.99927 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00073 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47209 * 89.99905 * 16 14 12 18 18 H 1.48503 * 109.47095 * 209.99950 * 16 14 12 19 19 H 1.48504 * 109.47046 * 329.99635 * 16 14 12 20 20 C 1.50698 * 109.47589 * 84.99736 * 9 8 6 21 21 C 1.38236 * 119.99550 * 39.72735 * 20 9 8 22 22 C 1.38237 * 119.99939 * 179.79267 * 21 20 9 23 23 C 1.38233 * 120.00102 * 0.43689 * 22 21 20 24 24 C 1.38238 * 119.99670 * 359.81572 * 23 22 21 25 25 C 1.38227 * 120.00644 * 220.00016 * 20 9 8 26 26 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 27 27 C 1.53001 * 117.51964 * 231.28841 * 26 2 1 28 28 C 1.52999 * 60.00190 * 107.47982 * 27 26 2 29 29 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 30 30 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 31 31 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 32 32 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 35 35 H 0.96993 * 120.00197 * 359.97438 * 5 4 2 36 36 H 0.97001 * 120.00121 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47549 * 185.00375 * 11 9 8 38 38 H 1.09004 * 109.46653 * 304.99885 * 11 9 8 39 39 H 0.97000 * 119.99889 * 179.97438 * 15 14 12 40 40 H 1.07999 * 120.00474 * 359.97438 * 21 20 9 41 41 H 1.07998 * 120.00302 * 180.27473 * 22 21 20 42 42 H 1.08001 * 120.00368 * 179.83608 * 23 22 21 43 43 H 1.07998 * 119.99917 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.99655 * 359.97438 * 25 20 9 45 45 H 1.09002 * 115.54973 * 85.58625 * 26 2 1 46 46 H 1.09001 * 117.49733 * 214.97413 * 27 26 2 47 47 H 1.08995 * 117.49577 * 359.97438 * 27 26 2 48 48 H 1.09004 * 117.50150 * 252.51496 * 28 27 26 49 49 H 1.09004 * 117.49681 * 107.48417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5517 -0.0306 -2.4454 6 6 1.8779 -0.4908 -3.6695 7 8 2.5777 -1.4788 -3.7810 8 7 1.4291 0.1448 -4.7699 9 6 1.7831 -0.3557 -6.1005 10 1 2.7934 -0.7642 -6.0781 11 6 1.7192 0.7916 -7.1106 12 6 2.7736 1.8149 -6.7760 13 1 3.4246 1.6620 -5.9280 14 6 2.9074 2.9463 -7.5526 15 7 2.1150 3.1323 -8.5856 16 14 4.2149 4.2144 -7.1382 17 1 5.4738 3.8783 -7.8505 18 1 3.7510 5.5602 -7.5611 19 1 4.4594 4.2128 -5.6734 20 6 0.8135 -1.4360 -6.5053 21 6 -0.5306 -1.3042 -6.2104 22 6 -1.4207 -2.2931 -6.5854 23 6 -0.9655 -3.4180 -7.2474 24 6 0.3794 -3.5522 -7.5377 25 6 1.2688 -2.5613 -7.1664 26 6 2.0400 -0.7212 1.2493 27 6 3.0757 0.0040 2.1109 28 6 1.6373 -0.1482 2.6097 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.9702 1.4238 0.0004 33 1 3.1301 -0.7208 -1.2493 34 1 1.6767 -1.7489 -1.2492 35 1 0.9938 0.7577 -2.3564 36 1 0.8717 0.9337 -4.6809 37 1 1.8953 0.4029 -8.1136 38 1 0.7346 1.2576 -7.0693 39 1 2.2089 3.9285 -9.1317 40 1 -0.8858 -0.4273 -5.6895 41 1 -2.4715 -2.1881 -6.3590 42 1 -1.6605 -4.1919 -7.5381 43 1 0.7352 -4.4312 -8.0545 44 1 2.3195 -2.6661 -7.3933 45 1 2.1253 -1.8046 1.1648 46 1 3.8425 -0.6023 2.5932 47 1 3.3942 0.9949 1.7876 48 1 1.0093 0.7428 2.6145 49 1 1.4577 -0.8547 3.4201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440255900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:03 Heat of formation + Delta-G solvation = -39.747502 kcal Electronic energy + Delta-G solvation = -28754.397948 eV Core-core repulsion = 24874.791117 eV Total energy + Delta-G solvation = -3879.606831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.09248 -39.34477 -38.41013 -35.69305 -35.11381 -34.01145 -32.69689 -31.49114 -30.55548 -30.29523 -28.72979 -26.77108 -24.82746 -23.15585 -22.58026 -22.23761 -21.90171 -20.65073 -20.21143 -19.71538 -18.08749 -17.28676 -16.84427 -16.15204 -16.05280 -15.62145 -15.26106 -14.83379 -14.61888 -14.50974 -14.37604 -14.08017 -13.69385 -13.34646 -13.05004 -12.93161 -12.84967 -12.59994 -12.51783 -12.42901 -12.08189 -12.04194 -11.67665 -11.49486 -11.24463 -11.09150 -10.89822 -10.82551 -10.70175 -10.58087 -10.42150 -10.39737 -10.12426 -9.73807 -9.63720 -9.25997 -8.85730 -8.49324 -8.43014 -8.24004 -8.12313 -6.06458 -4.09398 1.82890 1.85147 3.11815 3.29301 3.36077 3.39465 3.44459 3.75944 3.99446 4.24733 4.31957 4.42266 4.48001 4.59010 4.75014 4.88482 4.98362 5.05079 5.30265 5.30581 5.32038 5.34710 5.41996 5.49339 5.51995 5.59174 5.61597 5.72935 5.77244 5.83074 5.87690 5.95893 5.98927 6.00855 6.20567 6.40759 6.47541 6.63091 6.75589 6.89052 6.89996 7.01773 7.16325 7.37682 7.42049 7.45592 7.55354 7.72409 7.90859 8.29335 8.58481 8.96614 9.16091 9.55402 11.04140 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.007882 B = 0.003878 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3551.427986 B = 7218.779873 C =10020.044774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.151 3.849 3 O -0.553 6.553 4 C 0.122 3.878 5 N -0.746 5.746 6 C 0.703 3.297 7 O -0.601 6.601 8 N -0.716 5.716 9 C 0.202 3.798 10 H 0.086 0.914 11 C 0.024 3.976 12 C -0.518 4.518 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.070 4.070 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.108 4.108 26 C -0.183 4.183 27 C -0.177 4.177 28 C -0.166 4.166 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.378 0.622 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.397 0.603 36 H 0.396 0.604 37 H 0.034 0.966 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 -8.379 16.861 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.110 3.890 3 O -0.360 6.360 4 C -0.003 4.003 5 N -0.404 5.404 6 C 0.403 3.597 7 O -0.480 6.480 8 N -0.368 5.368 9 C 0.097 3.903 10 H 0.104 0.896 11 C -0.014 4.014 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.071 4.071 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.202 4.202 27 C -0.214 4.214 28 C -0.203 4.203 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.227 0.773 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.230 0.770 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.130 0.870 46 H 0.113 0.887 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.170 -9.028 16.590 19.583 hybrid contribution 0.818 1.289 0.194 1.539 sum -4.352 -7.739 16.785 18.988 Atomic orbital electron populations 1.21712 0.91896 1.02679 1.02940 1.20902 0.95113 0.81894 0.91102 1.86560 1.27179 1.25538 1.96743 1.21663 0.99261 0.96190 0.83214 1.44956 1.57738 1.33620 1.04068 1.15991 0.80315 0.82949 0.80428 1.90866 1.43068 1.28036 1.86019 1.45114 1.55452 1.31714 1.04519 1.20102 0.95601 0.93248 0.81313 0.89636 1.19394 0.97980 0.90808 0.93173 1.21139 1.17150 1.04347 1.12951 0.92388 1.24985 0.96037 0.98160 0.94995 1.69961 1.38184 1.27890 1.17138 0.86595 0.81971 0.80751 0.78692 1.20664 1.21291 1.19927 1.20612 0.94933 0.95451 0.96108 1.20890 0.92944 0.98621 1.00018 1.21030 0.99043 0.94658 0.99682 1.20979 0.95639 0.98115 1.00698 1.21034 0.93557 0.98898 1.00667 1.21017 0.99721 0.93372 0.98553 1.22961 1.05155 0.99941 0.92148 1.22982 0.92657 1.02243 1.03513 1.22886 0.98089 1.03159 0.96173 0.91663 0.91616 0.90906 0.77273 0.91653 0.91161 0.76776 0.76974 0.94733 0.95774 0.92916 0.86666 0.86845 0.86924 0.86671 0.86209 0.86979 0.88746 0.88172 0.88365 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.51 37.16 0.32 -0.88 16 2 C 0.15 1.41 0.86 -90.62 -0.08 1.33 16 3 O -0.55 -5.55 11.88 -35.23 -0.42 -5.97 16 4 C 0.12 1.47 4.77 -4.04 -0.02 1.45 16 5 N -0.75 -10.48 5.15 -65.23 -0.34 -10.81 16 6 C 0.70 12.96 8.52 -86.92 -0.74 12.21 16 7 O -0.60 -13.24 16.00 5.29 0.08 -13.16 16 8 N -0.72 -13.25 4.02 -59.81 -0.24 -13.49 16 9 C 0.20 4.21 2.12 -69.08 -0.15 4.07 16 10 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 11 C 0.02 0.58 4.50 -27.88 -0.13 0.45 16 12 C -0.52 -13.84 8.84 -34.44 -0.30 -14.14 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.07 -1.32 4.91 -104.63 -0.51 -1.84 16 21 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 22 C -0.13 -1.92 10.05 -39.58 -0.40 -2.31 16 23 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 24 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 25 C -0.11 -1.93 9.67 -39.59 -0.38 -2.32 16 26 C -0.18 -1.46 5.15 -90.61 -0.47 -1.93 16 27 C -0.18 -1.28 9.74 -26.73 -0.26 -1.54 16 28 C -0.17 -1.21 9.67 -26.73 -0.26 -1.47 16 29 H 0.06 0.55 7.29 -51.93 -0.38 0.17 16 30 H 0.06 0.62 6.86 -51.93 -0.36 0.26 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.38 3.09 7.56 45.56 0.34 3.43 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.40 4.96 7.21 -40.82 -0.29 4.67 16 36 H 0.40 6.77 8.62 -40.82 -0.35 6.42 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.12 1.86 7.71 -52.49 -0.40 1.46 16 41 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.12 2.06 8.04 -52.49 -0.42 1.64 16 45 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.10 0.70 6.38 -51.93 -0.33 0.37 16 48 H 0.10 0.76 7.61 -51.93 -0.40 0.37 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 403.43 15.07 6.08 6.08 Total: -1.00 -32.39 403.43 -10.92 -43.31 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -7.17 Total: 15.11 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -4.64 Total: -12.26 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.16 Total: -49.33 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.33 Total: -19.13 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.39 -10.92 -43.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440255900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.566 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds