Wall clock time and date at job start Tue Mar 31 2020 17:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46505 * 109.46707 * 60.00045 * 4 2 1 6 6 C 1.34783 * 119.99576 * 179.97438 * 5 4 2 7 7 O 1.21583 * 120.00184 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99644 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99847 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47159 * 325.00053 * 9 8 6 11 11 C 1.52999 * 109.47278 * 205.00081 * 9 8 6 12 12 C 1.50698 * 109.47511 * 64.99606 * 11 9 8 13 13 H 1.07998 * 119.99652 * 0.02562 * 12 11 9 14 14 C 1.37875 * 120.00433 * 180.02562 * 12 11 9 15 15 N 1.31514 * 119.99927 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00073 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47209 * 89.99905 * 16 14 12 18 18 H 1.48503 * 109.47095 * 209.99950 * 16 14 12 19 19 H 1.48504 * 109.47046 * 329.99635 * 16 14 12 20 20 C 1.50698 * 109.47589 * 84.99736 * 9 8 6 21 21 C 1.38236 * 119.99550 * 39.72735 * 20 9 8 22 22 C 1.38237 * 119.99939 * 179.79267 * 21 20 9 23 23 C 1.38233 * 120.00102 * 0.43689 * 22 21 20 24 24 C 1.38238 * 119.99670 * 359.81572 * 23 22 21 25 25 C 1.38227 * 120.00644 * 220.00016 * 20 9 8 26 26 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 27 27 C 1.53001 * 117.51964 * 231.28841 * 26 2 1 28 28 C 1.52999 * 60.00190 * 107.47982 * 27 26 2 29 29 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 30 30 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 31 31 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 32 32 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 35 35 H 0.96993 * 120.00197 * 359.97438 * 5 4 2 36 36 H 0.97001 * 120.00121 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47549 * 185.00375 * 11 9 8 38 38 H 1.09004 * 109.46653 * 304.99885 * 11 9 8 39 39 H 0.97000 * 119.99889 * 179.97438 * 15 14 12 40 40 H 1.07999 * 120.00474 * 359.97438 * 21 20 9 41 41 H 1.07998 * 120.00302 * 180.27473 * 22 21 20 42 42 H 1.08001 * 120.00368 * 179.83608 * 23 22 21 43 43 H 1.07998 * 119.99917 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.99655 * 359.97438 * 25 20 9 45 45 H 1.09002 * 115.54973 * 85.58625 * 26 2 1 46 46 H 1.09001 * 117.49733 * 214.97413 * 27 26 2 47 47 H 1.08995 * 117.49577 * 359.97438 * 27 26 2 48 48 H 1.09004 * 117.50150 * 252.51496 * 28 27 26 49 49 H 1.09004 * 117.49681 * 107.48417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5517 -0.0306 -2.4454 6 6 1.8779 -0.4908 -3.6695 7 8 2.5777 -1.4788 -3.7810 8 7 1.4291 0.1448 -4.7699 9 6 1.7831 -0.3557 -6.1005 10 1 2.7934 -0.7642 -6.0781 11 6 1.7192 0.7916 -7.1106 12 6 2.7736 1.8149 -6.7760 13 1 3.4246 1.6620 -5.9280 14 6 2.9074 2.9463 -7.5526 15 7 2.1150 3.1323 -8.5856 16 14 4.2149 4.2144 -7.1382 17 1 5.4738 3.8783 -7.8505 18 1 3.7510 5.5602 -7.5611 19 1 4.4594 4.2128 -5.6734 20 6 0.8135 -1.4360 -6.5053 21 6 -0.5306 -1.3042 -6.2104 22 6 -1.4207 -2.2931 -6.5854 23 6 -0.9655 -3.4180 -7.2474 24 6 0.3794 -3.5522 -7.5377 25 6 1.2688 -2.5613 -7.1664 26 6 2.0400 -0.7212 1.2493 27 6 3.0757 0.0040 2.1109 28 6 1.6373 -0.1482 2.6097 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.9702 1.4238 0.0004 33 1 3.1301 -0.7208 -1.2493 34 1 1.6767 -1.7489 -1.2492 35 1 0.9938 0.7577 -2.3564 36 1 0.8717 0.9337 -4.6809 37 1 1.8953 0.4029 -8.1136 38 1 0.7346 1.2576 -7.0693 39 1 2.2089 3.9285 -9.1317 40 1 -0.8858 -0.4273 -5.6895 41 1 -2.4715 -2.1881 -6.3590 42 1 -1.6605 -4.1919 -7.5381 43 1 0.7352 -4.4312 -8.0545 44 1 2.3195 -2.6661 -7.3933 45 1 2.1253 -1.8046 1.1648 46 1 3.8425 -0.6023 2.5932 47 1 3.3942 0.9949 1.7876 48 1 1.0093 0.7428 2.6145 49 1 1.4577 -0.8547 3.4201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440255900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:02 Heat of formation + Delta-G solvation = -60.382941 kcal Electronic energy + Delta-G solvation = -28755.292768 eV Core-core repulsion = 24874.791117 eV Total energy + Delta-G solvation = -3880.501651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34544 -40.39018 -39.65937 -36.94057 -36.24434 -35.18948 -34.70382 -32.74258 -31.74209 -31.45037 -30.49128 -27.80805 -26.54246 -24.10352 -23.76071 -23.30844 -23.13694 -22.00179 -21.31320 -20.92179 -19.43830 -18.65053 -18.07213 -17.67299 -17.17566 -16.80342 -16.51476 -16.41624 -16.07612 -15.76485 -15.46185 -15.08369 -14.93722 -14.78068 -14.45642 -14.17317 -14.13387 -13.67168 -13.64217 -13.53899 -13.41208 -13.27986 -12.91589 -12.86231 -12.64305 -12.45106 -12.27014 -12.13198 -11.96800 -11.85940 -11.57621 -11.44050 -11.32333 -11.30888 -11.03768 -10.82280 -10.58374 -10.27674 -9.75617 -9.67893 -9.48945 -8.19739 -6.29586 0.53084 0.57818 1.39371 1.40656 1.50933 1.81401 2.26888 2.40297 2.83168 2.96913 3.13252 3.22018 3.47245 3.58528 3.78988 3.93450 4.02400 4.05552 4.12740 4.22536 4.25222 4.33696 4.38564 4.45653 4.63725 4.67234 4.75168 4.78727 4.80897 4.81283 4.88251 4.93577 5.06815 5.14597 5.21713 5.23549 5.29370 5.30316 5.30483 5.44097 5.53962 5.62865 5.64438 5.66136 5.78984 5.89991 6.13127 6.17968 6.22674 6.70439 6.82803 7.18642 7.39307 7.69123 8.91006 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.007882 B = 0.003878 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3551.427986 B = 7218.779873 C =10020.044774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.162 3.838 3 O -0.563 6.563 4 C 0.121 3.879 5 N -0.729 5.729 6 C 0.701 3.299 7 O -0.639 6.639 8 N -0.712 5.712 9 C 0.219 3.781 10 H 0.055 0.945 11 C 0.039 3.961 12 C -0.528 4.528 13 H 0.052 0.948 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.957 3.043 17 H -0.278 1.278 18 H -0.280 1.280 19 H -0.268 1.268 20 C -0.097 4.097 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.190 4.190 27 C -0.177 4.177 28 C -0.160 4.160 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.386 0.614 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.407 0.593 36 H 0.403 0.597 37 H 0.005 0.995 38 H 0.012 0.988 39 H 0.264 0.736 40 H 0.119 0.881 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 -8.859 18.359 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.121 3.879 3 O -0.371 6.371 4 C -0.003 4.003 5 N -0.386 5.386 6 C 0.401 3.599 7 O -0.521 6.521 8 N -0.365 5.365 9 C 0.113 3.887 10 H 0.073 0.927 11 C 0.001 3.999 12 C -0.566 4.566 13 H 0.070 0.930 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.782 3.218 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.098 4.098 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.152 4.152 26 C -0.209 4.209 27 C -0.214 4.214 28 C -0.197 4.197 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.236 0.764 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.238 0.762 37 H 0.023 0.977 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.112 0.888 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.302 -9.485 18.130 21.409 hybrid contribution 1.136 1.379 -0.276 1.807 sum -5.167 -8.106 17.854 20.277 Atomic orbital electron populations 1.21746 0.91387 1.03234 1.02976 1.20799 0.95385 0.81484 0.90264 1.86546 1.28019 1.25836 1.96702 1.21832 0.98745 0.96360 0.83406 1.44847 1.56940 1.33578 1.03215 1.16109 0.79960 0.82526 0.81292 1.90834 1.44818 1.29776 1.86675 1.44920 1.55552 1.32007 1.04004 1.19564 0.95030 0.92508 0.81560 0.92676 1.19126 0.96559 0.91436 0.92738 1.21382 1.17474 1.05032 1.12679 0.93020 1.25768 0.98035 1.00143 0.94816 1.70070 1.39770 1.28641 1.18097 0.85577 0.79220 0.78327 0.78671 1.20402 1.20559 1.19233 1.20489 0.95492 0.95632 0.98214 1.21043 0.92499 0.99722 1.00555 1.21431 1.00270 0.93956 0.98635 1.21462 0.95752 0.98540 0.99004 1.21383 0.93838 0.98906 1.00057 1.21175 1.00178 0.94302 0.99578 1.22886 1.06176 1.00024 0.91791 1.23068 0.92926 1.02315 1.03062 1.22926 0.97903 1.03071 0.95759 0.90888 0.92293 0.90140 0.76425 0.92625 0.91485 0.75626 0.76193 0.97709 0.96975 0.92725 0.86303 0.83638 0.83099 0.83858 0.87010 0.86640 0.87917 0.88067 0.88769 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.51 71.98 0.61 -1.61 16 2 C 0.16 2.84 0.86 -10.79 -0.01 2.83 16 3 O -0.56 -10.63 11.88 -148.98 -1.77 -12.40 16 4 C 0.12 2.88 4.77 86.38 0.41 3.29 16 5 N -0.73 -20.46 5.15 -478.53 -2.47 -22.93 16 6 C 0.70 26.48 8.52 179.05 1.53 28.01 16 7 O -0.64 -29.13 16.00 -3.98 -0.06 -29.19 16 8 N -0.71 -27.32 4.02 -461.42 -1.86 -29.18 16 9 C 0.22 9.64 2.12 44.24 0.09 9.73 16 10 H 0.06 2.72 7.44 -2.39 -0.02 2.71 16 11 C 0.04 1.99 4.50 29.85 0.13 2.12 16 12 C -0.53 -29.09 8.84 25.60 0.23 -28.87 16 13 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 14 C 0.01 0.61 5.46 84.65 0.46 1.07 16 15 N -0.93 -54.45 13.29 21.45 0.28 -54.17 16 16 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 C -0.10 -3.81 4.91 -19.87 -0.10 -3.91 16 21 C -0.12 -4.10 9.33 22.27 0.21 -3.90 16 22 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 23 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 24 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 25 C -0.13 -4.91 9.67 22.27 0.22 -4.70 16 26 C -0.19 -2.75 5.15 -10.79 -0.06 -2.80 16 27 C -0.18 -2.27 9.74 30.59 0.30 -1.97 16 28 C -0.16 -2.01 9.67 30.60 0.30 -1.71 16 29 H 0.07 1.09 7.29 -2.39 -0.02 1.07 16 30 H 0.06 1.03 6.86 -2.39 -0.02 1.02 16 31 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.39 5.91 7.56 -74.06 -0.56 5.35 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.41 9.97 7.21 -92.71 -0.67 9.30 16 36 H 0.40 14.15 8.62 -92.71 -0.80 13.36 16 37 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.12 3.84 7.71 -2.91 -0.02 3.82 16 41 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 42 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 43 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 44 H 0.11 4.11 8.04 -2.91 -0.02 4.09 16 45 H 0.12 1.61 8.11 -2.39 -0.02 1.59 16 46 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.10 1.27 6.38 -2.39 -0.02 1.26 16 48 H 0.09 1.28 7.61 -2.39 -0.02 1.27 16 49 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -71.23 403.43 0.09 -71.14 By element: Atomic # 1 Polarization: 44.12 SS G_CDS: -1.06 Total: 43.06 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.99 Total: -12.29 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -4.04 Total: -106.27 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.83 Total: -41.59 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.23 0.09 -71.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440255900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.755 kcal (2) G-P(sol) polarization free energy of solvation -71.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds