Wall clock time and date at job start Tue Mar 31 2020 16:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47309 * 2 1 4 4 N 1.46904 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.47840 * 111.00126 * 54.96437 * 4 3 2 6 6 C 1.54912 * 104.79460 * 146.36546 * 5 4 3 7 7 C 1.55143 * 101.65216 * 322.93013 * 6 5 4 8 8 C 1.47442 * 110.99827 * 175.80946 * 4 3 2 9 9 H 1.09006 * 109.89097 * 117.17269 * 8 4 3 10 10 C 1.52997 * 109.89043 * 356.14616 * 8 4 3 11 11 N 1.46504 * 109.47455 * 175.95369 * 10 8 4 12 12 S 1.65597 * 120.00228 * 163.01756 * 11 10 8 13 13 O 1.42102 * 104.27600 * 308.92329 * 12 11 10 14 14 O 1.42102 * 104.27774 * 181.07537 * 12 11 10 15 15 C 1.81399 * 104.45176 * 64.99966 * 12 11 10 16 16 C 1.52999 * 109.46939 * 180.02562 * 15 12 11 17 17 C 1.53000 * 109.47409 * 60.00165 * 16 15 12 18 18 C 1.52988 * 109.47282 * 299.99717 * 16 15 12 19 19 C 1.50705 * 109.46980 * 179.97438 * 16 15 12 20 20 H 1.07999 * 119.99704 * 359.97438 * 19 16 15 21 21 C 1.37870 * 120.00341 * 180.02562 * 19 16 15 22 22 N 1.31521 * 119.99508 * 0.02562 * 21 19 16 23 23 Si 1.86794 * 120.00414 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47176 * 89.99815 * 23 21 19 25 25 H 1.48503 * 109.47198 * 209.99878 * 23 21 19 26 26 H 1.48499 * 109.46938 * 329.99737 * 23 21 19 27 27 H 1.09003 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46962 * 299.99670 * 1 2 3 29 29 H 1.08993 * 109.47297 * 59.99834 * 1 2 3 30 30 H 1.09004 * 109.47173 * 239.99820 * 2 1 3 31 31 H 1.09005 * 109.47565 * 119.99864 * 2 1 3 32 32 H 1.08995 * 109.47381 * 60.00006 * 3 2 1 33 33 H 1.09007 * 109.46740 * 299.99851 * 3 2 1 34 34 H 1.09003 * 110.37128 * 265.19247 * 5 4 3 35 35 H 1.08999 * 110.37488 * 27.42911 * 5 4 3 36 36 H 1.09001 * 110.99078 * 81.01756 * 6 5 4 37 37 H 1.09000 * 110.98847 * 204.83476 * 6 5 4 38 38 H 1.09004 * 110.70271 * 277.27398 * 7 6 5 39 39 H 1.09002 * 110.70382 * 154.03489 * 7 6 5 40 40 H 1.09004 * 109.47363 * 55.95113 * 10 8 4 41 41 H 1.08999 * 109.47156 * 295.95339 * 10 8 4 42 42 H 0.96998 * 119.99325 * 343.01590 * 11 10 8 43 43 H 1.08995 * 109.46988 * 59.99658 * 15 12 11 44 44 H 1.09005 * 109.46572 * 299.99872 * 15 12 11 45 45 H 1.08993 * 109.47700 * 179.97438 * 17 16 15 46 46 H 1.09000 * 109.46816 * 299.99881 * 17 16 15 47 47 H 1.09005 * 109.47541 * 59.99305 * 17 16 15 48 48 H 1.08997 * 109.47693 * 300.00330 * 18 16 15 49 49 H 1.09001 * 109.47155 * 60.00630 * 18 16 15 50 50 H 1.09003 * 109.47570 * 179.97438 * 18 16 15 51 51 H 0.97005 * 119.99788 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0384 0.6503 -1.1311 6 6 5.3442 1.3741 -1.5442 7 6 4.9554 2.8622 -1.3407 8 6 4.0374 2.8153 -0.1012 9 1 4.6077 3.0598 0.7950 10 6 2.8837 3.8059 -0.2701 11 7 3.4102 5.1731 -0.2722 12 16 2.4820 6.4171 -0.8493 13 8 2.0474 5.9673 -2.1253 14 8 3.3122 7.5630 -0.7202 15 6 1.0839 6.5109 0.3028 16 6 0.1420 7.6366 -0.1289 17 6 -0.3779 7.3538 -1.5398 18 6 0.8990 8.9660 -0.1214 19 6 -1.0198 7.7142 0.8278 20 1 -1.0805 7.0287 1.6602 21 6 -2.0058 8.6593 0.6399 22 7 -1.9326 9.4930 -0.3747 23 14 -3.4455 8.7559 1.8261 24 1 -3.1117 9.6856 2.9350 25 1 -4.6463 9.2532 1.1077 26 1 -3.7230 7.4058 2.3786 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 4.2544 -0.3693 -0.8116 35 1 3.3274 0.6458 -1.9572 36 1 6.1699 1.0935 -0.8903 37 1 5.5886 1.1735 -2.5873 38 1 4.4135 3.2409 -2.2074 39 1 5.8397 3.4680 -1.1427 40 1 2.1804 3.6887 0.5544 41 1 2.3733 3.6118 -1.2134 42 1 4.3026 5.3495 0.0645 43 1 1.4543 6.7119 1.3080 44 1 0.5443 5.5638 0.2970 45 1 -1.0493 8.1555 -1.8473 46 1 0.4622 7.2974 -2.2321 47 1 -0.9173 6.4065 -1.5453 48 1 1.2694 9.1676 0.8837 49 1 1.7391 8.9098 -0.8137 50 1 0.2282 9.7681 -0.4294 51 1 -2.6261 10.1583 -0.5068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451536071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:17 Heat of formation + Delta-G solvation = -77.414729 kcal Electronic energy + Delta-G solvation = -28622.452343 eV Core-core repulsion = 24876.656090 eV Total energy + Delta-G solvation = -3745.796253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.98722 -36.56282 -36.29159 -35.40075 -35.13840 -34.43941 -31.68102 -31.09074 -29.50903 -26.64738 -25.73304 -25.65643 -25.26104 -24.87548 -22.46752 -20.96316 -19.82831 -19.50733 -18.80826 -17.33836 -16.66001 -16.22967 -15.86930 -15.57650 -15.35044 -15.32629 -14.75439 -14.66107 -14.44093 -13.71583 -13.67340 -13.17881 -13.03374 -12.92466 -12.56433 -12.52389 -12.35177 -12.13224 -12.09587 -11.74051 -11.47567 -11.43629 -11.37367 -11.26982 -11.08320 -11.05904 -11.03354 -10.94866 -10.88971 -10.81541 -10.72036 -10.39793 -10.29327 -10.12349 -9.67370 -9.63916 -9.24821 -8.69127 -8.50591 -8.41491 -6.04795 -4.16857 0.84404 3.14379 3.24806 3.32153 3.34029 3.73497 4.25736 4.31661 4.36754 4.44751 4.54005 4.76874 4.80636 4.84699 4.91248 5.12322 5.14726 5.20063 5.20605 5.30266 5.35246 5.41794 5.51871 5.56920 5.61916 5.63479 5.67710 5.68738 5.76331 5.81797 5.86632 5.92548 6.01589 6.10137 6.12593 6.35744 6.68383 6.72544 6.77984 6.83008 6.88981 7.00357 7.11443 7.29869 7.48781 7.66414 7.96464 8.08009 8.31423 8.81612 9.48668 10.96540 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.003597 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.413901 B = 7781.684562 C = 9259.388089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.033 3.967 4 N -0.520 5.520 5 C 0.039 3.961 6 C -0.131 4.131 7 C -0.140 4.140 8 C 0.068 3.932 9 H 0.094 0.906 10 C 0.099 3.901 11 N -1.128 6.128 12 S 2.594 3.406 13 O -0.965 6.965 14 O -0.965 6.965 15 C -0.581 4.581 16 C 0.082 3.918 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.502 4.502 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.884 5.884 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.411 0.589 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.095 0.905 46 H 0.028 0.972 47 H 0.035 0.965 48 H 0.036 0.964 49 H 0.027 0.973 50 H 0.095 0.905 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.975 -17.399 0.113 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.094 4.094 4 N -0.245 5.245 5 C -0.088 4.088 6 C -0.169 4.169 7 C -0.179 4.179 8 C -0.041 4.041 9 H 0.112 0.888 10 C -0.029 4.029 11 N -0.885 5.885 12 S 2.692 3.308 13 O -0.955 6.955 14 O -0.955 6.955 15 C -0.715 4.715 16 C 0.080 3.920 17 C -0.221 4.221 18 C -0.221 4.221 19 C -0.541 4.541 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.522 5.522 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.244 0.756 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.114 0.886 46 H 0.046 0.954 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.114 0.886 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.064 -17.021 -0.364 20.304 hybrid contribution -1.072 0.259 0.705 1.309 sum 9.992 -16.762 0.341 19.517 Atomic orbital electron populations 1.21758 0.95354 1.01752 1.02343 1.21571 0.95827 0.96156 1.02415 1.22560 0.87401 0.97640 1.01832 1.63855 1.07986 1.09876 1.42741 1.23095 0.95535 0.98128 0.92056 1.22714 0.97688 0.94888 1.01568 1.22903 0.99911 0.96946 0.98099 1.22629 0.94929 0.87430 0.99107 0.88821 1.21968 0.96855 0.81646 1.02417 1.55791 1.29640 1.19885 1.83170 1.05594 0.76181 0.72486 0.76543 1.93534 1.82912 1.80874 1.38185 1.93555 1.66346 1.48145 1.87439 1.30518 1.16214 1.09838 1.14938 1.17930 0.91957 0.87520 0.94632 1.22269 1.01253 1.02441 0.96115 1.22271 0.98621 1.01802 0.99441 1.20937 1.05302 1.17023 1.10868 0.92318 1.24938 0.97985 0.95369 0.95446 1.69807 1.34185 1.19450 1.28722 0.86535 0.81883 0.78306 0.80913 1.20635 1.21125 1.19948 0.92619 0.92358 0.92538 0.92086 0.91275 0.89902 0.93629 0.90168 0.93265 0.90675 0.90795 0.90627 0.90505 0.91095 0.90148 0.75571 0.86229 0.86601 0.88644 0.95351 0.94545 0.94451 0.95411 0.88635 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.02 5.73 -26.73 -0.15 -1.17 16 3 C 0.03 0.32 3.73 -3.82 -0.01 0.31 16 4 N -0.52 -5.05 5.27 -223.35 -1.18 -6.23 16 5 C 0.04 0.33 5.34 -2.30 -0.01 0.32 16 6 C -0.13 -1.04 7.08 -24.59 -0.17 -1.21 16 7 C -0.14 -1.33 6.26 -24.91 -0.16 -1.49 16 8 C 0.07 0.69 3.51 -66.73 -0.23 0.45 16 9 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 10 C 0.10 1.16 4.17 -4.04 -0.02 1.14 16 11 N -1.13 -14.87 5.65 -10.61 -0.06 -14.93 16 12 S 2.59 47.28 4.49 -107.50 -0.48 46.80 16 13 O -0.97 -19.97 15.09 -57.54 -0.87 -20.84 16 14 O -0.96 -20.08 15.70 -57.54 -0.90 -20.99 16 15 C -0.58 -11.20 5.01 37.16 0.19 -11.02 16 16 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 17 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 18 C -0.16 -4.03 7.78 37.15 0.29 -3.74 16 19 C -0.50 -13.10 8.01 -34.44 -0.28 -13.38 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.71 5.15 -17.82 -0.09 1.61 16 22 N -0.88 -24.05 9.35 55.43 0.52 -23.53 16 23 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.49 6.79 -51.93 -0.35 0.13 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.80 6.90 -51.93 -0.36 0.44 16 33 H 0.05 0.47 6.35 -51.93 -0.33 0.14 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.43 7.37 -51.93 -0.38 0.05 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.83 7.78 -51.93 -0.40 0.42 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 41 H 0.08 1.03 6.33 -51.93 -0.33 0.70 16 42 H 0.41 4.56 8.63 -34.47 -0.30 4.26 16 43 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 44 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 45 H 0.09 2.52 6.07 -51.93 -0.31 2.21 16 46 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.03 0.65 5.47 -51.93 -0.28 0.36 16 50 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 51 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -31.08 387.95 -11.25 -42.33 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -9.02 Total: 6.90 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: -0.08 Total: -30.88 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.72 Total: -44.69 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -1.77 Total: -41.83 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.48 Total: 46.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.08 -11.25 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451536071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.089 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds