Wall clock time and date at job start Tue Mar 31 2020 16:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47309 * 2 1 4 4 N 1.46904 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.47840 * 111.00126 * 54.96437 * 4 3 2 6 6 C 1.54912 * 104.79460 * 146.36546 * 5 4 3 7 7 C 1.55143 * 101.65216 * 322.93013 * 6 5 4 8 8 C 1.47442 * 110.99827 * 175.80946 * 4 3 2 9 9 H 1.09006 * 109.89097 * 117.17269 * 8 4 3 10 10 C 1.52997 * 109.89043 * 356.14616 * 8 4 3 11 11 N 1.46504 * 109.47455 * 175.95369 * 10 8 4 12 12 S 1.65597 * 120.00228 * 163.01756 * 11 10 8 13 13 O 1.42102 * 104.27600 * 308.92329 * 12 11 10 14 14 O 1.42102 * 104.27774 * 181.07537 * 12 11 10 15 15 C 1.81399 * 104.45176 * 64.99966 * 12 11 10 16 16 C 1.52999 * 109.46939 * 180.02562 * 15 12 11 17 17 C 1.53000 * 109.47409 * 60.00165 * 16 15 12 18 18 C 1.52988 * 109.47282 * 299.99717 * 16 15 12 19 19 C 1.50705 * 109.46980 * 179.97438 * 16 15 12 20 20 H 1.07999 * 119.99704 * 359.97438 * 19 16 15 21 21 C 1.37870 * 120.00341 * 180.02562 * 19 16 15 22 22 N 1.31521 * 119.99508 * 0.02562 * 21 19 16 23 23 Si 1.86794 * 120.00414 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47176 * 89.99815 * 23 21 19 25 25 H 1.48503 * 109.47198 * 209.99878 * 23 21 19 26 26 H 1.48499 * 109.46938 * 329.99737 * 23 21 19 27 27 H 1.09003 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46962 * 299.99670 * 1 2 3 29 29 H 1.08993 * 109.47297 * 59.99834 * 1 2 3 30 30 H 1.09004 * 109.47173 * 239.99820 * 2 1 3 31 31 H 1.09005 * 109.47565 * 119.99864 * 2 1 3 32 32 H 1.08995 * 109.47381 * 60.00006 * 3 2 1 33 33 H 1.09007 * 109.46740 * 299.99851 * 3 2 1 34 34 H 1.09003 * 110.37128 * 265.19247 * 5 4 3 35 35 H 1.08999 * 110.37488 * 27.42911 * 5 4 3 36 36 H 1.09001 * 110.99078 * 81.01756 * 6 5 4 37 37 H 1.09000 * 110.98847 * 204.83476 * 6 5 4 38 38 H 1.09004 * 110.70271 * 277.27398 * 7 6 5 39 39 H 1.09002 * 110.70382 * 154.03489 * 7 6 5 40 40 H 1.09004 * 109.47363 * 55.95113 * 10 8 4 41 41 H 1.08999 * 109.47156 * 295.95339 * 10 8 4 42 42 H 0.96998 * 119.99325 * 343.01590 * 11 10 8 43 43 H 1.08995 * 109.46988 * 59.99658 * 15 12 11 44 44 H 1.09005 * 109.46572 * 299.99872 * 15 12 11 45 45 H 1.08993 * 109.47700 * 179.97438 * 17 16 15 46 46 H 1.09000 * 109.46816 * 299.99881 * 17 16 15 47 47 H 1.09005 * 109.47541 * 59.99305 * 17 16 15 48 48 H 1.08997 * 109.47693 * 300.00330 * 18 16 15 49 49 H 1.09001 * 109.47155 * 60.00630 * 18 16 15 50 50 H 1.09003 * 109.47570 * 179.97438 * 18 16 15 51 51 H 0.97005 * 119.99788 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0384 0.6503 -1.1311 6 6 5.3442 1.3741 -1.5442 7 6 4.9554 2.8622 -1.3407 8 6 4.0374 2.8153 -0.1012 9 1 4.6077 3.0598 0.7950 10 6 2.8837 3.8059 -0.2701 11 7 3.4102 5.1731 -0.2722 12 16 2.4820 6.4171 -0.8493 13 8 2.0474 5.9673 -2.1253 14 8 3.3122 7.5630 -0.7202 15 6 1.0839 6.5109 0.3028 16 6 0.1420 7.6366 -0.1289 17 6 -0.3779 7.3538 -1.5398 18 6 0.8990 8.9660 -0.1214 19 6 -1.0198 7.7142 0.8278 20 1 -1.0805 7.0287 1.6602 21 6 -2.0058 8.6593 0.6399 22 7 -1.9326 9.4930 -0.3747 23 14 -3.4455 8.7559 1.8261 24 1 -3.1117 9.6856 2.9350 25 1 -4.6463 9.2532 1.1077 26 1 -3.7230 7.4058 2.3786 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 4.2544 -0.3693 -0.8116 35 1 3.3274 0.6458 -1.9572 36 1 6.1699 1.0935 -0.8903 37 1 5.5886 1.1735 -2.5873 38 1 4.4135 3.2409 -2.2074 39 1 5.8397 3.4680 -1.1427 40 1 2.1804 3.6887 0.5544 41 1 2.3733 3.6118 -1.2134 42 1 4.3026 5.3495 0.0645 43 1 1.4543 6.7119 1.3080 44 1 0.5443 5.5638 0.2970 45 1 -1.0493 8.1555 -1.8473 46 1 0.4622 7.2974 -2.2321 47 1 -0.9173 6.4065 -1.5453 48 1 1.2694 9.1676 0.8837 49 1 1.7391 8.9098 -0.8137 50 1 0.2282 9.7681 -0.4294 51 1 -2.6261 10.1583 -0.5068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451536071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:16 Heat of formation + Delta-G solvation = -98.807176 kcal Electronic energy + Delta-G solvation = -28623.379990 eV Core-core repulsion = 24876.656090 eV Total energy + Delta-G solvation = -3746.723899 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.74595 -38.14300 -38.12576 -36.93218 -36.16976 -35.19787 -33.63910 -31.79853 -30.35805 -28.32463 -27.70363 -27.25878 -26.36215 -25.78385 -23.15295 -21.68610 -21.40317 -20.52579 -20.25251 -18.77959 -17.88733 -17.60919 -17.06115 -16.89376 -16.63205 -16.51965 -16.07713 -15.71193 -15.44956 -15.04689 -14.69793 -14.46779 -14.41848 -14.36391 -13.85636 -13.76793 -13.45970 -13.24914 -13.13669 -13.03658 -12.95063 -12.89351 -12.78224 -12.60711 -12.51892 -12.19663 -12.15109 -12.13453 -12.07047 -12.00326 -11.92818 -11.71592 -11.58808 -11.57533 -11.53179 -11.37817 -10.70201 -10.42137 -10.29970 -9.26476 -8.03511 -6.22147 -0.63159 1.43824 1.45769 1.54216 1.85619 2.43891 2.82626 2.96971 3.18808 3.29546 3.56814 3.71181 3.78257 3.98615 4.10579 4.11075 4.15389 4.22136 4.31575 4.40156 4.47803 4.51153 4.58750 4.60686 4.70543 4.73554 4.84978 4.85625 4.86771 4.92508 4.96410 4.98023 5.04622 5.07337 5.08622 5.18702 5.21097 5.34600 5.36727 5.37814 5.43747 5.49773 5.64155 5.96393 5.97283 6.08628 6.10343 6.13052 6.33424 6.82588 7.46287 8.96386 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.003597 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.413901 B = 7781.684562 C = 9259.388089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C 0.030 3.970 4 N -0.522 5.522 5 C 0.036 3.964 6 C -0.125 4.125 7 C -0.145 4.145 8 C 0.071 3.929 9 H 0.105 0.895 10 C 0.093 3.907 11 N -1.108 6.108 12 S 2.615 3.385 13 O -0.992 6.992 14 O -0.992 6.992 15 C -0.586 4.586 16 C 0.069 3.931 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.517 4.517 20 H 0.063 0.937 21 C 0.018 3.982 22 N -0.908 5.908 23 Si 0.954 3.046 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.424 0.576 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.039 0.961 48 H 0.040 0.960 49 H 0.032 0.968 50 H 0.071 0.929 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.798 -19.333 1.380 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.098 4.098 4 N -0.246 5.246 5 C -0.091 4.091 6 C -0.163 4.163 7 C -0.183 4.183 8 C -0.039 4.039 9 H 0.123 0.877 10 C -0.034 4.034 11 N -0.870 5.870 12 S 2.712 3.288 13 O -0.981 6.981 14 O -0.982 6.982 15 C -0.719 4.719 16 C 0.067 3.933 17 C -0.216 4.216 18 C -0.218 4.218 19 C -0.556 4.556 20 H 0.082 0.918 21 C -0.182 4.182 22 N -0.547 5.547 23 Si 0.780 3.220 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.261 0.739 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.050 0.950 50 H 0.090 0.910 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.894 -18.957 0.911 22.398 hybrid contribution -1.289 0.807 0.290 1.548 sum 10.605 -18.150 1.201 21.055 Atomic orbital electron populations 1.21761 0.95345 1.02275 1.01839 1.21519 0.95770 0.95356 1.02733 1.22595 0.87551 0.98404 1.01255 1.63931 1.07904 1.09544 1.43217 1.23175 0.95661 0.98625 0.91626 1.22712 0.97640 0.93507 1.02397 1.22932 0.99993 0.98254 0.97137 1.22654 0.94262 0.87150 0.99785 0.87727 1.22181 0.97969 0.80883 1.02397 1.55267 1.29557 1.19402 1.82781 1.04676 0.75741 0.72500 0.75870 1.93499 1.83487 1.81361 1.39788 1.93511 1.66787 1.50187 1.87684 1.30453 1.16257 1.08937 1.16212 1.17924 0.92599 0.88826 0.93980 1.22194 1.00953 1.01599 0.96898 1.22206 0.98275 1.01703 0.99611 1.21289 1.06028 1.16973 1.11277 0.91841 1.25674 1.00381 0.95273 0.96841 1.69949 1.34792 1.19898 1.30043 0.85619 0.78934 0.78485 0.78969 1.20411 1.21301 1.19082 0.91619 0.92621 0.93265 0.91644 0.90987 0.89981 0.94711 0.89002 0.93750 0.89671 0.89943 0.92456 0.89517 0.89816 0.91334 0.73946 0.84375 0.84701 0.91097 0.94926 0.94143 0.94077 0.94971 0.91048 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.12 -1.75 5.73 30.59 0.18 -1.58 16 3 C 0.03 0.53 3.73 86.30 0.32 0.85 16 4 N -0.52 -9.05 5.27 -860.53 -4.54 -13.59 16 5 C 0.04 0.55 5.34 86.78 0.46 1.01 16 6 C -0.12 -1.70 7.08 31.98 0.23 -1.47 16 7 C -0.14 -2.48 6.26 31.78 0.20 -2.28 16 8 C 0.07 1.27 3.51 45.26 0.16 1.43 16 9 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 10 C 0.09 2.02 4.17 86.38 0.36 2.38 16 11 N -1.11 -27.28 5.65 -187.48 -1.06 -28.34 16 12 S 2.62 92.79 4.49 -56.49 -0.25 92.53 16 13 O -0.99 -40.65 15.09 -127.65 -1.93 -42.58 16 14 O -0.99 -40.53 15.70 -127.65 -2.00 -42.53 16 15 C -0.59 -21.77 5.01 71.98 0.36 -21.40 16 16 C 0.07 3.29 0.52 -52.93 -0.03 3.27 16 17 C -0.16 -7.84 7.77 71.98 0.56 -7.29 16 18 C -0.16 -7.95 7.78 71.98 0.56 -7.39 16 19 C -0.52 -26.68 8.01 25.60 0.21 -26.47 16 20 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 21 C 0.02 0.93 5.15 84.65 0.44 1.37 16 22 N -0.91 -50.20 9.35 21.45 0.20 -50.00 16 23 Si 0.95 41.90 29.54 68.60 2.03 43.92 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.93 6.79 -2.39 -0.02 0.91 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.45 6.90 -2.39 -0.02 1.44 16 33 H 0.03 0.69 6.35 -2.38 -0.02 0.68 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.04 0.71 7.37 -2.39 -0.02 0.69 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.20 7.78 -2.39 -0.02 1.18 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.63 6.44 -2.38 -0.02 1.62 16 41 H 0.07 1.70 6.33 -2.39 -0.02 1.68 16 42 H 0.42 8.47 8.63 -96.75 -0.83 7.63 16 43 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 44 H 0.13 4.43 8.14 -2.39 -0.02 4.41 16 45 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 46 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 47 H 0.04 1.88 8.14 -2.38 -0.02 1.87 16 48 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.03 1.52 5.47 -2.39 -0.01 1.51 16 50 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 51 H 0.26 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -65.75 387.95 -2.77 -68.52 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.07 Total: 31.28 kcal Atomic # 6 Polarization: -63.92 SS G_CDS: 4.71 Total: -59.21 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -5.40 Total: -91.93 kcal Atomic # 8 Polarization: -81.18 SS G_CDS: -3.93 Total: -85.11 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 92.79 SS G_CDS: -0.25 Total: 92.53 kcal Total: -65.75 -2.77 -68.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451536071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.290 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds