Wall clock time and date at job start Tue Mar 31 2020 16:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47170 * 2 1 4 4 N 1.46905 * 109.46942 * 185.44096 * 3 2 1 5 5 C 1.46893 * 110.99968 * 168.27174 * 4 3 2 6 6 C 1.53000 * 109.47137 * 294.82931 * 5 4 3 7 7 C 1.46900 * 110.99570 * 292.22628 * 4 3 2 8 8 C 1.53009 * 109.46710 * 170.00226 * 7 4 3 9 9 H 1.08999 * 109.47242 * 64.99692 * 8 7 4 10 10 C 1.53002 * 109.47008 * 184.99911 * 8 7 4 11 11 N 1.46501 * 109.46748 * 304.99904 * 8 7 4 12 12 S 1.65595 * 120.00124 * 145.00244 * 11 8 7 13 13 O 1.42098 * 104.27662 * 308.92806 * 12 11 8 14 14 O 1.42094 * 104.28296 * 181.06629 * 12 11 8 15 15 C 1.81400 * 104.44906 * 64.99487 * 12 11 8 16 16 C 1.53002 * 109.47081 * 184.64547 * 15 12 11 17 17 C 1.50695 * 115.55186 * 294.24979 * 16 15 12 18 18 H 1.08005 * 120.00101 * 94.94764 * 17 16 15 19 19 C 1.37874 * 119.99991 * 274.67025 * 17 16 15 20 20 N 1.31507 * 120.00271 * 355.51342 * 19 17 16 21 21 Si 1.86801 * 119.99922 * 175.51127 * 19 17 16 22 22 H 1.48497 * 109.47451 * 60.00329 * 21 19 17 23 23 H 1.48502 * 109.47379 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47155 * 300.00304 * 21 19 17 25 25 C 1.53007 * 117.49813 * 79.92464 * 16 15 12 26 26 C 1.53001 * 117.49867 * 148.58070 * 16 15 12 27 27 H 1.08999 * 109.47431 * 300.00678 * 1 2 3 28 28 H 1.09003 * 109.46742 * 60.00051 * 1 2 3 29 29 H 1.08994 * 109.47456 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47104 * 239.99392 * 2 1 3 31 31 H 1.09002 * 109.46296 * 119.99663 * 2 1 3 32 32 H 1.08996 * 109.47200 * 65.44116 * 3 2 1 33 33 H 1.08999 * 109.47068 * 305.44113 * 3 2 1 34 34 H 1.09001 * 109.46995 * 54.82273 * 5 4 3 35 35 H 1.08992 * 109.47206 * 174.82814 * 5 4 3 36 36 H 1.09003 * 109.47695 * 186.49223 * 6 5 4 37 37 H 1.09001 * 109.47233 * 306.49275 * 6 5 4 38 38 H 1.09001 * 109.47373 * 66.49176 * 6 5 4 39 39 H 1.08993 * 109.47325 * 50.00109 * 7 4 3 40 40 H 1.08995 * 109.46959 * 289.99234 * 7 4 3 41 41 H 1.08999 * 109.47298 * 59.99815 * 10 8 7 42 42 H 1.08998 * 109.46848 * 180.02562 * 10 8 7 43 43 H 1.08995 * 109.46581 * 299.99454 * 10 8 7 44 44 H 0.97001 * 119.99925 * 324.99842 * 11 8 7 45 45 H 1.08999 * 109.47330 * 64.64784 * 15 12 11 46 46 H 1.08994 * 109.47518 * 304.64593 * 15 12 11 47 47 H 0.97004 * 120.00411 * 185.00285 * 20 19 17 48 48 H 1.09005 * 117.49565 * 215.00329 * 25 16 15 49 49 H 1.08996 * 117.49739 * 0.02562 * 25 16 15 50 50 H 1.09003 * 117.50026 * 359.97438 * 26 16 15 51 51 H 1.08999 * 117.50482 * 144.97558 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5032 1.4445 -0.1313 5 6 4.0045 2.7961 -0.4135 6 6 3.4968 3.2530 -1.7825 7 6 4.1402 0.8866 1.0691 8 6 5.6317 0.6734 0.8025 9 1 6.1137 1.6378 0.6421 10 6 6.2706 -0.0221 2.0064 11 7 5.8002 -0.1611 -0.3897 12 16 7.0747 0.1047 -1.4131 13 8 7.0169 1.4971 -1.6904 14 8 6.9013 -0.8558 -2.4458 15 6 8.5416 -0.2861 -0.4202 16 6 9.8026 0.0333 -1.2257 17 6 10.0232 -0.8151 -2.4514 18 1 9.6887 -0.4660 -3.4172 19 6 10.6570 -2.0345 -2.3409 20 7 11.1475 -2.4181 -1.1825 21 14 10.8191 -3.1419 -3.8365 22 1 11.5835 -2.4350 -4.8954 23 1 11.5346 -4.3863 -3.4559 24 1 9.4675 -3.4850 -4.3472 25 6 10.2492 1.4954 -1.2887 26 6 11.0401 0.4887 -0.4497 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.7585 1.9274 0.9347 33 1 1.5993 1.9837 -0.8372 34 1 3.6482 3.4833 0.3540 35 1 5.0944 2.7864 -0.4149 36 1 3.9600 4.2047 -2.0429 37 1 3.7544 2.5060 -2.5334 38 1 2.4140 3.3737 -1.7468 39 1 3.6753 -0.0676 1.3169 40 1 4.0153 1.5788 1.9016 41 1 5.7886 -0.9865 2.1668 42 1 7.3332 -0.1735 1.8166 43 1 6.1452 0.5989 2.8933 44 1 5.1653 -0.8694 -0.5796 45 1 8.5341 -1.3450 -0.1619 46 1 8.5325 0.3104 0.4920 47 1 11.6563 -3.2415 -1.1200 48 1 10.7024 1.8436 -2.2169 49 1 9.6449 2.2296 -0.7560 50 1 10.9558 0.5611 0.6346 51 1 12.0138 0.1743 -0.8255 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451568280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:50 Heat of formation + Delta-G solvation = -58.623761 kcal Electronic energy + Delta-G solvation = -28816.940175 eV Core-core repulsion = 25071.958759 eV Total energy + Delta-G solvation = -3744.981416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.82540 -36.71774 -36.18150 -35.67450 -34.95837 -33.50630 -31.99012 -30.68398 -29.55670 -28.18335 -26.78069 -25.41873 -24.62198 -22.11187 -21.52094 -21.14052 -20.21007 -19.68071 -18.61245 -17.01750 -16.47102 -16.20271 -15.71140 -15.21527 -14.98094 -14.92852 -14.66321 -14.53736 -14.24661 -13.75311 -13.53578 -13.39464 -13.22323 -13.04458 -12.59569 -12.32502 -12.15607 -11.96058 -11.80772 -11.75858 -11.61797 -11.51955 -11.36250 -11.17086 -11.10541 -11.05340 -11.00908 -10.87138 -10.83692 -10.56801 -10.53535 -10.40295 -10.37674 -10.03486 -9.62654 -9.09223 -9.00017 -8.48829 -8.32161 -8.03235 -6.08607 -4.20467 1.19223 3.35617 3.37843 3.47442 3.52731 3.82079 4.41450 4.60065 4.70355 4.75929 4.87559 5.02378 5.05924 5.09559 5.18667 5.21198 5.24647 5.27335 5.32136 5.36507 5.43533 5.47159 5.53884 5.61567 5.64169 5.65674 5.70283 5.82828 5.87819 5.88819 5.97321 6.02009 6.12361 6.17720 6.21510 6.30628 6.34729 6.37888 6.45975 6.66649 6.76714 7.04344 7.05918 7.09083 7.27985 7.49507 7.50475 7.84210 8.24972 8.84983 9.50654 10.97902 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.003596 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.833332 B = 7784.120044 C = 8124.027356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.052 3.948 4 N -0.531 5.531 5 C 0.044 3.956 6 C -0.146 4.146 7 C 0.051 3.949 8 C 0.150 3.850 9 H 0.087 0.913 10 C -0.181 4.181 11 N -1.111 6.111 12 S 2.611 3.389 13 O -0.972 6.972 14 O -0.954 6.954 15 C -0.560 4.560 16 C 0.041 3.959 17 C -0.513 4.513 18 H 0.067 0.933 19 C 0.080 3.920 20 N -0.876 5.876 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.267 1.267 25 C -0.210 4.210 26 C -0.135 4.135 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.412 0.588 45 H 0.129 0.871 46 H 0.098 0.902 47 H 0.262 0.738 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 6.653 8.478 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.076 4.076 4 N -0.255 5.255 5 C -0.083 4.083 6 C -0.203 4.203 7 C -0.079 4.079 8 C 0.041 3.959 9 H 0.105 0.895 10 C -0.240 4.240 11 N -0.867 5.867 12 S 2.707 3.293 13 O -0.962 6.962 14 O -0.944 6.944 15 C -0.692 4.692 16 C 0.039 3.961 17 C -0.550 4.550 18 H 0.085 0.915 19 C -0.125 4.125 20 N -0.511 5.511 21 Si 0.715 3.285 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.192 1.192 25 C -0.247 4.247 26 C -0.174 4.174 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.245 0.755 45 H 0.147 0.853 46 H 0.116 0.884 47 H 0.072 0.928 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.291 6.618 7.314 19.045 hybrid contribution 0.005 -0.720 0.696 1.001 sum -16.286 5.899 8.010 19.084 Atomic orbital electron populations 1.21731 0.95871 1.01657 1.01540 1.21567 0.95158 0.96622 1.02800 1.22209 0.87970 0.97172 1.00247 1.61958 1.04649 1.22433 1.36436 1.22201 1.01841 0.87675 0.96592 1.21760 0.99805 1.01443 0.97326 1.22415 0.94234 1.00251 0.90958 1.20728 0.95702 0.94135 0.85337 0.89487 1.22486 1.02267 1.01518 0.97757 1.55728 1.44651 1.46789 1.39554 1.04995 0.75073 0.74461 0.74784 1.93475 1.86259 1.33162 1.83279 1.93544 1.84782 1.62886 1.53223 1.30162 1.16951 1.10894 1.11178 1.18267 0.89805 0.91720 0.96349 1.20497 1.40642 1.01829 0.92040 0.91497 1.24946 0.94383 0.97130 0.95999 1.69992 1.33955 1.23393 1.23783 0.86686 0.78948 0.79811 0.83016 1.19959 1.21181 1.19189 1.23195 1.06119 0.93141 1.02239 1.22506 0.97790 1.02034 0.95074 0.93105 0.92736 0.92624 0.90776 0.92158 0.95363 0.90476 0.95562 0.89098 0.92279 0.91423 0.93475 0.89936 0.94070 0.91671 0.91166 0.91706 0.75483 0.85294 0.88352 0.92789 0.89655 0.90817 0.91802 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.09 5.79 -26.73 -0.15 -1.24 16 3 C 0.05 0.50 4.83 -3.82 -0.02 0.48 16 4 N -0.53 -6.10 4.22 -234.63 -0.99 -7.09 16 5 C 0.04 0.54 5.54 -3.83 -0.02 0.52 16 6 C -0.15 -1.73 9.68 37.16 0.36 -1.37 16 7 C 0.05 0.52 4.44 -3.82 -0.02 0.51 16 8 C 0.15 1.82 2.61 -67.92 -0.18 1.64 16 9 H 0.09 1.13 5.95 -51.93 -0.31 0.82 16 10 C -0.18 -1.91 9.48 37.16 0.35 -1.56 16 11 N -1.11 -16.50 5.08 -4.89 -0.02 -16.53 16 12 S 2.61 52.56 5.20 -107.50 -0.56 52.00 16 13 O -0.97 -20.74 17.07 -57.54 -0.98 -21.72 16 14 O -0.95 -23.19 17.68 -57.54 -1.02 -24.21 16 15 C -0.56 -11.62 5.25 37.16 0.19 -11.43 16 16 C 0.04 1.00 1.42 -155.66 -0.22 0.78 16 17 C -0.51 -14.21 8.16 -34.44 -0.28 -14.50 16 18 H 0.07 1.90 7.82 -52.48 -0.41 1.49 16 19 C 0.08 2.21 5.43 -17.82 -0.10 2.11 16 20 N -0.88 -24.28 12.64 55.43 0.70 -23.58 16 21 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.21 -4.63 9.96 -26.69 -0.27 -4.90 16 26 C -0.13 -3.10 9.12 -26.69 -0.24 -3.34 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.51 6.66 -51.93 -0.35 0.16 16 32 H 0.03 0.25 8.10 -51.93 -0.42 -0.17 16 33 H 0.08 0.74 6.12 -51.93 -0.32 0.42 16 34 H 0.03 0.28 8.13 -51.93 -0.42 -0.14 16 35 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.47 6.61 -51.93 -0.34 0.13 16 39 H 0.08 0.76 6.27 -51.93 -0.33 0.44 16 40 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.83 5.63 -51.93 -0.29 0.54 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.41 5.62 8.80 -34.47 -0.30 5.32 16 45 H 0.13 2.79 8.14 -51.92 -0.42 2.36 16 46 H 0.10 1.71 6.40 -51.93 -0.33 1.38 16 47 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 48 H 0.08 1.88 8.14 -51.93 -0.42 1.45 16 49 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 50 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 51 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 409.02 15.07 6.16 6.16 Total: -1.00 -32.24 409.02 -11.13 -43.37 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -9.18 Total: 7.95 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: -0.22 Total: -33.03 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.32 Total: -47.20 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -2.00 Total: -45.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 52.56 SS G_CDS: -0.56 Total: 52.00 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.24 -11.13 -43.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451568280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.249 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds