Wall clock time and date at job start Tue Mar 31 2020 16:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47170 * 2 1 4 4 N 1.46905 * 109.46942 * 185.44096 * 3 2 1 5 5 C 1.46893 * 110.99968 * 168.27174 * 4 3 2 6 6 C 1.53000 * 109.47137 * 294.82931 * 5 4 3 7 7 C 1.46900 * 110.99570 * 292.22628 * 4 3 2 8 8 C 1.53009 * 109.46710 * 170.00226 * 7 4 3 9 9 H 1.08999 * 109.47242 * 64.99692 * 8 7 4 10 10 C 1.53002 * 109.47008 * 184.99911 * 8 7 4 11 11 N 1.46501 * 109.46748 * 304.99904 * 8 7 4 12 12 S 1.65595 * 120.00124 * 145.00244 * 11 8 7 13 13 O 1.42098 * 104.27662 * 308.92806 * 12 11 8 14 14 O 1.42094 * 104.28296 * 181.06629 * 12 11 8 15 15 C 1.81400 * 104.44906 * 64.99487 * 12 11 8 16 16 C 1.53002 * 109.47081 * 184.64547 * 15 12 11 17 17 C 1.50695 * 115.55186 * 294.24979 * 16 15 12 18 18 H 1.08005 * 120.00101 * 94.94764 * 17 16 15 19 19 C 1.37874 * 119.99991 * 274.67025 * 17 16 15 20 20 N 1.31507 * 120.00271 * 355.51342 * 19 17 16 21 21 Si 1.86801 * 119.99922 * 175.51127 * 19 17 16 22 22 H 1.48497 * 109.47451 * 60.00329 * 21 19 17 23 23 H 1.48502 * 109.47379 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47155 * 300.00304 * 21 19 17 25 25 C 1.53007 * 117.49813 * 79.92464 * 16 15 12 26 26 C 1.53001 * 117.49867 * 148.58070 * 16 15 12 27 27 H 1.08999 * 109.47431 * 300.00678 * 1 2 3 28 28 H 1.09003 * 109.46742 * 60.00051 * 1 2 3 29 29 H 1.08994 * 109.47456 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47104 * 239.99392 * 2 1 3 31 31 H 1.09002 * 109.46296 * 119.99663 * 2 1 3 32 32 H 1.08996 * 109.47200 * 65.44116 * 3 2 1 33 33 H 1.08999 * 109.47068 * 305.44113 * 3 2 1 34 34 H 1.09001 * 109.46995 * 54.82273 * 5 4 3 35 35 H 1.08992 * 109.47206 * 174.82814 * 5 4 3 36 36 H 1.09003 * 109.47695 * 186.49223 * 6 5 4 37 37 H 1.09001 * 109.47233 * 306.49275 * 6 5 4 38 38 H 1.09001 * 109.47373 * 66.49176 * 6 5 4 39 39 H 1.08993 * 109.47325 * 50.00109 * 7 4 3 40 40 H 1.08995 * 109.46959 * 289.99234 * 7 4 3 41 41 H 1.08999 * 109.47298 * 59.99815 * 10 8 7 42 42 H 1.08998 * 109.46848 * 180.02562 * 10 8 7 43 43 H 1.08995 * 109.46581 * 299.99454 * 10 8 7 44 44 H 0.97001 * 119.99925 * 324.99842 * 11 8 7 45 45 H 1.08999 * 109.47330 * 64.64784 * 15 12 11 46 46 H 1.08994 * 109.47518 * 304.64593 * 15 12 11 47 47 H 0.97004 * 120.00411 * 185.00285 * 20 19 17 48 48 H 1.09005 * 117.49565 * 215.00329 * 25 16 15 49 49 H 1.08996 * 117.49739 * 0.02562 * 25 16 15 50 50 H 1.09003 * 117.50026 * 359.97438 * 26 16 15 51 51 H 1.08999 * 117.50482 * 144.97558 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5032 1.4445 -0.1313 5 6 4.0045 2.7961 -0.4135 6 6 3.4968 3.2530 -1.7825 7 6 4.1402 0.8866 1.0691 8 6 5.6317 0.6734 0.8025 9 1 6.1137 1.6378 0.6421 10 6 6.2706 -0.0221 2.0064 11 7 5.8002 -0.1611 -0.3897 12 16 7.0747 0.1047 -1.4131 13 8 7.0169 1.4971 -1.6904 14 8 6.9013 -0.8558 -2.4458 15 6 8.5416 -0.2861 -0.4202 16 6 9.8026 0.0333 -1.2257 17 6 10.0232 -0.8151 -2.4514 18 1 9.6887 -0.4660 -3.4172 19 6 10.6570 -2.0345 -2.3409 20 7 11.1475 -2.4181 -1.1825 21 14 10.8191 -3.1419 -3.8365 22 1 11.5835 -2.4350 -4.8954 23 1 11.5346 -4.3863 -3.4559 24 1 9.4675 -3.4850 -4.3472 25 6 10.2492 1.4954 -1.2887 26 6 11.0401 0.4887 -0.4497 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.7585 1.9274 0.9347 33 1 1.5993 1.9837 -0.8372 34 1 3.6482 3.4833 0.3540 35 1 5.0944 2.7864 -0.4149 36 1 3.9600 4.2047 -2.0429 37 1 3.7544 2.5060 -2.5334 38 1 2.4140 3.3737 -1.7468 39 1 3.6753 -0.0676 1.3169 40 1 4.0153 1.5788 1.9016 41 1 5.7886 -0.9865 2.1668 42 1 7.3332 -0.1735 1.8166 43 1 6.1452 0.5989 2.8933 44 1 5.1653 -0.8694 -0.5796 45 1 8.5341 -1.3450 -0.1619 46 1 8.5325 0.3104 0.4920 47 1 11.6563 -3.2415 -1.1200 48 1 10.7024 1.8436 -2.2169 49 1 9.6449 2.2296 -0.7560 50 1 10.9558 0.5611 0.6346 51 1 12.0138 0.1743 -0.8255 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451568280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:49 Heat of formation + Delta-G solvation = -80.717326 kcal Electronic energy + Delta-G solvation = -28817.898224 eV Core-core repulsion = 25071.958759 eV Total energy + Delta-G solvation = -3745.939465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.69889 -38.55146 -37.84008 -36.76270 -36.63411 -34.25289 -34.06805 -31.67599 -30.55368 -29.82049 -27.65246 -27.36218 -25.45184 -23.01390 -22.92987 -22.32624 -21.49086 -21.08316 -20.18381 -18.50718 -18.31079 -17.38124 -16.86155 -16.63445 -16.44770 -16.25686 -15.90225 -15.63038 -15.47486 -15.33003 -14.97896 -14.51107 -14.08770 -13.97033 -13.89196 -13.64065 -13.38660 -13.09592 -13.02279 -12.97882 -12.86949 -12.85087 -12.82900 -12.80602 -12.51875 -12.43295 -12.38665 -12.21910 -12.16805 -12.00383 -11.84897 -11.79386 -11.48955 -11.29002 -11.25934 -10.96342 -10.51285 -10.34443 -9.82288 -9.12866 -8.17758 -6.33593 -0.40679 1.37140 1.41167 1.49263 2.14484 2.39731 2.97298 3.06068 3.09581 3.39814 3.54387 3.78189 3.99746 4.02027 4.14203 4.19982 4.26280 4.30127 4.36484 4.44376 4.49442 4.53444 4.58162 4.63245 4.66893 4.70466 4.71400 4.78240 4.84615 4.89952 4.95818 4.99988 5.00891 5.04376 5.20096 5.24416 5.25819 5.33358 5.35898 5.40237 5.43020 5.47945 5.49260 5.64802 5.72326 6.20576 6.23917 6.28997 6.36513 6.72487 7.38469 8.87941 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.003596 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.833332 B = 7784.120044 C = 8124.027356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.054 3.946 4 N -0.550 5.550 5 C 0.044 3.956 6 C -0.145 4.145 7 C 0.054 3.946 8 C 0.142 3.858 9 H 0.080 0.920 10 C -0.180 4.180 11 N -1.096 6.096 12 S 2.626 3.374 13 O -0.987 6.987 14 O -1.004 7.004 15 C -0.555 4.555 16 C 0.009 3.991 17 C -0.534 4.534 18 H 0.045 0.955 19 C 0.042 3.958 20 N -0.891 5.891 21 Si 0.931 3.069 22 H -0.268 1.268 23 H -0.271 1.271 24 H -0.278 1.278 25 C -0.197 4.197 26 C -0.131 4.131 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.419 0.581 45 H 0.118 0.882 46 H 0.133 0.867 47 H 0.265 0.735 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.087 0.913 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.948 7.177 10.580 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.274 5.274 5 C -0.084 4.084 6 C -0.202 4.202 7 C -0.075 4.075 8 C 0.034 3.966 9 H 0.098 0.902 10 C -0.239 4.239 11 N -0.856 5.856 12 S 2.722 3.278 13 O -0.977 6.977 14 O -0.994 6.994 15 C -0.687 4.687 16 C 0.007 3.993 17 C -0.571 4.571 18 H 0.064 0.936 19 C -0.161 4.161 20 N -0.527 5.527 21 Si 0.756 3.244 22 H -0.193 1.193 23 H -0.196 1.196 24 H -0.203 1.203 25 C -0.234 4.234 26 C -0.170 4.170 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.254 0.746 45 H 0.136 0.864 46 H 0.151 0.849 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.118 0.882 50 H 0.105 0.895 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.755 7.143 9.416 21.329 hybrid contribution 0.405 -0.823 0.071 0.920 sum -17.350 6.320 9.488 20.760 Atomic orbital electron populations 1.21700 0.94744 1.02047 1.01971 1.21540 0.96121 0.96048 1.02205 1.22222 0.86705 0.97662 1.00744 1.61932 1.05899 1.22153 1.37462 1.22140 1.00523 0.88648 0.97053 1.21748 1.01119 1.00678 0.96695 1.22431 0.92559 1.01413 0.91123 1.21045 0.97546 0.93466 0.84532 0.90202 1.22478 1.01146 1.02465 0.97793 1.55264 1.42868 1.47426 1.40041 1.04245 0.75510 0.73446 0.74623 1.93449 1.86655 1.33747 1.83845 1.93473 1.85668 1.64170 1.56093 1.30044 1.15666 1.10806 1.12153 1.18396 0.91816 0.92798 0.96316 1.20696 1.40810 1.02894 0.92695 0.93641 1.25489 0.94414 0.98053 0.98134 1.70033 1.34344 1.23746 1.24617 0.86030 0.78415 0.79079 0.80897 1.19323 1.19598 1.20328 1.23233 1.05500 0.92643 1.02072 1.22445 0.96241 1.02056 0.96295 0.92144 0.92829 0.92293 0.92577 0.91520 0.94084 0.90753 0.93738 0.91362 0.92014 0.94106 0.91604 0.88588 0.91937 0.90655 0.92565 0.89059 0.74571 0.86393 0.84876 0.92580 0.90284 0.88242 0.89455 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.90 5.79 30.60 0.18 -1.72 16 3 C 0.05 0.91 4.83 86.30 0.42 1.33 16 4 N -0.55 -11.62 4.22 -896.25 -3.79 -15.41 16 5 C 0.04 1.00 5.54 86.30 0.48 1.48 16 6 C -0.14 -3.34 9.68 71.98 0.70 -2.64 16 7 C 0.05 0.96 4.44 86.31 0.38 1.34 16 8 C 0.14 3.14 2.61 44.99 0.12 3.25 16 9 H 0.08 1.92 5.95 -2.39 -0.01 1.91 16 10 C -0.18 -3.25 9.48 71.98 0.68 -2.57 16 11 N -1.10 -31.58 5.08 -169.37 -0.86 -32.44 16 12 S 2.63 106.19 5.20 -56.49 -0.29 105.89 16 13 O -0.99 -42.23 17.07 -127.65 -2.18 -44.41 16 14 O -1.00 -50.22 17.68 -127.65 -2.26 -52.47 16 15 C -0.55 -22.74 5.25 71.98 0.38 -22.36 16 16 C 0.01 0.43 1.42 -52.93 -0.08 0.36 16 17 C -0.53 -30.22 8.16 25.60 0.21 -30.01 16 18 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 19 C 0.04 2.34 5.43 84.66 0.46 2.80 16 20 N -0.89 -49.64 12.64 21.44 0.27 -49.37 16 21 Si 0.93 44.93 29.54 68.60 2.03 46.96 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 25 C -0.20 -8.57 9.96 30.62 0.30 -8.27 16 26 C -0.13 -5.95 9.12 30.62 0.28 -5.67 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 0.95 6.66 -2.39 -0.02 0.93 16 32 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 33 H 0.07 1.28 6.12 -2.39 -0.01 1.27 16 34 H 0.04 0.84 8.13 -2.39 -0.02 0.82 16 35 H 0.07 1.86 5.88 -2.39 -0.01 1.85 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.23 6.61 -2.39 -0.02 1.22 16 39 H 0.10 1.46 6.27 -2.39 -0.01 1.44 16 40 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.18 5.63 -2.39 -0.01 1.17 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.42 11.12 8.80 -96.75 -0.85 10.27 16 45 H 0.12 5.10 8.14 -2.39 -0.02 5.08 16 46 H 0.13 4.38 6.40 -2.39 -0.02 4.36 16 47 H 0.27 14.05 8.32 -92.71 -0.77 13.28 16 48 H 0.08 3.48 8.14 -2.38 -0.02 3.46 16 49 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 50 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 51 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -70.35 409.02 -1.81 -72.16 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.05 Total: 32.92 kcal Atomic # 6 Polarization: -69.05 SS G_CDS: 5.22 Total: -63.83 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -4.38 Total: -97.22 kcal Atomic # 8 Polarization: -92.44 SS G_CDS: -4.44 Total: -96.88 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 106.19 SS G_CDS: -0.29 Total: 105.89 kcal Total: -70.35 -1.81 -72.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451568280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.557 kcal (2) G-P(sol) polarization free energy of solvation -70.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds