Wall clock time and date at job start Tue Mar 31 2020 16:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47509 * 2 1 4 4 N 1.46901 * 109.46846 * 120.00034 * 2 1 3 5 5 C 1.48569 * 110.99968 * 59.87394 * 4 2 1 6 6 C 1.54374 * 104.69724 * 159.09849 * 5 4 2 7 7 C 1.54261 * 105.06407 * 336.08687 * 6 5 4 8 8 H 1.08997 * 110.32458 * 118.99731 * 7 6 5 9 9 N 1.46504 * 110.32380 * 241.10506 * 7 6 5 10 10 C 1.46503 * 119.99806 * 58.54688 * 9 7 6 11 11 S 1.65595 * 120.00112 * 238.54592 * 9 7 6 12 12 O 1.42098 * 104.27605 * 206.07323 * 11 9 7 13 13 O 1.42109 * 104.27513 * 333.92703 * 11 9 7 14 14 C 1.81394 * 104.45093 * 89.99873 * 11 9 7 15 15 C 1.52994 * 109.47118 * 180.02562 * 14 11 9 16 16 C 1.52998 * 109.47422 * 299.99923 * 15 14 11 17 17 C 1.53007 * 109.47474 * 60.00211 * 15 14 11 18 18 C 1.50703 * 109.47238 * 180.02562 * 15 14 11 19 19 H 1.07998 * 119.99945 * 357.69650 * 18 15 14 20 20 C 1.37879 * 120.00064 * 177.69360 * 18 15 14 21 21 N 1.31512 * 120.00070 * 6.58363 * 20 18 15 22 22 Si 1.86800 * 120.00171 * 186.57917 * 20 18 15 23 23 H 1.48497 * 109.46763 * 84.99593 * 22 20 18 24 24 H 1.48494 * 109.47354 * 204.99910 * 22 20 18 25 25 H 1.48502 * 109.46899 * 325.00086 * 22 20 18 26 26 C 1.48854 * 111.13165 * 175.19004 * 4 2 1 27 27 H 1.09003 * 109.46710 * 300.00250 * 1 2 3 28 28 H 1.09001 * 109.46815 * 59.99740 * 1 2 3 29 29 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46710 * 239.99750 * 2 1 3 31 31 H 1.08998 * 109.46913 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.46997 * 299.99865 * 3 2 1 33 33 H 1.09004 * 109.46603 * 60.00034 * 3 2 1 34 34 H 1.09001 * 110.41138 * 40.25855 * 5 4 2 35 35 H 1.09003 * 110.41037 * 277.93706 * 5 4 2 36 36 H 1.08997 * 110.32658 * 94.98423 * 6 5 4 37 37 H 1.09000 * 110.32522 * 217.19022 * 6 5 4 38 38 H 1.08996 * 109.47209 * 89.99832 * 10 9 7 39 39 H 1.08999 * 109.46876 * 210.00032 * 10 9 7 40 40 H 1.09001 * 109.46844 * 329.99633 * 10 9 7 41 41 H 1.09000 * 109.47475 * 300.00312 * 14 11 9 42 42 H 1.09002 * 109.47235 * 59.99960 * 14 11 9 43 43 H 1.08999 * 109.46855 * 66.66838 * 16 15 14 44 44 H 1.08997 * 109.47852 * 186.66736 * 16 15 14 45 45 H 1.09001 * 109.47088 * 306.67063 * 16 15 14 46 46 H 1.09000 * 109.46987 * 59.99494 * 17 15 14 47 47 H 1.08997 * 109.47141 * 179.97438 * 17 15 14 48 48 H 1.09002 * 109.46731 * 300.00043 * 17 15 14 49 49 H 0.97002 * 120.00127 * 179.97438 * 21 20 18 50 50 H 1.09001 * 110.39058 * 82.22154 * 26 4 2 51 51 H 1.08997 * 110.39672 * 319.79959 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5407 -2.0984 1.2353 6 6 2.5195 -2.8215 2.1852 7 6 3.8104 -1.9778 2.1489 8 1 4.0395 -1.5935 3.1428 9 7 4.9281 -2.7791 1.6439 10 6 4.8507 -3.3878 0.3136 11 16 6.2788 -2.9968 2.5768 12 8 7.3188 -3.2333 1.6378 13 8 6.3045 -1.8585 3.4272 14 6 5.9311 -4.4983 3.5334 15 6 7.1194 -4.8081 4.4459 16 6 8.3728 -5.0241 3.5956 17 6 7.3476 -3.6357 5.4022 18 6 6.8308 -6.0559 5.2402 19 1 5.8788 -6.5550 5.1350 20 6 7.7822 -6.5605 6.1013 21 7 8.8879 -5.8856 6.3280 22 14 7.5005 -8.2026 6.9459 23 1 7.9356 -9.3022 6.0478 24 1 8.2852 -8.2524 8.2056 25 1 6.0566 -8.3586 7.2557 26 6 3.5029 -0.8158 1.1801 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9562 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.5818 -2.5395 0.2393 35 1 0.5253 -2.1442 1.6289 36 1 2.1141 -2.8500 3.1965 37 1 2.7175 -3.8319 1.8273 38 1 5.2509 -2.6952 -0.4267 39 1 5.4329 -4.3092 0.3013 40 1 3.8107 -3.6120 0.0766 41 1 5.0384 -4.3444 4.1396 42 1 5.7681 -5.3335 2.8522 43 1 8.6500 -4.0871 3.1126 44 1 9.1908 -5.3602 4.2328 45 1 8.1707 -5.7788 2.8355 46 1 6.4546 -3.4819 6.0080 47 1 8.1938 -3.8567 6.0526 48 1 7.5565 -2.7335 4.8274 49 1 9.5570 -6.2403 6.9341 50 1 3.9652 0.1060 1.5333 51 1 3.8510 -1.0561 0.1755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452107879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:57 Heat of formation + Delta-G solvation = -65.698136 kcal Electronic energy + Delta-G solvation = -28890.502642 eV Core-core repulsion = 25145.214459 eV Total energy + Delta-G solvation = -3745.288184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.72855 -36.60274 -36.36773 -36.22526 -35.27583 -33.27523 -31.67839 -29.48486 -28.86976 -27.16765 -26.76006 -25.72894 -25.62060 -25.22764 -22.47892 -20.62015 -20.28907 -19.38432 -18.44691 -17.50978 -16.73194 -16.12444 -15.88570 -15.44800 -15.12785 -14.86272 -14.68217 -14.34458 -14.07728 -13.75322 -13.26580 -13.07827 -13.02081 -12.85402 -12.52485 -12.50456 -12.44034 -12.34946 -12.16575 -12.00503 -11.82402 -11.47116 -11.40259 -11.33204 -11.17577 -11.07601 -11.02099 -10.98017 -10.90588 -10.78000 -10.66561 -10.38210 -10.31520 -10.09351 -9.66992 -9.58085 -8.96437 -8.70223 -8.64115 -8.38812 -6.04861 -4.16449 0.81245 3.02991 3.25438 3.32519 3.33971 3.75299 4.31606 4.37762 4.41128 4.50603 4.62138 4.70059 4.84842 4.94400 4.97489 5.06661 5.13325 5.19766 5.27660 5.38582 5.40591 5.46099 5.54848 5.57137 5.60369 5.64668 5.66367 5.69911 5.74625 5.79283 5.82907 5.91087 5.95277 6.05388 6.20267 6.37411 6.50303 6.67997 6.77420 6.80033 6.84569 6.90253 7.03582 7.30322 7.47786 7.66758 7.96671 8.09102 8.32756 8.81907 9.48725 10.96255 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.003089 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.951474 B = 9062.145290 C = 9533.739675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 C -0.145 4.145 4 N -0.505 5.505 5 C 0.035 3.965 6 C -0.142 4.142 7 C 0.144 3.856 8 H 0.114 0.886 9 N -1.006 6.006 10 C 0.095 3.905 11 S 2.591 3.409 12 O -0.961 6.961 13 O -0.960 6.960 14 C -0.581 4.581 15 C 0.082 3.918 16 C -0.161 4.161 17 C -0.164 4.164 18 C -0.503 4.503 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.882 5.882 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.026 3.974 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.026 0.974 44 H 0.094 0.906 45 H 0.034 0.966 46 H 0.036 0.964 47 H 0.097 0.903 48 H 0.026 0.974 49 H 0.263 0.737 50 H 0.088 0.912 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.962 8.546 -12.802 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 C -0.203 4.203 4 N -0.230 5.230 5 C -0.093 4.093 6 C -0.181 4.181 7 C 0.037 3.963 8 H 0.132 0.868 9 N -0.842 5.842 10 C -0.051 4.051 11 S 2.690 3.310 12 O -0.952 6.952 13 O -0.950 6.950 14 C -0.715 4.715 15 C 0.080 3.920 16 C -0.219 4.219 17 C -0.222 4.222 18 C -0.542 4.542 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.104 4.104 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.045 0.955 44 H 0.113 0.887 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.116 0.884 48 H 0.045 0.955 49 H 0.073 0.927 50 H 0.107 0.893 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.232 9.457 -12.307 21.058 hybrid contribution -0.362 -1.954 -0.210 1.998 sum -14.594 7.504 -12.517 20.639 Atomic orbital electron populations 1.21849 0.94190 1.01960 1.02205 1.21807 0.95835 0.95596 0.91066 1.21834 1.01253 0.95059 1.02126 1.65543 1.06360 1.13890 1.37191 1.23084 0.99506 0.88384 0.98349 1.22811 0.94843 0.99468 1.01025 1.21572 0.85877 0.90036 0.98811 0.86772 1.57885 1.34892 1.63867 1.27526 1.21347 1.02206 0.97932 0.83619 1.05821 0.72827 0.77837 0.74492 1.93542 1.53151 1.87175 1.61302 1.93535 1.85312 1.48237 1.67961 1.30570 1.10584 1.17672 1.12627 1.17927 0.87030 0.96306 0.90740 1.22211 1.01846 0.98897 0.98896 1.22310 1.03526 0.95068 1.01260 1.20936 1.01184 1.08561 1.23535 0.92303 1.24939 0.95266 0.97346 0.96168 1.69811 1.08829 1.37238 1.36139 0.86564 0.78220 0.84078 0.78862 1.20556 1.21173 1.19994 1.23491 0.88540 0.99278 0.99068 0.91669 0.92345 0.92686 0.94164 0.92550 0.92379 0.91625 0.93946 0.89963 0.89912 0.90041 0.92869 0.90812 0.91565 0.86412 0.86542 0.95548 0.88742 0.94635 0.94483 0.88412 0.95484 0.92695 0.89348 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.05 37.16 0.34 -0.70 16 2 C 0.07 0.56 2.45 -67.71 -0.17 0.40 16 3 C -0.15 -1.17 9.16 37.16 0.34 -0.83 16 4 N -0.50 -5.11 5.21 -221.76 -1.15 -6.27 16 5 C 0.03 0.32 5.33 -2.18 -0.01 0.30 16 6 C -0.14 -1.45 6.17 -25.35 -0.16 -1.61 16 7 C 0.14 1.82 3.40 -66.54 -0.23 1.59 16 8 H 0.11 1.59 6.93 -51.93 -0.36 1.23 16 9 N -1.01 -14.07 3.03 -113.13 -0.34 -14.41 16 10 C 0.09 1.09 8.83 59.85 0.53 1.61 16 11 S 2.59 48.18 4.40 -107.50 -0.47 47.71 16 12 O -0.96 -20.14 14.85 -57.54 -0.85 -20.99 16 13 O -0.96 -20.04 14.21 -57.54 -0.82 -20.85 16 14 C -0.58 -11.28 5.11 37.15 0.19 -11.09 16 15 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 16 C -0.16 -3.96 7.58 37.16 0.28 -3.67 16 17 C -0.16 -4.05 7.80 37.16 0.29 -3.76 16 18 C -0.50 -13.16 8.01 -34.44 -0.28 -13.44 16 19 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 20 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 21 N -0.88 -24.06 9.39 55.43 0.52 -23.54 16 22 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.03 0.29 5.16 -2.01 -0.01 0.28 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.38 6.93 -51.93 -0.36 0.02 16 30 H 0.04 0.35 7.98 -51.93 -0.41 -0.06 16 31 H 0.06 0.49 7.08 -51.93 -0.37 0.12 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.36 7.97 -51.93 -0.41 -0.05 16 35 H 0.08 0.68 7.66 -51.93 -0.40 0.28 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.78 6.98 -51.93 -0.36 0.42 16 38 H 0.05 0.59 7.89 -51.93 -0.41 0.18 16 39 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 40 H 0.07 0.60 6.84 -51.93 -0.35 0.24 16 41 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 42 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 43 H 0.03 0.62 5.96 -51.93 -0.31 0.31 16 44 H 0.09 2.50 5.99 -51.93 -0.31 2.19 16 45 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.10 2.61 6.01 -51.93 -0.31 2.30 16 48 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 49 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 50 H 0.09 1.05 7.71 -51.93 -0.40 0.65 16 51 H 0.05 0.59 6.65 -51.93 -0.35 0.24 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -30.76 386.76 -10.52 -41.28 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -9.15 Total: 3.10 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 0.95 Total: -27.38 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.98 Total: -44.22 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.67 Total: -41.84 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 48.18 SS G_CDS: -0.47 Total: 47.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.76 -10.52 -41.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452107879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.422 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds