Wall clock time and date at job start Tue Mar 31 2020 16:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47509 * 2 1 4 4 N 1.46901 * 109.46846 * 120.00034 * 2 1 3 5 5 C 1.48569 * 110.99968 * 59.87394 * 4 2 1 6 6 C 1.54374 * 104.69724 * 159.09849 * 5 4 2 7 7 C 1.54261 * 105.06407 * 336.08687 * 6 5 4 8 8 H 1.08997 * 110.32458 * 118.99731 * 7 6 5 9 9 N 1.46504 * 110.32380 * 241.10506 * 7 6 5 10 10 C 1.46503 * 119.99806 * 58.54688 * 9 7 6 11 11 S 1.65595 * 120.00112 * 238.54592 * 9 7 6 12 12 O 1.42098 * 104.27605 * 206.07323 * 11 9 7 13 13 O 1.42109 * 104.27513 * 333.92703 * 11 9 7 14 14 C 1.81394 * 104.45093 * 89.99873 * 11 9 7 15 15 C 1.52994 * 109.47118 * 180.02562 * 14 11 9 16 16 C 1.52998 * 109.47422 * 299.99923 * 15 14 11 17 17 C 1.53007 * 109.47474 * 60.00211 * 15 14 11 18 18 C 1.50703 * 109.47238 * 180.02562 * 15 14 11 19 19 H 1.07998 * 119.99945 * 357.69650 * 18 15 14 20 20 C 1.37879 * 120.00064 * 177.69360 * 18 15 14 21 21 N 1.31512 * 120.00070 * 6.58363 * 20 18 15 22 22 Si 1.86800 * 120.00171 * 186.57917 * 20 18 15 23 23 H 1.48497 * 109.46763 * 84.99593 * 22 20 18 24 24 H 1.48494 * 109.47354 * 204.99910 * 22 20 18 25 25 H 1.48502 * 109.46899 * 325.00086 * 22 20 18 26 26 C 1.48854 * 111.13165 * 175.19004 * 4 2 1 27 27 H 1.09003 * 109.46710 * 300.00250 * 1 2 3 28 28 H 1.09001 * 109.46815 * 59.99740 * 1 2 3 29 29 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46710 * 239.99750 * 2 1 3 31 31 H 1.08998 * 109.46913 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.46997 * 299.99865 * 3 2 1 33 33 H 1.09004 * 109.46603 * 60.00034 * 3 2 1 34 34 H 1.09001 * 110.41138 * 40.25855 * 5 4 2 35 35 H 1.09003 * 110.41037 * 277.93706 * 5 4 2 36 36 H 1.08997 * 110.32658 * 94.98423 * 6 5 4 37 37 H 1.09000 * 110.32522 * 217.19022 * 6 5 4 38 38 H 1.08996 * 109.47209 * 89.99832 * 10 9 7 39 39 H 1.08999 * 109.46876 * 210.00032 * 10 9 7 40 40 H 1.09001 * 109.46844 * 329.99633 * 10 9 7 41 41 H 1.09000 * 109.47475 * 300.00312 * 14 11 9 42 42 H 1.09002 * 109.47235 * 59.99960 * 14 11 9 43 43 H 1.08999 * 109.46855 * 66.66838 * 16 15 14 44 44 H 1.08997 * 109.47852 * 186.66736 * 16 15 14 45 45 H 1.09001 * 109.47088 * 306.67063 * 16 15 14 46 46 H 1.09000 * 109.46987 * 59.99494 * 17 15 14 47 47 H 1.08997 * 109.47141 * 179.97438 * 17 15 14 48 48 H 1.09002 * 109.46731 * 300.00043 * 17 15 14 49 49 H 0.97002 * 120.00127 * 179.97438 * 21 20 18 50 50 H 1.09001 * 110.39058 * 82.22154 * 26 4 2 51 51 H 1.08997 * 110.39672 * 319.79959 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5407 -2.0984 1.2353 6 6 2.5195 -2.8215 2.1852 7 6 3.8104 -1.9778 2.1489 8 1 4.0395 -1.5935 3.1428 9 7 4.9281 -2.7791 1.6439 10 6 4.8507 -3.3878 0.3136 11 16 6.2788 -2.9968 2.5768 12 8 7.3188 -3.2333 1.6378 13 8 6.3045 -1.8585 3.4272 14 6 5.9311 -4.4983 3.5334 15 6 7.1194 -4.8081 4.4459 16 6 8.3728 -5.0241 3.5956 17 6 7.3476 -3.6357 5.4022 18 6 6.8308 -6.0559 5.2402 19 1 5.8788 -6.5550 5.1350 20 6 7.7822 -6.5605 6.1013 21 7 8.8879 -5.8856 6.3280 22 14 7.5005 -8.2026 6.9459 23 1 7.9356 -9.3022 6.0478 24 1 8.2852 -8.2524 8.2056 25 1 6.0566 -8.3586 7.2557 26 6 3.5029 -0.8158 1.1801 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9562 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.5818 -2.5395 0.2393 35 1 0.5253 -2.1442 1.6289 36 1 2.1141 -2.8500 3.1965 37 1 2.7175 -3.8319 1.8273 38 1 5.2509 -2.6952 -0.4267 39 1 5.4329 -4.3092 0.3013 40 1 3.8107 -3.6120 0.0766 41 1 5.0384 -4.3444 4.1396 42 1 5.7681 -5.3335 2.8522 43 1 8.6500 -4.0871 3.1126 44 1 9.1908 -5.3602 4.2328 45 1 8.1707 -5.7788 2.8355 46 1 6.4546 -3.4819 6.0080 47 1 8.1938 -3.8567 6.0526 48 1 7.5565 -2.7335 4.8274 49 1 9.5570 -6.2403 6.9341 50 1 3.9652 0.1060 1.5333 51 1 3.8510 -1.0561 0.1755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452107879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:56 Heat of formation + Delta-G solvation = -85.876854 kcal Electronic energy + Delta-G solvation = -28891.377657 eV Core-core repulsion = 25145.214459 eV Total energy + Delta-G solvation = -3746.163199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.55370 -38.17283 -38.13590 -37.24268 -36.83172 -34.09619 -33.63921 -30.23327 -29.71015 -28.41080 -27.84596 -27.71119 -27.25540 -26.59502 -23.23536 -21.69786 -21.16038 -20.98951 -19.69942 -18.92427 -17.92496 -17.61240 -17.08193 -16.91996 -16.67611 -16.29444 -15.49473 -15.27421 -15.14068 -14.97093 -14.66627 -14.55185 -14.43385 -13.89756 -13.85805 -13.79565 -13.57075 -13.19127 -13.14184 -13.04917 -12.93427 -12.89515 -12.80646 -12.79637 -12.67567 -12.49188 -12.25625 -12.22094 -12.11833 -12.07839 -11.94688 -11.78580 -11.68186 -11.60085 -11.58313 -11.35766 -10.67514 -10.39935 -9.94769 -9.42665 -8.03960 -6.22258 -0.65750 1.44526 1.46029 1.54172 1.75159 2.44142 2.89552 2.98205 3.17791 3.25575 3.51257 3.67374 3.88515 4.04253 4.09709 4.12287 4.14784 4.20579 4.33287 4.43801 4.47306 4.57675 4.60135 4.64652 4.75767 4.83495 4.84052 4.85170 4.86983 4.91087 4.95058 4.97780 4.99042 5.02794 5.04898 5.06462 5.19229 5.21854 5.34517 5.37526 5.41812 5.46845 5.58094 5.64003 5.93523 5.95763 6.10564 6.14563 6.33842 6.82397 7.45898 8.95836 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.003089 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.951474 B = 9062.145290 C = 9533.739675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.063 3.937 3 C -0.144 4.144 4 N -0.514 5.514 5 C 0.038 3.962 6 C -0.139 4.139 7 C 0.135 3.865 8 H 0.095 0.905 9 N -0.996 5.996 10 C 0.084 3.916 11 S 2.607 3.393 12 O -0.988 6.988 13 O -0.988 6.988 14 C -0.583 4.583 15 C 0.070 3.930 16 C -0.157 4.157 17 C -0.160 4.160 18 C -0.518 4.518 19 H 0.064 0.936 20 C 0.018 3.982 21 N -0.907 5.907 22 Si 0.954 3.046 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.267 1.267 26 C 0.029 3.971 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.027 0.973 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.038 0.962 47 H 0.073 0.927 48 H 0.030 0.970 49 H 0.262 0.738 50 H 0.075 0.925 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.483 7.819 -14.230 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 C -0.202 4.202 4 N -0.240 5.240 5 C -0.090 4.090 6 C -0.178 4.178 7 C 0.029 3.971 8 H 0.113 0.887 9 N -0.834 5.834 10 C -0.060 4.060 11 S 2.706 3.294 12 O -0.978 6.978 13 O -0.979 6.979 14 C -0.716 4.716 15 C 0.068 3.932 16 C -0.215 4.215 17 C -0.218 4.218 18 C -0.557 4.557 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.546 5.546 22 Si 0.780 3.220 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.191 1.191 26 C -0.100 4.100 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.094 0.906 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.758 8.725 -13.734 23.358 hybrid contribution 0.384 -1.655 0.189 1.710 sum -16.374 7.070 -13.545 22.395 Atomic orbital electron populations 1.21814 0.92940 1.02415 1.02545 1.21899 0.96782 0.95428 0.90462 1.21830 1.00603 0.95184 1.02545 1.65554 1.05259 1.14827 1.38314 1.23118 0.99601 0.87529 0.98712 1.22820 0.93571 0.99675 1.01781 1.21727 0.86276 0.90895 0.98225 0.88671 1.57480 1.34023 1.64031 1.27830 1.21639 1.04402 0.97966 0.82022 1.05022 0.73313 0.76971 0.74112 1.93500 1.55151 1.87334 1.61791 1.93492 1.86110 1.49140 1.69123 1.30492 1.09107 1.19269 1.12729 1.17911 0.88588 0.95405 0.91280 1.22146 1.01585 0.99067 0.98698 1.22240 1.02552 0.95750 1.01237 1.21289 1.01365 1.09340 1.23726 0.91789 1.25686 0.95175 1.00306 0.97007 1.69954 1.09508 1.38499 1.36642 0.85631 0.78330 0.80347 0.77694 1.20176 1.21377 1.19149 1.23380 0.89702 0.98122 0.98822 0.92295 0.91065 0.92154 0.93860 0.93559 0.90867 0.92308 0.92707 0.88811 0.89650 0.88919 0.92395 0.90653 0.88416 0.84778 0.84520 0.95448 0.91140 0.93803 0.94243 0.90848 0.95171 0.92888 0.90632 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.05 71.98 0.65 -0.99 16 2 C 0.06 0.93 2.45 44.91 0.11 1.04 16 3 C -0.14 -2.13 9.16 71.98 0.66 -1.47 16 4 N -0.51 -9.39 5.21 -855.50 -4.45 -13.84 16 5 C 0.04 0.57 5.33 86.45 0.46 1.04 16 6 C -0.14 -2.48 6.17 31.49 0.19 -2.28 16 7 C 0.14 3.23 3.40 45.89 0.16 3.39 16 8 H 0.10 2.64 6.93 -2.39 -0.02 2.62 16 9 N -1.00 -26.25 3.03 -511.82 -1.55 -27.80 16 10 C 0.08 1.72 8.83 127.77 1.13 2.84 16 11 S 2.61 95.53 4.40 -56.49 -0.25 95.28 16 12 O -0.99 -41.00 14.85 -127.65 -1.90 -42.90 16 13 O -0.99 -41.59 14.21 -127.65 -1.81 -43.40 16 14 C -0.58 -21.97 5.11 71.98 0.37 -21.60 16 15 C 0.07 3.39 0.52 -52.93 -0.03 3.36 16 16 C -0.16 -7.81 7.58 71.98 0.55 -7.27 16 17 C -0.16 -8.05 7.80 71.98 0.56 -7.49 16 18 C -0.52 -26.88 8.01 25.60 0.20 -26.68 16 19 H 0.06 3.17 7.75 -2.91 -0.02 3.15 16 20 C 0.02 0.94 5.09 84.66 0.43 1.37 16 21 N -0.91 -50.37 9.39 21.45 0.20 -50.17 16 22 Si 0.95 41.90 29.54 68.60 2.03 43.93 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 26 C 0.03 0.64 5.16 86.39 0.45 1.08 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.65 6.93 -2.39 -0.02 0.63 16 30 H 0.04 0.63 7.98 -2.39 -0.02 0.61 16 31 H 0.05 0.77 7.08 -2.39 -0.02 0.75 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.71 7.97 -2.39 -0.02 0.69 16 35 H 0.09 1.23 7.66 -2.39 -0.02 1.21 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.45 6.98 -2.39 -0.02 1.44 16 38 H 0.06 1.14 7.89 -2.39 -0.02 1.13 16 39 H 0.07 1.54 7.79 -2.39 -0.02 1.52 16 40 H 0.10 1.38 6.84 -2.39 -0.02 1.37 16 41 H 0.13 4.54 8.14 -2.39 -0.02 4.52 16 42 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 43 H 0.03 1.31 5.96 -2.39 -0.01 1.29 16 44 H 0.07 3.83 5.99 -2.39 -0.01 3.81 16 45 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.07 4.03 6.01 -2.39 -0.01 4.02 16 48 H 0.03 1.45 5.46 -2.39 -0.01 1.44 16 49 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 50 H 0.08 1.80 7.71 -2.39 -0.02 1.78 16 51 H 0.06 1.18 6.65 -2.39 -0.02 1.17 16 Total: -1.00 -66.02 386.76 -0.96 -66.98 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.89 Total: 25.58 kcal Atomic # 6 Polarization: -59.54 SS G_CDS: 5.89 Total: -53.65 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -5.80 Total: -91.81 kcal Atomic # 8 Polarization: -82.59 SS G_CDS: -3.71 Total: -86.30 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 95.53 SS G_CDS: -0.25 Total: 95.28 kcal Total: -66.02 -0.96 -66.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452107879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.897 kcal (2) G-P(sol) polarization free energy of solvation -66.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds