Wall clock time and date at job start Tue Mar 31 2020 16:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47383 * 2 1 4 4 N 1.46900 * 109.46992 * 120.00002 * 2 1 3 5 5 C 1.47441 * 111.00151 * 175.85933 * 4 2 1 6 6 C 1.54320 * 107.37018 * 236.65994 * 5 4 2 7 7 C 1.55392 * 102.89927 * 337.89553 * 6 5 4 8 8 H 1.09000 * 110.90293 * 277.37663 * 7 6 5 9 9 N 1.46501 * 111.02751 * 153.63559 * 7 6 5 10 10 C 1.46500 * 119.99669 * 307.60521 * 9 7 6 11 11 S 1.65602 * 120.00283 * 127.60363 * 9 7 6 12 12 O 1.42102 * 104.27747 * 206.07545 * 11 9 7 13 13 O 1.42101 * 104.27513 * 333.92850 * 11 9 7 14 14 C 1.81397 * 104.45034 * 90.00055 * 11 9 7 15 15 C 1.52995 * 109.47013 * 180.02562 * 14 11 9 16 16 C 1.52997 * 109.47408 * 300.00201 * 15 14 11 17 17 C 1.53004 * 109.47252 * 60.00294 * 15 14 11 18 18 C 1.50701 * 109.47107 * 179.97438 * 15 14 11 19 19 H 1.08000 * 119.99807 * 359.97438 * 18 15 14 20 20 C 1.37875 * 120.00083 * 180.02562 * 18 15 14 21 21 N 1.31519 * 119.99799 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00134 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47150 * 90.00036 * 22 20 18 24 24 H 1.48503 * 109.47375 * 209.99861 * 22 20 18 25 25 H 1.48504 * 109.47200 * 330.00104 * 22 20 18 26 26 C 1.47841 * 111.00065 * 55.01325 * 4 2 1 27 27 H 1.09004 * 109.46950 * 294.19547 * 1 2 3 28 28 H 1.09003 * 109.46909 * 54.18689 * 1 2 3 29 29 H 1.08985 * 109.47420 * 174.19030 * 1 2 3 30 30 H 1.08997 * 109.47559 * 239.99937 * 2 1 3 31 31 H 1.08998 * 109.47159 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47177 * 299.99849 * 3 2 1 33 33 H 1.09002 * 109.47131 * 59.99844 * 3 2 1 34 34 H 1.08998 * 109.88895 * 356.14415 * 5 4 2 35 35 H 1.08997 * 109.89013 * 117.17442 * 5 4 2 36 36 H 1.09003 * 110.70050 * 96.18077 * 6 5 4 37 37 H 1.08997 * 110.70585 * 219.40973 * 6 5 4 38 38 H 1.08996 * 109.47735 * 89.99863 * 10 9 7 39 39 H 1.09002 * 109.46663 * 209.99940 * 10 9 7 40 40 H 1.09006 * 109.47319 * 329.99507 * 10 9 7 41 41 H 1.09006 * 109.46664 * 300.00201 * 14 11 9 42 42 H 1.09000 * 109.46953 * 60.00291 * 14 11 9 43 43 H 1.08998 * 109.47335 * 59.99810 * 16 15 14 44 44 H 1.08997 * 109.47278 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.46628 * 299.99922 * 16 15 14 46 46 H 1.08997 * 109.47534 * 59.99083 * 17 15 14 47 47 H 1.08998 * 109.47526 * 180.02562 * 17 15 14 48 48 H 1.09004 * 109.47110 * 299.99891 * 17 15 14 49 49 H 0.97004 * 119.99411 * 180.02562 * 21 20 18 50 50 H 1.08998 * 110.37668 * 265.19696 * 26 4 2 51 51 H 1.09002 * 110.37370 * 27.53653 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4901 -0.7989 1.1849 6 6 3.8449 -2.2961 1.3034 7 6 2.5681 -2.9053 1.9462 8 1 2.5777 -2.7755 3.0284 9 7 2.4245 -4.3194 1.5914 10 6 2.4728 -4.7305 0.1861 11 16 2.2076 -5.4532 2.7787 12 8 2.7148 -6.6542 2.2134 13 8 2.8077 -4.8747 3.9295 14 6 0.4081 -5.5562 2.9830 15 6 0.0758 -6.5835 4.0670 16 6 0.6217 -7.9526 3.6568 17 6 0.7154 -6.1547 5.3892 18 6 -1.4191 -6.6686 4.2372 19 1 -2.0674 -6.0513 3.6329 20 6 -1.9592 -7.5336 5.1651 21 7 -1.1697 -8.2841 5.9020 22 14 -3.8123 -7.6396 5.3755 23 1 -4.3558 -8.6757 4.4610 24 1 -4.1311 -8.0025 6.7798 25 1 -4.4231 -6.3250 5.0529 26 6 1.4501 -2.0534 1.2951 27 1 -0.3633 0.4212 0.9374 28 1 -0.3633 0.6014 -0.8334 29 1 -0.3633 -1.0222 -0.1040 30 1 1.8934 -0.5138 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.8817 -0.3979 0.2500 35 1 3.9099 -0.2505 2.0281 36 1 4.0243 -2.7286 0.3191 37 1 4.7103 -2.4369 1.9510 38 1 3.5027 -4.9535 -0.0922 39 1 1.8580 -5.6197 0.0463 40 1 2.0933 -3.9241 -0.4417 41 1 0.0193 -4.5808 3.2757 42 1 -0.0476 -5.8613 2.0410 43 1 1.7030 -7.8907 3.5340 44 1 0.3846 -8.6845 4.4289 45 1 0.1660 -8.2580 2.7149 46 1 0.3267 -5.1793 5.6815 47 1 0.4791 -6.8867 6.1614 48 1 1.7968 -6.0928 5.2665 49 1 -1.5497 -8.8930 6.5546 50 1 0.5606 -2.0492 1.9251 51 1 1.2113 -2.4355 0.3026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452107880.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:00 Heat of formation + Delta-G solvation = -65.511514 kcal Electronic energy + Delta-G solvation = -29009.393889 eV Core-core repulsion = 25264.113797 eV Total energy + Delta-G solvation = -3745.280091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.76985 -36.61690 -36.35811 -36.20683 -35.27786 -33.34259 -31.66376 -29.53986 -28.77468 -27.15972 -26.70123 -25.76193 -25.72009 -25.22033 -22.39184 -20.77285 -20.13570 -19.41123 -18.48301 -17.54628 -16.72198 -16.10497 -15.82295 -15.43722 -15.27623 -14.81294 -14.62840 -14.17637 -13.98335 -13.90672 -13.56819 -13.18275 -13.01184 -12.61113 -12.53116 -12.50999 -12.45092 -12.31574 -12.24205 -12.04510 -11.68061 -11.52368 -11.49071 -11.34842 -11.11804 -11.07388 -11.06483 -11.01464 -10.92005 -10.73384 -10.66025 -10.37478 -10.27598 -10.10237 -9.65647 -9.58588 -8.94983 -8.62630 -8.49104 -8.40409 -6.03637 -4.15651 0.79969 2.99568 3.25604 3.32995 3.35049 3.75223 4.30775 4.37936 4.40085 4.52424 4.61998 4.72711 4.81847 4.89453 4.95848 5.09235 5.13577 5.20979 5.24318 5.32648 5.42737 5.46966 5.53998 5.58634 5.61355 5.64808 5.67841 5.70122 5.74636 5.81304 5.85231 5.93598 5.97726 6.07856 6.24072 6.37614 6.59760 6.70079 6.79154 6.81233 6.90231 6.91258 7.03967 7.31137 7.50004 7.67596 7.97709 8.09274 8.32696 8.82822 9.49795 10.97679 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.003609 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.164022 B = 7756.432982 C = 8867.263212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.072 3.928 3 C -0.144 4.144 4 N -0.522 5.522 5 C 0.043 3.957 6 C -0.150 4.150 7 C 0.138 3.862 8 H 0.120 0.880 9 N -1.003 6.003 10 C 0.094 3.906 11 S 2.591 3.409 12 O -0.960 6.960 13 O -0.960 6.960 14 C -0.581 4.581 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.163 4.163 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.028 3.972 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.027 0.973 44 H 0.095 0.905 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.095 0.905 48 H 0.027 0.973 49 H 0.262 0.738 50 H 0.088 0.912 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 15.079 -12.972 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 C -0.202 4.202 4 N -0.247 5.247 5 C -0.085 4.085 6 C -0.190 4.190 7 C 0.031 3.969 8 H 0.137 0.863 9 N -0.838 5.838 10 C -0.051 4.051 11 S 2.691 3.309 12 O -0.951 6.951 13 O -0.950 6.950 14 C -0.714 4.714 15 C 0.080 3.920 16 C -0.221 4.221 17 C -0.221 4.221 18 C -0.541 4.541 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.522 5.522 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.101 4.101 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.046 0.954 44 H 0.114 0.886 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.114 0.886 48 H 0.046 0.954 49 H 0.073 0.927 50 H 0.106 0.894 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.310 14.783 -12.004 20.398 hybrid contribution -1.459 -0.314 -0.912 1.749 sum 5.851 14.470 -12.916 20.259 Atomic orbital electron populations 1.21903 0.94153 1.02109 1.02501 1.21807 0.95887 0.95213 0.90748 1.21860 1.00926 0.95233 1.02137 1.63661 1.06090 1.16859 1.38105 1.22810 0.88251 0.95768 1.01709 1.23139 0.98725 0.95308 1.01825 1.22039 0.94108 0.79569 1.01234 0.86268 1.57735 1.88418 1.18232 1.19370 1.21370 1.02049 1.00209 0.81520 1.05836 0.79442 0.72866 0.72797 1.93539 1.78855 1.44978 1.77703 1.93531 1.75658 1.77450 1.48403 1.30563 1.21146 1.09880 1.09844 1.17929 0.97603 0.88471 0.88003 1.22275 0.96853 1.01079 1.01929 1.22272 0.96569 1.01693 1.01569 1.20938 0.89583 1.22928 1.20639 0.92319 1.24940 0.98058 0.95311 0.95439 1.69806 1.34238 1.24822 1.23308 0.86537 0.85347 0.78361 0.77404 1.20667 1.21111 1.19935 1.23449 0.98465 0.87514 1.00719 0.91470 0.92284 0.92520 0.94320 0.92710 0.92408 0.91655 0.92474 0.90104 0.90868 0.90011 0.92674 0.90784 0.91614 0.86388 0.86522 0.95418 0.88630 0.94519 0.94429 0.88647 0.95410 0.92742 0.89387 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.86 37.16 0.33 -0.91 16 2 C 0.07 0.62 2.23 -67.71 -0.15 0.47 16 3 C -0.14 -1.06 9.13 37.16 0.34 -0.72 16 4 N -0.52 -5.33 5.03 -223.30 -1.12 -6.45 16 5 C 0.04 0.40 6.15 -2.84 -0.02 0.38 16 6 C -0.15 -1.57 6.52 -24.77 -0.16 -1.73 16 7 C 0.14 1.75 3.41 -65.65 -0.22 1.52 16 8 H 0.12 1.68 6.92 -51.93 -0.36 1.32 16 9 N -1.00 -14.07 3.15 -112.18 -0.35 -14.42 16 10 C 0.09 1.08 8.83 59.85 0.53 1.61 16 11 S 2.59 48.27 4.41 -107.50 -0.47 47.79 16 12 O -0.96 -20.13 14.71 -57.54 -0.85 -20.98 16 13 O -0.96 -20.05 14.20 -57.54 -0.82 -20.87 16 14 C -0.58 -11.30 5.12 37.15 0.19 -11.11 16 15 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 16 C -0.16 -4.04 7.78 37.16 0.29 -3.75 16 17 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 18 C -0.50 -13.14 8.01 -34.44 -0.28 -13.42 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -24.13 9.35 55.43 0.52 -23.61 16 22 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.03 0.31 5.02 -2.30 -0.01 0.30 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.49 7.01 -51.94 -0.36 0.13 16 30 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.05 0.39 6.76 -51.93 -0.35 0.04 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.46 6.62 -51.93 -0.34 0.12 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.71 7.02 -51.93 -0.36 0.35 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.07 0.85 7.79 -51.93 -0.40 0.44 16 40 H 0.07 0.59 6.40 -51.93 -0.33 0.26 16 41 H 0.12 2.10 8.14 -51.92 -0.42 1.67 16 42 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 43 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 44 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 48 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 49 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 50 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.06 0.57 5.58 -51.93 -0.29 0.28 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -30.80 385.20 -10.40 -41.20 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -9.04 Total: 3.52 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 0.95 Total: -27.58 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.96 Total: -44.48 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -1.66 Total: -41.85 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 48.27 SS G_CDS: -0.47 Total: 47.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.80 -10.40 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452107880.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.311 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds