Wall clock time and date at job start Tue Mar 31 2020 16:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47383 * 2 1 4 4 N 1.46900 * 109.46992 * 120.00002 * 2 1 3 5 5 C 1.47441 * 111.00151 * 175.85933 * 4 2 1 6 6 C 1.54320 * 107.37018 * 236.65994 * 5 4 2 7 7 C 1.55392 * 102.89927 * 337.89553 * 6 5 4 8 8 H 1.09000 * 110.90293 * 277.37663 * 7 6 5 9 9 N 1.46501 * 111.02751 * 153.63559 * 7 6 5 10 10 C 1.46500 * 119.99669 * 307.60521 * 9 7 6 11 11 S 1.65602 * 120.00283 * 127.60363 * 9 7 6 12 12 O 1.42102 * 104.27747 * 206.07545 * 11 9 7 13 13 O 1.42101 * 104.27513 * 333.92850 * 11 9 7 14 14 C 1.81397 * 104.45034 * 90.00055 * 11 9 7 15 15 C 1.52995 * 109.47013 * 180.02562 * 14 11 9 16 16 C 1.52997 * 109.47408 * 300.00201 * 15 14 11 17 17 C 1.53004 * 109.47252 * 60.00294 * 15 14 11 18 18 C 1.50701 * 109.47107 * 179.97438 * 15 14 11 19 19 H 1.08000 * 119.99807 * 359.97438 * 18 15 14 20 20 C 1.37875 * 120.00083 * 180.02562 * 18 15 14 21 21 N 1.31519 * 119.99799 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00134 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47150 * 90.00036 * 22 20 18 24 24 H 1.48503 * 109.47375 * 209.99861 * 22 20 18 25 25 H 1.48504 * 109.47200 * 330.00104 * 22 20 18 26 26 C 1.47841 * 111.00065 * 55.01325 * 4 2 1 27 27 H 1.09004 * 109.46950 * 294.19547 * 1 2 3 28 28 H 1.09003 * 109.46909 * 54.18689 * 1 2 3 29 29 H 1.08985 * 109.47420 * 174.19030 * 1 2 3 30 30 H 1.08997 * 109.47559 * 239.99937 * 2 1 3 31 31 H 1.08998 * 109.47159 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47177 * 299.99849 * 3 2 1 33 33 H 1.09002 * 109.47131 * 59.99844 * 3 2 1 34 34 H 1.08998 * 109.88895 * 356.14415 * 5 4 2 35 35 H 1.08997 * 109.89013 * 117.17442 * 5 4 2 36 36 H 1.09003 * 110.70050 * 96.18077 * 6 5 4 37 37 H 1.08997 * 110.70585 * 219.40973 * 6 5 4 38 38 H 1.08996 * 109.47735 * 89.99863 * 10 9 7 39 39 H 1.09002 * 109.46663 * 209.99940 * 10 9 7 40 40 H 1.09006 * 109.47319 * 329.99507 * 10 9 7 41 41 H 1.09006 * 109.46664 * 300.00201 * 14 11 9 42 42 H 1.09000 * 109.46953 * 60.00291 * 14 11 9 43 43 H 1.08998 * 109.47335 * 59.99810 * 16 15 14 44 44 H 1.08997 * 109.47278 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.46628 * 299.99922 * 16 15 14 46 46 H 1.08997 * 109.47534 * 59.99083 * 17 15 14 47 47 H 1.08998 * 109.47526 * 180.02562 * 17 15 14 48 48 H 1.09004 * 109.47110 * 299.99891 * 17 15 14 49 49 H 0.97004 * 119.99411 * 180.02562 * 21 20 18 50 50 H 1.08998 * 110.37668 * 265.19696 * 26 4 2 51 51 H 1.09002 * 110.37370 * 27.53653 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4901 -0.7989 1.1849 6 6 3.8449 -2.2961 1.3034 7 6 2.5681 -2.9053 1.9462 8 1 2.5777 -2.7755 3.0284 9 7 2.4245 -4.3194 1.5914 10 6 2.4728 -4.7305 0.1861 11 16 2.2076 -5.4532 2.7787 12 8 2.7148 -6.6542 2.2134 13 8 2.8077 -4.8747 3.9295 14 6 0.4081 -5.5562 2.9830 15 6 0.0758 -6.5835 4.0670 16 6 0.6217 -7.9526 3.6568 17 6 0.7154 -6.1547 5.3892 18 6 -1.4191 -6.6686 4.2372 19 1 -2.0674 -6.0513 3.6329 20 6 -1.9592 -7.5336 5.1651 21 7 -1.1697 -8.2841 5.9020 22 14 -3.8123 -7.6396 5.3755 23 1 -4.3558 -8.6757 4.4610 24 1 -4.1311 -8.0025 6.7798 25 1 -4.4231 -6.3250 5.0529 26 6 1.4501 -2.0534 1.2951 27 1 -0.3633 0.4212 0.9374 28 1 -0.3633 0.6014 -0.8334 29 1 -0.3633 -1.0222 -0.1040 30 1 1.8934 -0.5138 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.8817 -0.3979 0.2500 35 1 3.9099 -0.2505 2.0281 36 1 4.0243 -2.7286 0.3191 37 1 4.7103 -2.4369 1.9510 38 1 3.5027 -4.9535 -0.0922 39 1 1.8580 -5.6197 0.0463 40 1 2.0933 -3.9241 -0.4417 41 1 0.0193 -4.5808 3.2757 42 1 -0.0476 -5.8613 2.0410 43 1 1.7030 -7.8907 3.5340 44 1 0.3846 -8.6845 4.4289 45 1 0.1660 -8.2580 2.7149 46 1 0.3267 -5.1793 5.6815 47 1 0.4791 -6.8867 6.1614 48 1 1.7968 -6.0928 5.2665 49 1 -1.5497 -8.8930 6.5546 50 1 0.5606 -2.0492 1.9251 51 1 1.2113 -2.4355 0.3026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452107880.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:59 Heat of formation + Delta-G solvation = -85.668194 kcal Electronic energy + Delta-G solvation = -29010.267948 eV Core-core repulsion = 25264.113797 eV Total energy + Delta-G solvation = -3746.154150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.59038 -38.18731 -38.14549 -37.24389 -36.83181 -34.15404 -33.63421 -30.29120 -29.61173 -28.42684 -27.80301 -27.70737 -27.26249 -26.70496 -23.14756 -21.80068 -21.23643 -20.84217 -19.74226 -18.96491 -17.93442 -17.64605 -16.98157 -16.93663 -16.67739 -16.36168 -15.56904 -15.18106 -14.98719 -14.78155 -14.70248 -14.64843 -14.50979 -14.42054 -13.87298 -13.73891 -13.33924 -13.27386 -13.14733 -13.03826 -12.91374 -12.89534 -12.81520 -12.78540 -12.54614 -12.49170 -12.37298 -12.20522 -12.17454 -12.12323 -11.95978 -11.79991 -11.68092 -11.58961 -11.57424 -11.35551 -10.64706 -10.42130 -9.93592 -9.23063 -8.03488 -6.22233 -0.67287 1.43772 1.45623 1.54329 1.72006 2.43958 2.87333 2.96484 3.18316 3.24508 3.50694 3.65748 3.89549 4.01901 4.07898 4.11774 4.15736 4.18593 4.30869 4.40839 4.48355 4.52938 4.58222 4.62542 4.76574 4.83318 4.84887 4.85760 4.86425 4.94646 4.97485 4.97908 4.99394 5.01794 5.06109 5.08099 5.15346 5.29878 5.36886 5.37883 5.44843 5.48287 5.60323 5.63942 5.96019 6.02796 6.10413 6.21510 6.33375 6.82414 7.46126 8.96420 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.003609 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.164022 B = 7756.432982 C = 8867.263212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 C -0.140 4.140 4 N -0.533 5.533 5 C 0.047 3.953 6 C -0.146 4.146 7 C 0.128 3.872 8 H 0.099 0.901 9 N -0.993 5.993 10 C 0.083 3.917 11 S 2.608 3.392 12 O -0.986 6.986 13 O -0.987 6.987 14 C -0.584 4.584 15 C 0.070 3.930 16 C -0.159 4.159 17 C -0.159 4.159 18 C -0.517 4.517 19 H 0.063 0.937 20 C 0.017 3.983 21 N -0.908 5.908 22 Si 0.954 3.046 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.267 1.267 26 C 0.034 3.966 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.031 0.969 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.071 0.929 48 H 0.031 0.969 49 H 0.261 0.739 50 H 0.079 0.921 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 16.819 -15.238 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.038 4.038 3 C -0.198 4.198 4 N -0.259 5.259 5 C -0.081 4.081 6 C -0.186 4.186 7 C 0.021 3.979 8 H 0.117 0.883 9 N -0.830 5.830 10 C -0.061 4.061 11 S 2.707 3.293 12 O -0.976 6.976 13 O -0.978 6.978 14 C -0.717 4.717 15 C 0.068 3.932 16 C -0.217 4.217 17 C -0.217 4.217 18 C -0.556 4.556 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.547 5.547 22 Si 0.780 3.220 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 C -0.096 4.096 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.090 0.910 48 H 0.050 0.950 49 H 0.071 0.929 50 H 0.097 0.903 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.000 16.524 -14.271 22.928 hybrid contribution -1.317 -0.798 -0.246 1.559 sum 5.683 15.726 -14.517 22.144 Atomic orbital electron populations 1.21899 0.94112 1.02020 1.02518 1.21896 0.95961 0.95737 0.90248 1.21834 1.01167 0.94421 1.02372 1.63660 1.06600 1.16316 1.39350 1.22807 0.87795 0.94858 1.02676 1.23141 0.97353 0.95987 1.02106 1.22187 0.96338 0.78789 1.00620 0.88289 1.57320 1.87979 1.18072 1.19609 1.21674 1.02958 1.01480 0.80015 1.05000 0.78644 0.72801 0.72838 1.93498 1.79038 1.46894 1.78167 1.93489 1.75933 1.77904 1.50447 1.30493 1.22790 1.09233 1.09169 1.17915 0.96776 0.89426 0.89101 1.22202 0.97189 1.01100 1.01230 1.22197 0.96921 1.00973 1.01576 1.21286 0.90843 1.22847 1.20613 0.91901 1.25685 1.01954 0.95197 0.95372 1.69949 1.35745 1.25289 1.23713 0.85612 0.80725 0.78530 0.77095 1.20302 1.21258 1.19149 1.23355 0.97465 0.87792 1.00959 0.92572 0.90873 0.92951 0.93610 0.92288 0.91053 0.92560 0.90661 0.90170 0.89581 0.90392 0.91857 0.90737 0.88562 0.84916 0.84624 0.95027 0.91039 0.94039 0.94197 0.91038 0.95039 0.92919 0.90256 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.86 71.98 0.64 -1.50 16 2 C 0.07 1.01 2.23 44.92 0.10 1.11 16 3 C -0.14 -1.71 9.13 71.98 0.66 -1.05 16 4 N -0.53 -9.73 5.03 -860.38 -4.33 -14.06 16 5 C 0.05 0.75 6.15 86.65 0.53 1.28 16 6 C -0.15 -2.74 6.52 31.86 0.21 -2.53 16 7 C 0.13 3.04 3.41 46.47 0.16 3.20 16 8 H 0.10 2.77 6.92 -2.39 -0.02 2.76 16 9 N -0.99 -26.20 3.15 -508.82 -1.60 -27.80 16 10 C 0.08 1.68 8.83 127.77 1.13 2.81 16 11 S 2.61 95.75 4.41 -56.49 -0.25 95.50 16 12 O -0.99 -40.86 14.71 -127.65 -1.88 -42.74 16 13 O -0.99 -41.46 14.20 -127.65 -1.81 -43.27 16 14 C -0.58 -22.25 5.12 71.98 0.37 -21.88 16 15 C 0.07 3.39 0.52 -52.93 -0.03 3.36 16 16 C -0.16 -7.96 7.78 71.98 0.56 -7.40 16 17 C -0.16 -7.99 7.77 71.98 0.56 -7.43 16 18 C -0.52 -26.97 8.01 25.60 0.21 -26.77 16 19 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 20 C 0.02 0.92 5.15 84.65 0.44 1.35 16 21 N -0.91 -50.54 9.35 21.45 0.20 -50.34 16 22 Si 0.95 42.17 29.54 68.60 2.03 44.20 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 C 0.03 0.68 5.02 86.77 0.44 1.11 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.79 7.01 -2.39 -0.02 0.77 16 30 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 31 H 0.06 0.67 6.76 -2.39 -0.02 0.65 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.96 6.62 -2.39 -0.02 0.94 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.40 7.02 -2.39 -0.02 1.38 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 39 H 0.07 1.53 7.79 -2.39 -0.02 1.51 16 40 H 0.10 1.37 6.40 -2.38 -0.02 1.35 16 41 H 0.13 4.59 8.14 -2.39 -0.02 4.57 16 42 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 43 H 0.03 1.51 5.46 -2.39 -0.01 1.49 16 44 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 45 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 48 H 0.03 1.51 5.46 -2.38 -0.01 1.50 16 49 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 50 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.07 1.19 5.58 -2.39 -0.01 1.17 16 Total: -1.00 -66.00 385.20 -0.79 -66.79 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.89 Total: 26.05 kcal Atomic # 6 Polarization: -60.29 SS G_CDS: 5.96 Total: -54.33 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -5.73 Total: -92.20 kcal Atomic # 8 Polarization: -82.32 SS G_CDS: -3.69 Total: -86.01 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 95.75 SS G_CDS: -0.25 Total: 95.50 kcal Total: -66.00 -0.79 -66.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452107880.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.874 kcal (2) G-P(sol) polarization free energy of solvation -66.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds