Wall clock time and date at job start Tue Mar 31 2020 16:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47334 * 2 1 4 4 N 1.46507 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99751 * 179.97438 * 4 3 2 6 6 O 1.21545 * 120.00300 * 0.02562 * 5 4 3 7 7 C 1.47862 * 119.99708 * 179.97438 * 5 4 3 8 8 C 1.39705 * 120.07577 * 0.02562 * 7 5 4 9 9 C 1.38053 * 120.14642 * 179.97438 * 8 7 5 10 10 C 1.38093 * 120.29653 * 0.02562 * 9 8 7 11 11 C 1.39667 * 120.14581 * 0.04310 * 10 9 8 12 12 C 1.47863 * 120.07584 * 179.97438 * 11 10 9 13 13 O 1.21544 * 120.00084 * 179.97438 * 12 11 10 14 14 N 1.34780 * 119.99669 * 0.02562 * 12 11 10 15 15 C 1.46502 * 119.99548 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.46568 * 179.97438 * 15 14 12 17 17 C 1.52990 * 109.47185 * 299.99565 * 16 15 14 18 18 C 1.52994 * 109.47235 * 60.00291 * 16 15 14 19 19 C 1.50705 * 109.46798 * 179.97438 * 16 15 14 20 20 H 1.08004 * 119.99961 * 1.34842 * 19 16 15 21 21 C 1.37873 * 120.00053 * 181.34596 * 19 16 15 22 22 N 1.31512 * 120.00047 * 193.97439 * 21 19 16 23 23 Si 1.86803 * 119.99832 * 13.97959 * 21 19 16 24 24 H 1.48498 * 109.47121 * 84.54741 * 23 21 19 25 25 H 1.48505 * 109.46922 * 204.54961 * 23 21 19 26 26 H 1.48499 * 109.46929 * 324.54486 * 23 21 19 27 27 C 1.39294 * 120.07371 * 180.34527 * 7 5 4 28 28 H 1.08994 * 109.47419 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46799 * 300.00274 * 1 2 3 30 30 H 1.09003 * 109.46858 * 59.99344 * 1 2 3 31 31 H 1.08998 * 109.46799 * 239.99726 * 2 1 3 32 32 H 1.09003 * 109.46858 * 120.00656 * 2 1 3 33 33 H 1.08998 * 109.47401 * 60.00095 * 3 2 1 34 34 H 1.08998 * 109.47253 * 299.99576 * 3 2 1 35 35 H 0.96994 * 120.00003 * 0.02562 * 4 3 2 36 36 H 1.08009 * 119.92283 * 0.02562 * 8 7 5 37 37 H 1.07999 * 119.85202 * 180.02562 * 9 8 7 38 38 H 1.08006 * 119.93025 * 180.02562 * 10 9 8 39 39 H 0.97004 * 120.00191 * 359.97438 * 14 12 11 40 40 H 1.08996 * 109.47293 * 299.99640 * 15 14 12 41 41 H 1.08994 * 109.47395 * 60.00253 * 15 14 12 42 42 H 1.09007 * 109.47421 * 69.37406 * 17 16 15 43 43 H 1.08997 * 109.47462 * 189.36734 * 17 16 15 44 44 H 1.08997 * 109.47603 * 309.37467 * 17 16 15 45 45 H 1.08994 * 109.47742 * 59.99353 * 18 16 15 46 46 H 1.08994 * 109.47179 * 179.97438 * 18 16 15 47 47 H 1.09002 * 109.47243 * 299.99564 * 18 16 15 48 48 H 0.97006 * 119.99755 * 179.97438 * 22 21 19 49 49 H 1.08006 * 120.14907 * 0.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1790 2.6095 0.0002 6 8 3.5714 3.6622 -0.0002 7 6 5.6577 2.6094 0.0014 8 6 6.3577 1.4004 0.0024 9 6 7.7382 1.3986 0.0030 10 6 8.4364 2.5900 0.0031 11 6 7.7490 3.8058 0.0036 12 6 8.4982 5.0806 0.0043 13 8 7.8986 6.1378 0.0042 14 7 9.8460 5.0701 0.0039 15 6 10.5882 6.3332 0.0041 16 6 12.0903 6.0419 0.0043 17 6 12.4535 5.2369 1.2536 18 6 12.4539 5.2368 -1.2449 19 6 12.8539 7.3412 0.0038 20 1 12.3213 8.2805 0.0254 21 6 14.2323 7.3307 -0.0241 22 7 14.9039 8.4276 0.2500 23 14 15.1459 5.7583 -0.4515 24 1 15.2473 5.6304 -1.9275 25 1 16.5089 5.8024 0.1364 26 1 14.4077 4.5924 0.0969 27 6 6.3558 3.8147 0.0082 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.9900 0.6023 0.0006 36 1 5.8175 0.4650 0.0019 37 1 8.2746 0.4612 0.0034 38 1 9.5165 2.5817 0.0032 39 1 10.3245 4.2263 0.0036 40 1 10.3292 6.9069 -0.8857 41 1 10.3296 6.9065 0.8942 42 1 12.0347 4.2336 1.1739 43 1 13.5380 5.1718 1.3414 44 1 12.0466 5.7314 2.1356 45 1 12.1951 5.8103 -2.1349 46 1 13.5240 5.0297 -1.2449 47 1 11.9016 4.2971 -1.2450 48 1 15.8738 8.4201 0.2307 49 1 5.8195 4.7522 0.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457987619.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:56 Heat of formation + Delta-G solvation = -43.767061 kcal Electronic energy + Delta-G solvation = -27653.631251 eV Core-core repulsion = 23773.850119 eV Total energy + Delta-G solvation = -3879.781132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.67610 -39.66473 -38.13002 -36.71110 -36.21944 -33.59835 -33.22135 -31.81213 -31.33332 -31.09670 -27.01464 -26.45604 -26.14426 -25.02290 -24.14864 -23.08226 -22.10965 -21.33658 -20.03297 -19.35300 -18.44281 -16.78492 -16.59014 -16.41002 -16.23481 -16.07780 -15.52008 -15.20686 -15.04371 -14.77962 -14.64712 -14.38498 -14.05862 -13.61676 -13.42575 -13.35763 -13.03633 -12.93209 -12.65896 -12.57592 -12.50786 -12.32587 -12.23579 -12.08526 -11.68521 -11.59021 -11.43332 -11.34889 -10.47829 -10.36154 -10.29401 -10.21086 -10.10802 -9.71496 -9.57090 -9.32069 -9.28872 -9.15965 -8.72510 -8.59717 -8.47636 -6.16742 -4.14287 0.37176 0.83242 2.38194 2.70586 3.09662 3.21173 3.27872 3.36326 3.46946 3.75891 4.21603 4.32507 4.32942 4.42339 4.42983 4.52142 4.68324 4.82019 4.88966 5.08564 5.09337 5.10285 5.13598 5.23739 5.32033 5.48356 5.57709 5.58905 5.66935 5.71729 5.89818 5.94356 5.99098 6.00960 6.01930 6.03261 6.30049 6.40949 6.46281 6.47734 6.58929 6.65230 6.71112 6.90900 7.07189 7.17330 7.38910 7.68741 7.82193 7.85404 8.40766 8.48872 8.88774 9.46722 10.96262 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.034525 B = 0.001986 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.807713 B =14093.264895 C =14680.624951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.730 5.730 5 C 0.560 3.440 6 O -0.529 6.529 7 C -0.147 4.147 8 C -0.069 4.069 9 C -0.132 4.132 10 C -0.061 4.061 11 C -0.131 4.131 12 C 0.547 3.453 13 O -0.537 6.537 14 N -0.715 5.715 15 C 0.141 3.859 16 C 0.028 3.972 17 C -0.142 4.142 18 C -0.148 4.148 19 C -0.513 4.513 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.890 5.890 23 Si 0.885 3.115 24 H -0.286 1.286 25 H -0.305 1.305 26 H -0.249 1.249 27 C -0.002 4.002 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.399 0.601 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.395 0.605 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.020 0.980 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.042 0.958 47 H 0.028 0.972 48 H 0.265 0.735 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.172 -23.724 -0.481 31.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.383 5.383 5 C 0.348 3.652 6 O -0.405 6.405 7 C -0.150 4.150 8 C -0.088 4.088 9 C -0.150 4.150 10 C -0.080 4.080 11 C -0.134 4.134 12 C 0.333 3.667 13 O -0.415 6.415 14 N -0.366 5.366 15 C 0.019 3.981 16 C 0.026 3.974 17 C -0.200 4.200 18 C -0.205 4.205 19 C -0.551 4.551 20 H 0.095 0.905 21 C -0.127 4.127 22 N -0.526 5.526 23 Si 0.718 3.282 24 H -0.214 1.214 25 H -0.234 1.234 26 H -0.176 1.176 27 C -0.022 4.022 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.231 0.769 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.047 0.953 48 H 0.075 0.925 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.860 -22.059 -0.455 31.059 hybrid contribution 1.246 -1.684 -0.320 2.119 sum -20.613 -23.742 -0.774 31.452 Atomic orbital electron populations 1.21679 0.94384 1.02249 1.02492 1.21744 0.97180 0.95711 1.02782 1.21446 0.79055 0.97301 1.02815 1.45902 1.07522 1.08514 1.76384 1.18238 0.87090 0.83736 0.76174 1.90814 1.69781 1.31072 1.48876 1.19819 0.92774 0.94256 1.08127 1.21406 0.94707 0.96719 0.95949 1.21036 0.93807 0.98389 1.01755 1.21623 1.00494 0.91718 0.94205 1.20140 0.94065 0.93876 1.05321 1.18147 0.82665 0.88320 0.77554 1.90788 1.68760 1.31976 1.49954 1.46247 1.05475 1.11402 1.73498 1.21585 0.91490 0.83166 1.01879 1.18738 0.90902 0.96230 0.91501 1.22301 1.01610 0.96692 0.99353 1.22365 0.99589 0.98116 1.00401 1.20701 0.91066 0.91177 1.52182 0.90474 1.24972 0.97481 0.96052 0.94208 1.69951 1.07503 1.28228 1.46935 0.87296 0.77591 0.85054 0.78264 1.21352 1.23369 1.17559 1.21409 0.92532 0.98501 0.89774 0.92105 0.92250 0.92246 0.91234 0.91229 0.91215 0.91215 0.76525 0.85441 0.84614 0.84893 0.76890 0.91652 0.91553 0.96075 0.92439 0.93290 0.92672 0.93967 0.95316 0.92537 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.91 37.16 0.37 -0.18 16 2 C -0.14 -0.52 6.05 -26.73 -0.16 -0.68 16 3 C 0.12 0.77 5.67 -4.04 -0.02 0.75 16 4 N -0.73 -5.34 5.51 -61.25 -0.34 -5.67 16 5 C 0.56 6.37 7.77 -12.32 -0.10 6.28 16 6 O -0.53 -8.22 16.34 5.33 0.09 -8.13 16 7 C -0.15 -1.58 5.87 -105.02 -0.62 -2.19 16 8 C -0.07 -0.51 9.54 -39.10 -0.37 -0.88 16 9 C -0.13 -0.98 10.02 -39.70 -0.40 -1.38 16 10 C -0.06 -0.61 9.54 -39.10 -0.37 -0.98 16 11 C -0.13 -1.74 5.87 -105.02 -0.62 -2.36 16 12 C 0.55 9.26 7.77 -12.32 -0.10 9.16 16 13 O -0.54 -11.18 16.34 5.33 0.09 -11.10 16 14 N -0.72 -11.66 4.95 -61.24 -0.30 -11.96 16 15 C 0.14 2.80 4.49 -4.04 -0.02 2.78 16 16 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 17 C -0.14 -2.81 7.53 37.15 0.28 -2.53 16 18 C -0.15 -2.91 7.52 37.15 0.28 -2.63 16 19 C -0.51 -13.63 8.62 -34.44 -0.30 -13.93 16 20 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 21 C 0.08 2.08 5.32 -17.82 -0.09 1.98 16 22 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 23 Si 0.89 20.72 22.79 -169.99 -3.87 16.85 16 24 H -0.29 -6.68 7.10 56.52 0.40 -6.28 16 25 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.25 -5.25 4.65 56.52 0.26 -4.99 16 27 C 0.00 -0.03 9.14 -38.78 -0.35 -0.39 16 28 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 1.69 6.50 -40.82 -0.27 1.42 16 36 H 0.13 0.47 6.39 -52.48 -0.34 0.13 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.13 1.10 6.39 -52.48 -0.34 0.76 16 39 H 0.40 5.42 4.28 -40.82 -0.17 5.24 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.02 0.34 7.13 -51.92 -0.37 -0.03 16 43 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 44 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 47 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.15 2.34 7.23 -52.48 -0.38 1.96 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -34.18 385.10 -7.75 -41.93 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.32 Total: 4.55 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.67 Total: -6.67 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.13 Total: -43.24 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.17 Total: -19.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -3.87 Total: 16.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.18 -7.75 -41.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987619.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.838 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds