Wall clock time and date at job start Tue Mar 31 2020 16:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47334 * 2 1 4 4 N 1.46507 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99751 * 179.97438 * 4 3 2 6 6 O 1.21545 * 120.00300 * 0.02562 * 5 4 3 7 7 C 1.47862 * 119.99708 * 179.97438 * 5 4 3 8 8 C 1.39705 * 120.07577 * 0.02562 * 7 5 4 9 9 C 1.38053 * 120.14642 * 179.97438 * 8 7 5 10 10 C 1.38093 * 120.29653 * 0.02562 * 9 8 7 11 11 C 1.39667 * 120.14581 * 0.04310 * 10 9 8 12 12 C 1.47863 * 120.07584 * 179.97438 * 11 10 9 13 13 O 1.21544 * 120.00084 * 179.97438 * 12 11 10 14 14 N 1.34780 * 119.99669 * 0.02562 * 12 11 10 15 15 C 1.46502 * 119.99548 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.46568 * 179.97438 * 15 14 12 17 17 C 1.52990 * 109.47185 * 299.99565 * 16 15 14 18 18 C 1.52994 * 109.47235 * 60.00291 * 16 15 14 19 19 C 1.50705 * 109.46798 * 179.97438 * 16 15 14 20 20 H 1.08004 * 119.99961 * 1.34842 * 19 16 15 21 21 C 1.37873 * 120.00053 * 181.34596 * 19 16 15 22 22 N 1.31512 * 120.00047 * 193.97439 * 21 19 16 23 23 Si 1.86803 * 119.99832 * 13.97959 * 21 19 16 24 24 H 1.48498 * 109.47121 * 84.54741 * 23 21 19 25 25 H 1.48505 * 109.46922 * 204.54961 * 23 21 19 26 26 H 1.48499 * 109.46929 * 324.54486 * 23 21 19 27 27 C 1.39294 * 120.07371 * 180.34527 * 7 5 4 28 28 H 1.08994 * 109.47419 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46799 * 300.00274 * 1 2 3 30 30 H 1.09003 * 109.46858 * 59.99344 * 1 2 3 31 31 H 1.08998 * 109.46799 * 239.99726 * 2 1 3 32 32 H 1.09003 * 109.46858 * 120.00656 * 2 1 3 33 33 H 1.08998 * 109.47401 * 60.00095 * 3 2 1 34 34 H 1.08998 * 109.47253 * 299.99576 * 3 2 1 35 35 H 0.96994 * 120.00003 * 0.02562 * 4 3 2 36 36 H 1.08009 * 119.92283 * 0.02562 * 8 7 5 37 37 H 1.07999 * 119.85202 * 180.02562 * 9 8 7 38 38 H 1.08006 * 119.93025 * 180.02562 * 10 9 8 39 39 H 0.97004 * 120.00191 * 359.97438 * 14 12 11 40 40 H 1.08996 * 109.47293 * 299.99640 * 15 14 12 41 41 H 1.08994 * 109.47395 * 60.00253 * 15 14 12 42 42 H 1.09007 * 109.47421 * 69.37406 * 17 16 15 43 43 H 1.08997 * 109.47462 * 189.36734 * 17 16 15 44 44 H 1.08997 * 109.47603 * 309.37467 * 17 16 15 45 45 H 1.08994 * 109.47742 * 59.99353 * 18 16 15 46 46 H 1.08994 * 109.47179 * 179.97438 * 18 16 15 47 47 H 1.09002 * 109.47243 * 299.99564 * 18 16 15 48 48 H 0.97006 * 119.99755 * 179.97438 * 22 21 19 49 49 H 1.08006 * 120.14907 * 0.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1790 2.6095 0.0002 6 8 3.5714 3.6622 -0.0002 7 6 5.6577 2.6094 0.0014 8 6 6.3577 1.4004 0.0024 9 6 7.7382 1.3986 0.0030 10 6 8.4364 2.5900 0.0031 11 6 7.7490 3.8058 0.0036 12 6 8.4982 5.0806 0.0043 13 8 7.8986 6.1378 0.0042 14 7 9.8460 5.0701 0.0039 15 6 10.5882 6.3332 0.0041 16 6 12.0903 6.0419 0.0043 17 6 12.4535 5.2369 1.2536 18 6 12.4539 5.2368 -1.2449 19 6 12.8539 7.3412 0.0038 20 1 12.3213 8.2805 0.0254 21 6 14.2323 7.3307 -0.0241 22 7 14.9039 8.4276 0.2500 23 14 15.1459 5.7583 -0.4515 24 1 15.2473 5.6304 -1.9275 25 1 16.5089 5.8024 0.1364 26 1 14.4077 4.5924 0.0969 27 6 6.3558 3.8147 0.0082 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.9900 0.6023 0.0006 36 1 5.8175 0.4650 0.0019 37 1 8.2746 0.4612 0.0034 38 1 9.5165 2.5817 0.0032 39 1 10.3245 4.2263 0.0036 40 1 10.3292 6.9069 -0.8857 41 1 10.3296 6.9065 0.8942 42 1 12.0347 4.2336 1.1739 43 1 13.5380 5.1718 1.3414 44 1 12.0466 5.7314 2.1356 45 1 12.1951 5.8103 -2.1349 46 1 13.5240 5.0297 -1.2449 47 1 11.9016 4.2971 -1.2450 48 1 15.8738 8.4201 0.2307 49 1 5.8195 4.7522 0.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457987619.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:55 Heat of formation + Delta-G solvation = -69.388272 kcal Electronic energy + Delta-G solvation = -27654.742270 eV Core-core repulsion = 23773.850119 eV Total energy + Delta-G solvation = -3880.892151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62116 -40.82586 -39.14818 -38.30744 -36.86907 -35.16048 -33.98046 -33.49140 -32.12804 -32.09926 -28.07632 -27.91011 -27.30087 -26.94354 -25.02053 -24.02334 -22.59629 -22.24804 -21.13512 -20.99093 -19.51358 -18.13959 -17.76940 -17.42647 -17.19485 -16.89717 -16.81344 -16.69020 -16.42447 -15.55590 -15.52502 -15.39893 -14.99805 -14.86857 -14.79744 -14.72296 -14.31853 -13.99813 -13.85946 -13.74259 -13.68826 -13.33287 -12.99312 -12.94573 -12.92755 -12.47209 -12.39003 -12.17064 -12.03569 -11.94821 -11.76997 -11.74578 -11.26030 -11.12494 -10.98461 -10.61697 -10.39472 -10.37803 -10.24170 -10.01827 -9.93809 -8.29189 -6.31797 -0.41305 -0.03294 1.37331 1.39850 1.51467 1.53253 1.95857 2.01808 2.21394 2.36228 2.83700 3.06754 3.56652 3.58833 3.81693 3.90750 4.01842 4.04419 4.08152 4.10671 4.30298 4.30708 4.37213 4.40131 4.54928 4.65970 4.75373 4.76317 4.81044 4.85620 4.87001 4.88996 4.93265 5.05387 5.13592 5.15817 5.16386 5.20789 5.24429 5.25402 5.28503 5.37613 5.44928 5.50676 5.70608 5.73239 5.80079 6.29685 6.44410 6.53809 6.72488 7.11055 7.17765 7.33011 8.88068 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.034525 B = 0.001986 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.807713 B =14093.264895 C =14680.624951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.113 3.887 4 N -0.707 5.707 5 C 0.554 3.446 6 O -0.586 6.586 7 C -0.156 4.156 8 C -0.043 4.043 9 C -0.115 4.115 10 C -0.053 4.053 11 C -0.152 4.152 12 C 0.546 3.454 13 O -0.591 6.591 14 N -0.700 5.700 15 C 0.155 3.845 16 C 0.027 3.973 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.521 4.521 20 H 0.023 0.977 21 C 0.014 3.986 22 N -0.947 5.947 23 Si 0.947 3.053 24 H -0.281 1.281 25 H -0.316 1.316 26 H -0.197 1.197 27 C -0.028 4.028 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.419 0.581 36 H 0.176 0.824 37 H 0.186 0.814 38 H 0.158 0.842 39 H 0.413 0.587 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.039 0.961 45 H 0.045 0.955 46 H 0.038 0.962 47 H 0.078 0.922 48 H 0.264 0.736 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.039 -31.172 -0.767 37.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.360 5.360 5 C 0.342 3.658 6 O -0.467 6.467 7 C -0.159 4.159 8 C -0.062 4.062 9 C -0.132 4.132 10 C -0.072 4.072 11 C -0.155 4.155 12 C 0.334 3.666 13 O -0.473 6.473 14 N -0.352 5.352 15 C 0.031 3.969 16 C 0.026 3.974 17 C -0.199 4.199 18 C -0.204 4.204 19 C -0.559 4.559 20 H 0.042 0.958 21 C -0.183 4.183 22 N -0.586 5.586 23 Si 0.776 3.224 24 H -0.209 1.209 25 H -0.245 1.245 26 H -0.121 1.121 27 C -0.048 4.048 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.258 0.742 36 H 0.194 0.806 37 H 0.203 0.797 38 H 0.176 0.824 39 H 0.252 0.748 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.096 0.904 48 H 0.073 0.927 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.748 -29.615 -0.740 36.750 hybrid contribution 1.043 0.683 -0.212 1.265 sum -20.705 -28.932 -0.951 35.590 Atomic orbital electron populations 1.21707 0.94417 1.02868 1.02073 1.21692 0.97030 0.93423 1.04125 1.21538 0.78555 0.99344 1.01550 1.45749 1.07854 1.08101 1.74278 1.18514 0.87621 0.83973 0.75665 1.90791 1.70844 1.33304 1.51757 1.19808 0.92362 0.94691 1.09053 1.21936 0.95233 0.96741 0.92263 1.21585 0.93640 0.99122 0.98859 1.21936 1.01751 0.90832 0.92674 1.19767 0.93468 0.93321 1.08970 1.18807 0.82594 0.89274 0.75904 1.90761 1.69759 1.34489 1.52293 1.45901 1.05264 1.10606 1.73420 1.21108 0.91454 0.84585 0.99714 1.18673 0.90482 0.94308 0.93959 1.22227 1.01151 0.98885 0.97606 1.22302 0.99874 0.99832 0.98432 1.21016 0.91578 0.91982 1.51302 0.95827 1.25923 0.98427 1.00017 0.93927 1.70127 1.07738 1.31417 1.49338 0.86302 0.75720 0.82227 0.78178 1.20881 1.24513 1.12078 1.21184 0.93025 0.98351 0.92269 0.90892 0.92753 0.92742 0.89807 0.89810 0.92622 0.92611 0.74242 0.80649 0.79711 0.82449 0.74760 0.93915 0.94122 0.91079 0.93343 0.94223 0.93613 0.94383 0.90372 0.92691 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 71.98 0.71 -0.11 16 2 C -0.12 -0.59 6.05 30.59 0.19 -0.41 16 3 C 0.11 1.37 5.67 86.38 0.49 1.86 16 4 N -0.71 -8.68 5.51 -465.96 -2.57 -11.24 16 5 C 0.55 12.38 7.77 86.79 0.67 13.06 16 6 O -0.59 -19.49 16.34 -3.86 -0.06 -19.55 16 7 C -0.16 -3.09 5.87 -20.12 -0.12 -3.21 16 8 C -0.04 -0.39 9.54 22.58 0.22 -0.18 16 9 C -0.11 -0.90 10.02 22.19 0.22 -0.68 16 10 C -0.05 -0.78 9.54 22.58 0.22 -0.57 16 11 C -0.15 -3.89 5.87 -20.12 -0.12 -4.00 16 12 C 0.55 18.77 7.77 86.79 0.67 19.44 16 13 O -0.59 -26.59 16.34 -3.85 -0.06 -26.65 16 14 N -0.70 -21.85 4.95 -465.95 -2.31 -24.16 16 15 C 0.16 6.33 4.49 86.38 0.39 6.71 16 16 C 0.03 1.13 0.50 -52.93 -0.03 1.10 16 17 C -0.14 -5.15 7.53 71.98 0.54 -4.61 16 18 C -0.15 -5.30 7.52 71.98 0.54 -4.76 16 19 C -0.52 -28.82 8.62 25.60 0.22 -28.60 16 20 H 0.02 1.50 7.99 -2.91 -0.02 1.48 16 21 C 0.01 0.81 5.32 84.65 0.45 1.26 16 22 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 23 Si 0.95 41.69 22.79 68.60 1.56 43.26 16 24 H -0.28 -12.16 7.10 99.48 0.71 -11.45 16 25 H -0.32 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.20 -7.08 4.65 99.48 0.46 -6.62 16 27 C -0.03 -0.78 9.14 22.79 0.21 -0.57 16 28 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.42 1.57 6.50 -92.71 -0.60 0.96 16 36 H 0.18 -0.10 6.39 -2.91 -0.02 -0.12 16 37 H 0.19 -0.14 8.06 -2.91 -0.02 -0.17 16 38 H 0.16 1.50 6.39 -2.91 -0.02 1.49 16 39 H 0.41 9.49 4.28 -92.71 -0.40 9.09 16 40 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.88 7.13 -2.38 -0.02 1.86 16 43 H 0.05 1.86 4.30 -2.39 -0.01 1.85 16 44 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.04 1.41 2.25 -2.39 -0.01 1.41 16 47 H 0.08 2.03 6.86 -2.39 -0.02 2.02 16 48 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 49 H 0.11 3.84 7.23 -2.91 -0.02 3.82 16 Total: -1.00 -86.85 385.10 2.08 -84.77 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -0.26 Total: 16.41 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 5.48 Total: -4.27 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -4.58 Total: -93.97 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.13 Total: -46.20 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.56 Total: 43.26 kcal Total: -86.85 2.08 -84.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987619.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.381 kcal (2) G-P(sol) polarization free energy of solvation -86.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds