Wall clock time and date at job start Tue Mar 31 2020 16:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47109 * 2 1 4 4 N 1.46896 * 109.47028 * 120.00175 * 2 1 3 5 5 C 1.46899 * 111.00109 * 154.99948 * 4 2 1 6 6 C 1.53005 * 109.47280 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47051 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.46990 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00065 * 179.97438 * 8 7 6 10 10 O 1.21726 * 120.00073 * 359.97438 * 9 8 7 11 11 C 1.46258 * 120.00322 * 179.97438 * 9 8 7 12 12 C 1.35015 * 120.00185 * 179.97438 * 11 9 8 13 13 C 1.46966 * 119.99859 * 179.72327 * 12 11 9 14 14 C 1.40020 * 120.10099 * 359.72646 * 13 12 11 15 15 C 1.37601 * 119.89632 * 179.78802 * 14 13 12 16 16 C 1.39173 * 120.10087 * 0.48795 * 15 14 13 17 17 O 1.35568 * 119.90002 * 179.76457 * 16 15 14 18 18 C 1.34779 * 117.00070 * 174.42258 * 17 16 15 19 19 H 1.07996 * 120.00296 * 5.05680 * 18 17 16 20 20 C 1.38728 * 119.99880 * 185.05920 * 18 17 16 21 21 N 1.31504 * 119.99788 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46864 * 89.99472 * 22 20 18 24 24 H 1.48497 * 109.47062 * 209.99626 * 22 20 18 25 25 H 1.48504 * 109.47113 * 329.99918 * 22 20 18 26 26 C 1.39182 * 120.20443 * 359.74007 * 16 15 14 27 27 C 1.37597 * 120.10073 * 0.02562 * 26 16 15 28 28 H 1.09004 * 109.47575 * 299.99835 * 1 2 3 29 29 H 1.09009 * 109.47337 * 59.99777 * 1 2 3 30 30 H 1.09000 * 109.47154 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47167 * 240.00378 * 2 1 3 32 32 H 1.09004 * 109.47220 * 60.00295 * 3 2 1 33 33 H 1.08999 * 109.47338 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47736 * 300.00153 * 3 2 1 35 35 H 1.00899 * 111.00078 * 31.04298 * 4 2 1 36 36 H 1.09002 * 109.47246 * 59.99814 * 5 4 2 37 37 H 1.09003 * 109.47371 * 299.99894 * 5 4 2 38 38 H 1.08997 * 109.46792 * 59.99950 * 6 5 4 39 39 H 1.09003 * 109.46783 * 300.00195 * 6 5 4 40 40 H 1.09000 * 109.47095 * 59.99600 * 7 6 5 41 41 H 1.09000 * 109.46745 * 299.99703 * 7 6 5 42 42 H 0.97004 * 120.00076 * 359.97438 * 8 7 6 43 43 H 1.08007 * 119.99439 * 359.72456 * 11 9 8 44 44 H 1.07994 * 120.00134 * 359.72623 * 12 11 9 45 45 H 1.08001 * 120.05482 * 359.97438 * 14 13 12 46 46 H 1.08000 * 119.94685 * 180.22931 * 15 14 13 47 47 H 0.97004 * 119.99826 * 180.02562 * 21 20 18 48 48 H 1.07995 * 119.94818 * 179.97438 * 26 16 15 49 49 H 1.07996 * 120.05582 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3669 -1.2355 0.9806 6 6 3.8416 -1.9483 2.2486 7 6 5.2451 -2.5133 2.0209 8 7 5.6994 -3.1963 3.2347 9 6 6.9158 -3.7757 3.2667 10 8 7.6369 -3.7318 2.2870 11 6 7.3696 -4.4571 4.4787 12 6 8.5880 -5.0380 4.5106 13 6 9.0463 -5.7175 5.7305 14 6 8.2235 -5.7588 6.8627 15 6 8.6551 -6.3999 8.0012 16 6 9.9114 -6.9979 8.0318 17 8 10.3345 -7.6243 9.1572 18 6 11.5089 -8.2818 9.0868 19 1 12.1065 -8.2253 8.1891 20 6 11.9500 -9.0313 10.1677 21 7 11.2225 -9.0997 11.2610 22 14 13.5774 -9.9432 10.0699 23 1 14.6692 -9.0606 10.5538 24 1 13.5137 -11.1615 10.9166 25 1 13.8429 -10.3324 8.6616 26 6 10.7347 -6.9552 6.9104 27 6 10.3096 -6.3206 5.7659 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.3792 -1.4182 1.4847 36 1 4.0523 -0.4220 0.7425 37 1 3.3430 -1.9445 0.1530 38 1 3.1562 -2.7618 2.4862 39 1 3.8654 -1.2397 3.0765 40 1 5.9302 -1.6995 1.7834 41 1 5.2216 -3.2218 1.1929 42 1 5.1246 -3.2316 4.0153 43 1 6.7316 -4.4922 5.3495 44 1 9.2257 -5.0033 3.6398 45 1 7.2504 -5.2908 6.8415 46 1 8.0196 -6.4354 8.8737 47 1 11.5312 -9.6235 12.0169 48 1 11.7090 -7.4203 6.9388 49 1 10.9492 -6.2876 4.8963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493608423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:18 Heat of formation + Delta-G solvation = -41.464305 kcal Electronic energy + Delta-G solvation = -25725.612864 eV Core-core repulsion = 21845.931587 eV Total energy + Delta-G solvation = -3879.681277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.62068 -39.12555 -38.05454 -36.91001 -35.59375 -33.23228 -33.02529 -32.28273 -30.43415 -29.95566 -28.17879 -27.72095 -25.77436 -25.01939 -22.91924 -22.13761 -21.91800 -20.95732 -20.69275 -19.27027 -18.14807 -17.13797 -17.01125 -16.62785 -16.29224 -15.69000 -15.24155 -15.00728 -14.80355 -14.75563 -14.41166 -14.31103 -13.89114 -13.81642 -13.37035 -13.09360 -13.03773 -12.99725 -12.80334 -12.59065 -12.55701 -11.99768 -11.93352 -11.79503 -11.75425 -11.70939 -11.60458 -11.44188 -11.15345 -11.12275 -11.07169 -10.68093 -10.53923 -9.79188 -9.60720 -9.49429 -9.14298 -8.94084 -8.84706 -8.38142 -7.11340 -6.65253 -4.20126 1.07755 2.13639 2.56390 3.03857 3.04859 3.09656 3.14435 3.59303 3.68079 3.82265 4.40247 4.49923 4.51111 4.58513 4.66967 4.78115 4.85826 4.92458 5.04380 5.06983 5.11558 5.18164 5.24570 5.27728 5.30852 5.36173 5.39819 5.46956 5.53635 5.62425 5.64947 5.67266 5.73870 5.81195 5.85254 6.01451 6.12163 6.34536 6.47051 6.49496 6.55782 6.61435 6.79337 6.88957 6.92044 7.13141 7.23797 7.28272 7.55351 7.64037 7.80114 8.34916 8.79590 9.46578 10.51389 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.041667 B = 0.001295 C = 0.001265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.830429 B =21620.466948 C =22125.713102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.077 3.923 3 C -0.141 4.141 4 N -0.687 5.687 5 C 0.062 3.938 6 C -0.129 4.129 7 C 0.123 3.877 8 N -0.734 5.734 9 C 0.555 3.445 10 O -0.560 6.560 11 C -0.283 4.283 12 C 0.038 3.962 13 C -0.199 4.199 14 C -0.043 4.043 15 C -0.199 4.199 16 C 0.167 3.833 17 O -0.162 6.162 18 C -0.394 4.394 19 H 0.097 0.903 20 C 0.042 3.958 21 N -0.852 5.852 22 Si 0.944 3.056 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.265 1.265 26 C -0.242 4.242 27 C -0.035 4.035 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.341 0.659 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.401 0.599 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.274 0.726 48 H 0.131 0.869 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 14.233 -17.825 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.033 4.033 3 C -0.199 4.199 4 N -0.320 5.320 5 C -0.068 4.068 6 C -0.168 4.168 7 C -0.002 4.002 8 N -0.386 5.386 9 C 0.347 3.653 10 O -0.441 6.441 11 C -0.304 4.304 12 C 0.018 3.982 13 C -0.200 4.200 14 C -0.061 4.061 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.063 6.063 18 C -0.469 4.469 19 H 0.115 0.885 20 C -0.164 4.164 21 N -0.485 5.485 22 Si 0.768 3.232 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.189 1.189 26 C -0.261 4.261 27 C -0.053 4.053 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.159 0.841 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.235 0.765 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.084 0.916 48 H 0.149 0.851 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.253 14.697 -17.741 28.194 hybrid contribution 0.304 -1.224 -0.208 1.278 sum -15.949 13.474 -17.949 27.533 Atomic orbital electron populations 1.21981 0.94599 1.01961 1.02729 1.21515 0.94839 0.95689 0.91207 1.21802 1.01145 0.95205 1.01748 1.60512 1.03684 1.33203 1.34564 1.21891 0.90904 0.97916 0.96089 1.21753 0.95600 1.00371 0.99038 1.21182 0.94513 0.96666 0.87832 1.45829 1.18437 1.57802 1.16521 1.18426 0.80618 0.77877 0.88384 1.90775 1.55043 1.61100 1.37160 1.22433 1.00075 1.09771 0.98133 1.22284 0.93528 0.87061 0.95296 1.18473 0.97146 1.09915 0.94503 1.20883 0.97882 0.95723 0.91636 1.20149 0.95605 1.06499 0.99610 1.19616 0.92208 0.90763 0.86386 1.83901 1.37306 1.56276 1.28863 1.21480 0.95058 1.27506 1.02871 0.88539 1.25389 0.99873 0.96700 0.94438 1.70012 1.37241 1.37458 1.03756 0.85655 0.79724 0.78773 0.79029 1.19625 1.20032 1.18937 1.21100 1.02318 1.08559 0.94149 1.20990 0.94010 0.93574 0.96746 0.91630 0.91860 0.92761 0.93902 0.91931 0.92763 0.92624 0.84053 0.90582 0.94903 0.91337 0.90233 0.91597 0.91832 0.76542 0.85874 0.85949 0.86399 0.86127 0.91598 0.85120 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.18 37.16 0.34 -0.34 16 2 C 0.08 0.43 3.22 -67.72 -0.22 0.21 16 3 C -0.14 -0.79 9.41 37.16 0.35 -0.44 16 4 N -0.69 -4.13 6.31 -106.73 -0.67 -4.80 16 5 C 0.06 0.38 5.48 -3.82 -0.02 0.36 16 6 C -0.13 -0.80 5.59 -26.73 -0.15 -0.95 16 7 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 8 N -0.73 -7.48 5.55 -61.76 -0.34 -7.82 16 9 C 0.55 7.83 7.74 -13.04 -0.10 7.72 16 10 O -0.56 -9.92 16.23 5.17 0.08 -9.83 16 11 C -0.28 -3.87 9.41 -37.51 -0.35 -4.23 16 12 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 13 C -0.20 -3.41 5.87 -105.02 -0.62 -4.03 16 14 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 15 C -0.20 -3.98 9.97 -39.47 -0.39 -4.37 16 16 C 0.17 3.83 6.66 -38.88 -0.26 3.57 16 17 O -0.16 -4.41 9.74 0.75 0.01 -4.41 16 18 C -0.39 -10.46 9.48 30.91 0.29 -10.17 16 19 H 0.10 2.36 5.18 -52.49 -0.27 2.08 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 21 N -0.85 -23.81 13.67 55.48 0.76 -23.06 16 22 Si 0.94 19.50 29.55 -169.99 -5.02 14.47 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 C -0.24 -5.01 9.14 -39.47 -0.36 -5.37 16 27 C -0.03 -0.62 9.78 -39.14 -0.38 -1.01 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.05 0.21 8.12 -51.93 -0.42 -0.21 16 31 H 0.04 0.25 7.80 -51.93 -0.40 -0.16 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.33 7.45 -51.93 -0.39 -0.06 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.34 1.74 8.35 -39.29 -0.33 1.41 16 36 H 0.08 0.51 7.44 -51.93 -0.39 0.12 16 37 H 0.03 0.20 8.06 -51.93 -0.42 -0.22 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.40 3.03 8.45 -40.82 -0.34 2.69 16 43 H 0.12 1.43 6.07 -52.48 -0.32 1.11 16 44 H 0.12 1.87 7.52 -52.49 -0.39 1.48 16 45 H 0.12 1.63 6.16 -52.49 -0.32 1.30 16 46 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 49 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 409.11 15.07 6.17 6.17 Total: -1.00 -31.08 409.11 -9.39 -40.47 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.66 Total: 6.64 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.71 Total: -17.84 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.26 Total: -35.67 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.08 -9.39 -40.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493608423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.996 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds