Wall clock time and date at job start Tue Mar 31 2020 16:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47109 * 2 1 4 4 N 1.46896 * 109.47028 * 120.00175 * 2 1 3 5 5 C 1.46899 * 111.00109 * 154.99948 * 4 2 1 6 6 C 1.53005 * 109.47280 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47051 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.46990 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00065 * 179.97438 * 8 7 6 10 10 O 1.21726 * 120.00073 * 359.97438 * 9 8 7 11 11 C 1.46258 * 120.00322 * 179.97438 * 9 8 7 12 12 C 1.35015 * 120.00185 * 179.97438 * 11 9 8 13 13 C 1.46966 * 119.99859 * 179.72327 * 12 11 9 14 14 C 1.40020 * 120.10099 * 359.72646 * 13 12 11 15 15 C 1.37601 * 119.89632 * 179.78802 * 14 13 12 16 16 C 1.39173 * 120.10087 * 0.48795 * 15 14 13 17 17 O 1.35568 * 119.90002 * 179.76457 * 16 15 14 18 18 C 1.34779 * 117.00070 * 174.42258 * 17 16 15 19 19 H 1.07996 * 120.00296 * 5.05680 * 18 17 16 20 20 C 1.38728 * 119.99880 * 185.05920 * 18 17 16 21 21 N 1.31504 * 119.99788 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46864 * 89.99472 * 22 20 18 24 24 H 1.48497 * 109.47062 * 209.99626 * 22 20 18 25 25 H 1.48504 * 109.47113 * 329.99918 * 22 20 18 26 26 C 1.39182 * 120.20443 * 359.74007 * 16 15 14 27 27 C 1.37597 * 120.10073 * 0.02562 * 26 16 15 28 28 H 1.09004 * 109.47575 * 299.99835 * 1 2 3 29 29 H 1.09009 * 109.47337 * 59.99777 * 1 2 3 30 30 H 1.09000 * 109.47154 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47167 * 240.00378 * 2 1 3 32 32 H 1.09004 * 109.47220 * 60.00295 * 3 2 1 33 33 H 1.08999 * 109.47338 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47736 * 300.00153 * 3 2 1 35 35 H 1.00899 * 111.00078 * 31.04298 * 4 2 1 36 36 H 1.09002 * 109.47246 * 59.99814 * 5 4 2 37 37 H 1.09003 * 109.47371 * 299.99894 * 5 4 2 38 38 H 1.08997 * 109.46792 * 59.99950 * 6 5 4 39 39 H 1.09003 * 109.46783 * 300.00195 * 6 5 4 40 40 H 1.09000 * 109.47095 * 59.99600 * 7 6 5 41 41 H 1.09000 * 109.46745 * 299.99703 * 7 6 5 42 42 H 0.97004 * 120.00076 * 359.97438 * 8 7 6 43 43 H 1.08007 * 119.99439 * 359.72456 * 11 9 8 44 44 H 1.07994 * 120.00134 * 359.72623 * 12 11 9 45 45 H 1.08001 * 120.05482 * 359.97438 * 14 13 12 46 46 H 1.08000 * 119.94685 * 180.22931 * 15 14 13 47 47 H 0.97004 * 119.99826 * 180.02562 * 21 20 18 48 48 H 1.07995 * 119.94818 * 179.97438 * 26 16 15 49 49 H 1.07996 * 120.05582 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3669 -1.2355 0.9806 6 6 3.8416 -1.9483 2.2486 7 6 5.2451 -2.5133 2.0209 8 7 5.6994 -3.1963 3.2347 9 6 6.9158 -3.7757 3.2667 10 8 7.6369 -3.7318 2.2870 11 6 7.3696 -4.4571 4.4787 12 6 8.5880 -5.0380 4.5106 13 6 9.0463 -5.7175 5.7305 14 6 8.2235 -5.7588 6.8627 15 6 8.6551 -6.3999 8.0012 16 6 9.9114 -6.9979 8.0318 17 8 10.3345 -7.6243 9.1572 18 6 11.5089 -8.2818 9.0868 19 1 12.1065 -8.2253 8.1891 20 6 11.9500 -9.0313 10.1677 21 7 11.2225 -9.0997 11.2610 22 14 13.5774 -9.9432 10.0699 23 1 14.6692 -9.0606 10.5538 24 1 13.5137 -11.1615 10.9166 25 1 13.8429 -10.3324 8.6616 26 6 10.7347 -6.9552 6.9104 27 6 10.3096 -6.3206 5.7659 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.3792 -1.4182 1.4847 36 1 4.0523 -0.4220 0.7425 37 1 3.3430 -1.9445 0.1530 38 1 3.1562 -2.7618 2.4862 39 1 3.8654 -1.2397 3.0765 40 1 5.9302 -1.6995 1.7834 41 1 5.2216 -3.2218 1.1929 42 1 5.1246 -3.2316 4.0153 43 1 6.7316 -4.4922 5.3495 44 1 9.2257 -5.0033 3.6398 45 1 7.2504 -5.2908 6.8415 46 1 8.0196 -6.4354 8.8737 47 1 11.5312 -9.6235 12.0169 48 1 11.7090 -7.4203 6.9388 49 1 10.9492 -6.2876 4.8963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493608423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:17 Heat of formation + Delta-G solvation = -61.822192 kcal Electronic energy + Delta-G solvation = -25726.495648 eV Core-core repulsion = 21845.931587 eV Total energy + Delta-G solvation = -3880.564061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.91643 -40.57631 -38.61720 -38.43598 -36.42830 -34.73019 -34.03768 -33.67015 -31.96240 -30.70630 -29.48702 -28.13096 -27.52079 -25.93925 -24.16620 -23.61095 -22.54548 -21.99868 -21.41503 -20.59611 -19.71038 -18.83993 -18.19724 -17.18326 -17.15286 -16.46483 -16.44857 -16.31150 -16.02036 -15.84803 -15.61341 -15.37537 -15.26025 -15.06988 -14.66608 -14.53754 -14.10353 -13.76899 -13.59766 -13.46166 -13.35207 -13.28711 -13.13954 -12.95830 -12.70532 -12.56995 -12.52773 -12.28906 -12.21170 -12.12905 -12.06593 -11.92364 -11.62530 -11.21120 -11.10837 -10.97709 -10.57996 -10.06691 -9.88588 -9.40090 -8.67355 -8.51897 -6.18073 -0.23840 0.59175 1.14216 1.36113 1.46091 1.53163 2.15606 2.25811 2.38006 2.86971 3.17837 3.18444 3.43035 3.81304 3.95165 3.95296 4.06381 4.08244 4.09053 4.13541 4.30146 4.32550 4.37111 4.44851 4.48964 4.52561 4.66054 4.69603 4.74930 4.81793 4.95247 4.95517 4.97521 4.99517 5.03630 5.16433 5.19945 5.22157 5.29675 5.30796 5.34290 5.40426 5.49315 5.59837 5.64500 5.82150 5.97715 6.09387 6.11153 6.48780 6.62230 6.92555 7.29783 7.69625 8.70166 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.041667 B = 0.001295 C = 0.001265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.830429 B =21620.466948 C =22125.713102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 C -0.140 4.140 4 N -0.692 5.692 5 C 0.064 3.936 6 C -0.114 4.114 7 C 0.122 3.878 8 N -0.715 5.715 9 C 0.548 3.452 10 O -0.598 6.598 11 C -0.245 4.245 12 C 0.014 3.986 13 C -0.171 4.171 14 C -0.038 4.038 15 C -0.206 4.206 16 C 0.129 3.871 17 O -0.220 6.220 18 C -0.418 4.418 19 H 0.105 0.895 20 C -0.017 4.017 21 N -0.913 5.913 22 Si 1.017 2.983 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.253 1.253 26 C -0.249 4.249 27 C -0.041 4.041 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.347 0.653 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.417 0.583 43 H 0.154 0.846 44 H 0.124 0.876 45 H 0.161 0.839 46 H 0.123 0.877 47 H 0.275 0.725 48 H 0.124 0.876 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.809 15.753 -20.376 31.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.035 4.035 3 C -0.198 4.198 4 N -0.325 5.325 5 C -0.066 4.066 6 C -0.152 4.152 7 C -0.002 4.002 8 N -0.366 5.366 9 C 0.339 3.661 10 O -0.481 6.481 11 C -0.265 4.265 12 C -0.006 4.006 13 C -0.172 4.172 14 C -0.055 4.055 15 C -0.225 4.225 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.494 4.494 19 H 0.122 0.878 20 C -0.215 4.215 21 N -0.550 5.550 22 Si 0.836 3.164 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.176 1.176 26 C -0.268 4.268 27 C -0.059 4.059 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.166 0.834 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.254 0.746 43 H 0.171 0.829 44 H 0.141 0.859 45 H 0.179 0.821 46 H 0.141 0.859 47 H 0.084 0.916 48 H 0.142 0.858 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.225 16.269 -20.338 31.788 hybrid contribution 0.510 -1.310 0.111 1.410 sum -17.715 14.959 -20.227 30.769 Atomic orbital electron populations 1.21945 0.93667 1.02375 1.02882 1.21551 0.95605 0.95399 0.90925 1.21796 1.00620 0.95481 1.01911 1.60502 1.03699 1.33469 1.34856 1.21831 0.91016 0.97666 0.96080 1.21610 0.93969 1.00629 0.99028 1.21252 0.95840 0.96093 0.87027 1.45739 1.17282 1.56015 1.17582 1.18569 0.81440 0.78159 0.87942 1.90778 1.56387 1.62502 1.38447 1.22778 0.99203 1.06002 0.98544 1.22167 0.94773 0.88992 0.94652 1.18794 0.96265 1.07175 0.94967 1.21294 0.99443 0.94632 0.90151 1.20424 0.94706 1.06430 1.00989 1.20198 0.93901 0.91574 0.86623 1.83882 1.38302 1.59277 1.31032 1.21901 0.95608 1.28282 1.03586 0.87751 1.26587 1.03723 0.97423 0.93813 1.70145 1.39886 1.40038 1.04953 0.84604 0.74851 0.77371 0.79544 1.18763 1.19512 1.17631 1.21197 1.02007 1.08989 0.94605 1.21315 0.95007 0.92906 0.96650 0.91950 0.91238 0.92217 0.94157 0.92528 0.93544 0.91720 0.83382 0.91320 0.94889 0.90019 0.89998 0.92547 0.92497 0.74582 0.82904 0.85858 0.82138 0.85877 0.91588 0.85797 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.18 71.98 0.66 -0.38 16 2 C 0.07 0.70 3.22 44.91 0.14 0.84 16 3 C -0.14 -1.39 9.41 71.98 0.68 -0.72 16 4 N -0.69 -6.83 6.31 -491.58 -3.10 -9.93 16 5 C 0.06 0.65 5.48 86.30 0.47 1.12 16 6 C -0.11 -1.06 5.59 30.60 0.17 -0.88 16 7 C 0.12 1.82 5.67 86.38 0.49 2.32 16 8 N -0.71 -11.71 5.55 -467.50 -2.60 -14.31 16 9 C 0.55 13.38 7.74 86.33 0.67 14.05 16 10 O -0.60 -19.65 16.23 -4.43 -0.07 -19.72 16 11 C -0.24 -5.51 9.41 23.61 0.22 -5.28 16 12 C 0.01 0.38 9.45 23.82 0.23 0.60 16 13 C -0.17 -5.32 5.87 -20.12 -0.12 -5.44 16 14 C -0.04 -1.16 9.40 22.55 0.21 -0.95 16 15 C -0.21 -8.18 9.97 22.34 0.22 -7.96 16 16 C 0.13 6.15 6.66 22.72 0.15 6.30 16 17 O -0.22 -12.74 9.74 -20.22 -0.20 -12.94 16 18 C -0.42 -23.55 9.48 67.94 0.64 -22.90 16 19 H 0.11 5.38 5.18 -2.91 -0.02 5.36 16 20 C -0.02 -0.91 5.49 84.86 0.47 -0.45 16 21 N -0.91 -54.31 13.67 21.62 0.30 -54.01 16 22 Si 1.02 41.46 29.55 68.60 2.03 43.48 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 26 C -0.25 -10.45 9.14 22.34 0.20 -10.24 16 27 C -0.04 -1.39 9.78 22.55 0.22 -1.17 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.39 8.14 -2.38 -0.02 0.38 16 30 H 0.06 0.35 8.12 -2.39 -0.02 0.33 16 31 H 0.04 0.40 7.80 -2.39 -0.02 0.38 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.05 0.52 7.45 -2.39 -0.02 0.50 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.35 2.67 8.35 -89.69 -0.75 1.92 16 36 H 0.07 0.81 7.44 -2.39 -0.02 0.79 16 37 H 0.03 0.34 8.06 -2.39 -0.02 0.32 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.42 4.22 8.45 -92.71 -0.78 3.44 16 43 H 0.15 2.53 6.07 -2.91 -0.02 2.51 16 44 H 0.12 3.38 7.52 -2.91 -0.02 3.36 16 45 H 0.16 3.54 6.16 -2.91 -0.02 3.52 16 46 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 47 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 48 H 0.12 5.27 5.62 -2.91 -0.02 5.25 16 49 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -72.67 409.11 1.53 -71.15 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.57 Total: 27.41 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 5.74 Total: -31.13 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -5.40 Total: -78.25 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.27 Total: -32.66 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -72.67 1.53 -71.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493608423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.324 kcal (2) G-P(sol) polarization free energy of solvation -72.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds