Wall clock time and date at job start Tue Mar 31 2020 16:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46906 * 2 1 4 4 N 1.46890 * 109.47292 * 120.00235 * 2 1 3 5 5 C 1.46898 * 111.00294 * 154.99850 * 4 2 1 6 6 C 1.53000 * 109.47407 * 180.02562 * 5 4 2 7 7 C 1.53008 * 109.46969 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.46632 * 179.97438 * 7 6 5 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 6 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47098 * 90.00722 * 22 20 18 24 24 H 1.48507 * 109.46797 * 210.00341 * 22 20 18 25 25 H 1.48504 * 109.47379 * 330.00326 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.46974 * 300.00050 * 1 2 3 29 29 H 1.08998 * 109.47572 * 59.99679 * 1 2 3 30 30 H 1.08998 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46638 * 240.00640 * 2 1 3 32 32 H 1.08995 * 109.47413 * 299.99751 * 3 2 1 33 33 H 1.09004 * 109.47440 * 60.00724 * 3 2 1 34 34 H 1.09002 * 109.47157 * 180.02562 * 3 2 1 35 35 H 1.00905 * 111.00359 * 31.04514 * 4 2 1 36 36 H 1.09004 * 109.46948 * 59.99734 * 5 4 2 37 37 H 1.08998 * 109.46843 * 300.00174 * 5 4 2 38 38 H 1.08992 * 109.47168 * 60.00042 * 6 5 4 39 39 H 1.09003 * 109.46680 * 299.99557 * 6 5 4 40 40 H 1.08992 * 109.47442 * 59.99841 * 7 6 5 41 41 H 1.09003 * 109.46758 * 299.99142 * 7 6 5 42 42 H 0.96995 * 120.00513 * 359.97438 * 8 7 6 43 43 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 44 44 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 45 45 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 46 46 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 47 47 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 48 48 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 49 49 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.3670 -1.2355 0.9806 6 6 3.8417 -1.9483 2.2484 7 6 5.2453 -2.5132 2.0206 8 7 5.7000 -3.1952 3.2349 9 6 6.9167 -3.7744 3.2669 10 8 7.6373 -3.7313 2.2870 11 6 7.3682 -4.4605 4.4771 12 6 8.5222 -5.1615 4.4650 13 6 9.1959 -5.4458 3.1902 14 6 8.4515 -5.8648 2.0806 15 6 9.0859 -6.1253 0.8878 16 6 10.4667 -5.9830 0.7859 17 8 11.0881 -6.2453 -0.3901 18 6 12.4072 -5.9768 -0.4583 19 1 12.9377 -5.6488 0.4233 20 6 13.0832 -6.1219 -1.6609 21 7 12.4370 -6.5208 -2.7345 22 14 14.9115 -5.7504 -1.7552 23 1 15.6831 -6.9840 -1.4583 24 1 15.2495 -5.2715 -3.1197 25 1 15.2552 -4.7005 -0.7628 26 6 11.2113 -5.5719 1.8875 27 6 10.5847 -5.3037 3.0829 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.3794 -1.4182 1.4847 36 1 4.0523 -0.4219 0.7424 37 1 3.3430 -1.9444 0.1529 38 1 3.1564 -2.7618 2.4861 39 1 3.8656 -1.2396 3.0763 40 1 5.9304 -1.6995 1.7832 41 1 5.2218 -3.2218 1.1927 42 1 5.1257 -3.2299 4.0157 43 1 6.7788 -4.4064 5.3804 44 1 8.9501 -5.5133 5.3920 45 1 7.3804 -5.9793 2.1599 46 1 8.5122 -6.4448 0.0304 47 1 12.9097 -6.6219 -3.5755 48 1 12.2825 -5.4633 1.8040 49 1 11.1633 -4.9844 3.9371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493608424.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:21 Heat of formation + Delta-G solvation = -22.741650 kcal Electronic energy + Delta-G solvation = -27009.558912 eV Core-core repulsion = 23130.689510 eV Total energy + Delta-G solvation = -3878.869402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.73027 -38.71318 -37.95326 -36.57987 -35.32180 -33.04219 -32.90965 -32.09610 -30.09698 -29.83457 -27.95947 -27.62140 -25.53879 -24.91781 -22.72779 -21.79351 -21.74090 -20.90104 -20.81362 -19.13192 -17.90945 -17.15084 -16.63697 -16.50512 -16.14914 -15.53456 -15.10207 -14.88143 -14.59682 -14.52736 -14.30838 -14.09000 -13.66044 -13.43853 -13.28309 -12.99008 -12.87633 -12.86160 -12.69191 -12.52779 -12.39751 -12.15481 -11.86529 -11.68364 -11.63318 -11.51396 -11.32769 -11.32267 -11.03503 -10.97865 -10.66431 -10.59994 -10.39745 -9.47501 -9.39327 -9.13689 -8.94150 -8.83250 -8.67628 -7.89899 -6.84078 -6.44171 -3.99840 1.27258 2.44657 2.72626 3.14622 3.16162 3.20479 3.27927 3.67611 3.79659 3.98595 4.50877 4.60382 4.70502 4.71733 4.79483 4.90005 4.96892 5.11469 5.17987 5.25370 5.26626 5.27570 5.37693 5.38476 5.42182 5.46749 5.49802 5.59078 5.65640 5.73963 5.75910 5.87055 5.87451 5.94036 5.95587 6.27221 6.35628 6.45897 6.54733 6.62349 6.66451 6.81268 6.99250 7.05899 7.14446 7.38537 7.47430 7.52447 7.70627 7.94531 8.02689 8.58131 9.01564 9.73774 10.73751 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011557 B = 0.002066 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.213705 B =13550.467865 C =15381.353617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.076 3.924 3 C -0.141 4.141 4 N -0.687 5.687 5 C 0.060 3.940 6 C -0.127 4.127 7 C 0.122 3.878 8 N -0.737 5.737 9 C 0.537 3.463 10 O -0.511 6.511 11 C -0.267 4.267 12 C 0.027 3.973 13 C -0.190 4.190 14 C 0.013 3.987 15 C -0.203 4.203 16 C 0.171 3.829 17 O -0.173 6.173 18 C -0.389 4.389 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.251 4.251 27 C -0.041 4.041 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.340 0.660 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.395 0.605 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.113 0.887 47 H 0.270 0.730 48 H 0.126 0.874 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.257 9.808 11.877 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.034 4.034 3 C -0.199 4.199 4 N -0.319 5.319 5 C -0.070 4.070 6 C -0.165 4.165 7 C -0.002 4.002 8 N -0.390 5.390 9 C 0.327 3.673 10 O -0.387 6.387 11 C -0.288 4.288 12 C 0.007 3.993 13 C -0.190 4.190 14 C -0.006 4.006 15 C -0.222 4.222 16 C 0.116 3.884 17 O -0.076 6.076 18 C -0.466 4.466 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.270 4.270 27 C -0.060 4.060 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.228 0.772 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.119 0.881 46 H 0.131 0.869 47 H 0.080 0.920 48 H 0.143 0.857 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.520 10.291 10.936 24.628 hybrid contribution 0.358 -0.441 -0.171 0.593 sum -19.161 9.850 10.765 24.085 Atomic orbital electron populations 1.21974 0.94654 1.01910 1.02646 1.21525 0.94782 0.95731 0.91339 1.21796 1.01235 0.95176 1.01650 1.60527 1.03702 1.33114 1.34570 1.21906 0.90792 0.98056 0.96201 1.21730 0.95728 1.00148 0.98892 1.21176 0.94287 0.96861 0.87918 1.45957 1.18296 1.58511 1.16284 1.18507 0.80845 0.79247 0.88706 1.91000 1.53373 1.58521 1.35842 1.22600 1.01393 1.06818 0.98002 1.22334 0.91467 0.88798 0.96684 1.18296 0.93275 1.13541 0.93934 1.20437 0.96818 0.92410 0.90945 1.20001 0.91839 1.12006 0.98379 1.19527 0.91773 0.90667 0.86398 1.83905 1.24073 1.71091 1.28493 1.21394 0.81209 1.46689 0.97266 0.88890 1.25327 1.00522 0.96613 0.94152 1.70022 1.36652 1.42550 1.00253 0.85697 0.80501 0.78957 0.78196 1.19844 1.20245 1.19132 1.20950 1.00471 1.11961 0.93612 1.20741 0.92774 0.96019 0.96449 0.91726 0.91869 0.92786 0.93773 0.92630 0.92024 0.92702 0.84199 0.90525 0.94739 0.91527 0.90494 0.91587 0.91651 0.77156 0.86173 0.86084 0.88132 0.86880 0.91981 0.85654 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.18 37.16 0.34 -0.50 16 2 C 0.08 0.52 3.22 -67.72 -0.22 0.30 16 3 C -0.14 -0.98 9.41 37.16 0.35 -0.63 16 4 N -0.69 -4.94 6.31 -106.73 -0.67 -5.61 16 5 C 0.06 0.47 5.48 -3.82 -0.02 0.45 16 6 C -0.13 -0.94 5.59 -26.73 -0.15 -1.09 16 7 C 0.12 1.30 5.67 -4.04 -0.02 1.27 16 8 N -0.74 -8.08 5.55 -61.75 -0.34 -8.42 16 9 C 0.54 8.02 6.77 -13.04 -0.09 7.93 16 10 O -0.51 -10.15 12.17 5.18 0.06 -10.08 16 11 C -0.27 -3.40 9.90 -37.50 -0.37 -3.77 16 12 C 0.03 0.38 9.80 -37.19 -0.36 0.02 16 13 C -0.19 -3.56 4.54 -105.03 -0.48 -4.04 16 14 C 0.01 0.25 6.59 -39.15 -0.26 0.00 16 15 C -0.20 -4.73 9.97 -39.47 -0.39 -5.13 16 16 C 0.17 4.41 6.66 -38.88 -0.26 4.16 16 17 O -0.17 -5.15 9.74 0.74 0.01 -5.14 16 18 C -0.39 -11.21 9.48 30.91 0.29 -10.91 16 19 H 0.09 2.48 5.18 -52.49 -0.27 2.21 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 22 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C -0.25 -5.80 9.14 -39.47 -0.36 -6.16 16 27 C -0.04 -0.82 9.78 -39.15 -0.38 -1.20 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.27 8.12 -51.93 -0.42 -0.15 16 31 H 0.04 0.33 7.80 -51.93 -0.40 -0.07 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.42 7.45 -51.93 -0.39 0.03 16 35 H 0.34 2.08 8.35 -39.29 -0.33 1.76 16 36 H 0.08 0.66 7.44 -51.93 -0.39 0.27 16 37 H 0.03 0.28 8.05 -51.93 -0.42 -0.13 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.40 3.05 8.45 -40.82 -0.34 2.71 16 43 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.10 1.86 7.02 -52.48 -0.37 1.50 16 46 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.13 2.87 5.62 -52.49 -0.29 2.57 16 49 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 404.20 15.07 6.09 6.09 Total: -1.00 -34.10 404.20 -9.43 -43.53 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.83 Total: 7.00 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.48 Total: -18.32 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: -0.26 Total: -38.98 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.07 Total: -15.23 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.10 -9.43 -43.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493608424.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.791 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds